genome.fa.s135.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  89  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15700019--15700071	2	26.5	2	84	0	70	41	3	1	52	1.30
15700783--15700823	17	2.5	17	80	7	50	53	2	0	43	1.13
15707862--15707887	2	13.0	2	100	0	52	50	0	0	50	1.00
15714879--15714995	62	1.9	62	94	0	207	41	17	15	25	1.88
15726878--15727396	273	1.9	273	91	2	855	45	8	11	34	1.70
15727347--15727670	56	6.0	54	72	10	259	51	9	12	26	1.70
15727340--15727658	107	2.9	107	85	4	426	50	9	12	27	1.71
15727347--15727670	55	5.9	55	71	11	238	51	9	12	26	1.70
15730700--15730761	33	1.9	32	80	6	72	32	0	3	64	1.09
15737388--15737500	46	2.5	46	91	0	172	40	12	12	34	1.80
15737412--15737712	71	4.3	71	72	12	253	40	11	12	35	1.80
15737387--15737617	117	2.0	117	83	5	297	40	12	13	32	1.83
15737483--15737776	46	6.4	46	86	3	326	39	10	13	36	1.80
15737386--15737779	25	17.2	21	70	17	146	39	11	13	35	1.81
15738240--15738467	44	5.3	43	78	8	194	22	10	18	48	1.78
15738285--15738448	87	1.9	88	83	6	217	23	10	17	48	1.79
15739677--15739963	110	2.6	112	84	8	377	54	7	10	27	1.61
15739684--15739972	58	5.1	55	77	9	237	55	7	10	27	1.60
15748187--15748318	68	1.9	69	85	8	182	53	4	5	36	1.44
15748303--15748340	18	2.1	19	85	5	51	60	5	0	34	1.19
15748256--15748497	61	4.1	59	78	9	228	52	4	7	35	1.51
15748256--15748497	117	2.1	117	83	8	296	52	4	7	35	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15749393--15749556	62	2.6	61	81	4	159	38	8	9	43	1.68
15749618--15749703	43	2.0	43	83	0	109	37	6	4	51	1.50
15749661--15749905	61	4.0	60	77	11	221	39	8	8	43	1.66
15749661--15749879	62	3.6	60	81	9	246	38	9	7	44	1.65
15749661--15749888	123	1.9	122	82	8	293	37	8	8	45	1.66
15750321--15750353	14	2.3	15	89	5	50	21	3	6	69	1.24
15750328--15750366	17	2.3	18	82	13	55	28	0	5	66	1.12
15750472--15750523	24	2.2	24	92	0	86	34	3	13	48	1.61
15750507--15750655	61	2.4	61	81	2	190	42	10	10	36	1.73
15753532--15753566	18	2.0	18	88	5	54	20	5	0	74	1.02
15755641--15755801	46	3.5	45	75	10	148	35	9	17	37	1.82
15755638--15755804	92	1.8	91	88	3	255	35	8	17	38	1.81
15755625--15755801	45	3.9	45	74	8	160	35	10	17	36	1.85
15755928--15756003	16	4.5	17	77	9	75	30	21	9	39	1.84
15755928--15756034	34	3.1	33	75	11	83	30	17	9	42	1.81
15756144--15756203	21	2.7	21	71	7	57	35	10	10	45	1.71
15758244--15758276	16	2.0	17	88	5	50	63	3	0	33	1.10
15758254--15758381	58	2.2	60	86	8	174	50	5	8	35	1.56
15762321--15762390	29	2.4	31	85	9	101	34	1	1	62	1.13
15768859--15768898	12	3.2	12	85	3	53	82	0	10	7	0.84
15769158--15769262	35	3.0	35	87	5	142	38	16	10	35	1.83
15769644--15769795	42	3.6	43	81	2	173	27	11	19	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15769731--15771326	99	16.2	99	83	2	1762	23	13	20	42	1.87
15771264--15771389	57	2.2	57	81	2	146	24	17	20	37	1.94
15771155--15771488	156	2.1	156	85	0	443	24	14	19	41	1.89
15771047--15771581	255	2.1	255	83	2	653	24	13	20	41	1.88
15771302--15772064	99	7.7	99	82	1	832	23	14	20	41	1.90
15771311--15772070	296	2.6	296	83	3	904	23	14	20	41	1.90
15771300--15772135	395	2.1	396	84	1	1057	23	14	20	41	1.89
15778555--15778592	2	19.5	2	83	5	51	42	0	0	57	0.98
15778681--15778717	18	2.1	17	90	10	56	40	0	0	59	0.97
15780352--15780379	2	14.0	2	100	0	56	50	0	0	50	1.00
15781017--15781056	19	2.2	19	90	4	64	42	5	5	47	1.47
15783501--15783546	24	2.0	23	91	4	74	63	4	0	32	1.14
15785274--15785303	2	15.0	2	100	0	60	50	0	0	50	1.00
15788153--15788189	19	1.9	19	88	0	56	48	0	5	45	1.25
15788399--15788436	12	2.8	13	88	11	51	52	0	0	47	1.00
