genome.fa.s135.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  33  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6469077--6469112	17	2.3	15	90	9	54	52	0	0	47	1.00
6469078--6469154	37	2.1	36	83	7	93	51	1	1	45	1.17
6469223--6469261	21	1.9	20	89	5	60	48	0	0	51	1.00
6471190--6471219	16	1.9	15	93	6	51	56	3	0	40	1.16
6473041--6473827	395	2.0	396	94	0	1396	39	16	12	31	1.86
6474069--6474108	3	13.0	3	85	15	55	32	0	0	67	0.91
6474070--6474109	19	2.1	19	90	9	64	30	0	0	70	0.88
6474073--6474137	23	3.0	23	80	14	68	33	0	1	64	1.03
6474399--6474457	31	1.9	31	86	6	84	38	1	6	52	1.38
6475564--6475609	13	3.7	12	80	8	56	19	2	15	63	1.41
6475570--6475617	25	1.9	25	83	8	62	22	2	16	58	1.49
6495355--6495397	22	2.0	22	95	0	77	32	11	11	44	1.77
6499587--6499630	22	2.0	22	90	0	70	34	11	11	43	1.77
6506664--