15795581--15795618	20	1.9	20	89	10	60	68	5	23	2	1.23
15796457--15796483	2	13.5	2	100	0	54	51	0	0	48	1.00
15800790--15800833	15	3.0	14	90	6	61	29	0	9	61	1.27
15800797--15800838	14	2.9	15	83	13	52	30	0	4	64	1.14
15808128--15808182	18	3.3	18	66	23	57	25	7	14	52	1.67
15808130--15808188	31	1.9	31	96	0	109	23	6	15	54	1.65
15818804--15818845	22	1.9	22	90	0	66	45	9	11	33	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15822753--15822794	22	1.9	22	90	0	66	42	7	14	35	1.73
15825983--15826099	62	1.9	62	82	3	146	44	11	9	35	1.72
15826941--15826976	11	3.3	11	84	0	54	30	0	25	44	1.54
15826997--15827152	52	3.0	52	83	9	201	40	7	25	26	1.82
15827726--15827807	24	3.4	25	76	5	78	42	4	29	23	1.74
15827706--15827811	49	2.2	50	81	5	126	42	4	30	22	1.74
15828050--15828085	11	3.3	11	84	0	54	30	0	25	44	1.54
15828106--15828261	52	3.0	52	82	9	192	40	7	25	27	1.81
15828834--15828915	24	3.4	25	76	5	78	42	4	29	23	1.74
15828814--15828919	49	2.2	50	81	5	126	42	4	30	22	1.74
15829158--15829193	11	3.3	11	84	0	54	30	0	25	44	1.54
15829214--15829369	52	3.0	52	83	9	201	40	7	25	26	1.82
15830534--15830644	53	2.1	53	91	0	177	36	5	21	36	1.77
15835050--15835096	14	3.4	14	82	11	53	48	2	2	46	1.25
15835067--15835103	18	1.9	19	89	10	58	48	2	0	48	1.15
15835063--15835120	23	2.5	24	83	8	75	46	1	0	51	1.11
15835066--15835117	20	2.5	20	75	9	52	46	1	0	51	1.12
15835165--15835230	16	4.2	16	76	3	62	42	0	1	56	1.08
15841573--15841597	12	2.1	12	100	0	50	32	8	32	28	1.86
15842335--15842382	19	2.5	20	80	10	64	66	0	0	33	0.92
15842362--15842439	38	2.0	39	85	14	108	56	5	0	38	1.22
15859394--15859437	22	2.0	22	95	0	79	29	13	15	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15860214--15860278	32	2.0	32	100	0	130	47	12	12	27	1.77
15871038--15871068	15	2.1	15	100	0	62	32	0	6	61	1.21
15871319--15871544	111	2.0	111	96	0	416	21	30	10	37	1.87
15872694--15872722	2	14.5	2	100	0	58	48	0	0	51	1.00
15873145--15873174	2	15.0	2	100	0	60	50	0	0	50	1.00
15873174--15873198	2	12.5	2	100	0	50	0	0	48	52	1.00
15878721--15878833	27	4.3	27	66	21	78	46	1	3	48	1.29
15878954--15879013	23	2.5	24	84	10	79	55	3	0	41	1.16
15878954--15879013	24	2.6	23	82	15	70	55	3	0	41	1.16
15879475--15879583	38	2.9	37	76	5	103	56	11	4	26	1.54
15880552--15880590	3	13.0	3	100	0	78	66	0	0	33	0.92
15885612--15885698	37	2.4	37	78	9	97	33	9	24	33	1.87
15886123--15886158	19	1.9	19	88	5	56	50	2	5	41	1.40
15888270--15888329	20	2.9	21	73	16	70	38	10	6	45	1.64
15889774--15889816	22	2.0	22	86	9	61	39	20	9	30	1.84
15919142--15919577	231	1.9	230	79	3	500	25	25	11	37	1.90
15922560--15922586	2	13.5	2	100	0	54	48	0	0	51	1.00
15923386--15923424	10	3.9	10	96	0	69	15	20	23	41	1.90
15925232--15925336	30	3.5	30	77	20	119	47	2	0	48	1.23
15925222--15925366	62	2.4	60	78	11	161	44	4	4	46	1.41
15925375--15925417	10	4.6	9	81	18	52	32	0	0	67	0.91
15925413--15925454	16	2.5	17	80	7	59	38	7	0	54	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15925986--15926057	23	3.2	23	84	5	76	59	4	1	34	1.25
15927056--15927098	20	2.2	19	87	4	59	53	0	0	46	1.00
15927047--15927098	19	2.7	19	80	8	61	50	0	1	48	1.12
15927820--15927872	14	4.0	13	79	15	56	45	0	0	54	0.99
15927934--15927986	21	2.3	23	78	15	58	56	0	9	33	1.32
15927935--15927989	23	2.5	22	78	18	53	56	0	9	34	1.31
15928995--15929031	10	3.6	10	85	7	56	70	0	0	29	0.88
15928995--15929061	21	3.1	21	81	12	82	65	0	0	34	0.93
15928997--15929071	23	3.4	22	82	10	75	68	0	0	32	0.90
15929094--15929152	29	2.0	29	83	6	73	50	0	1	47	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105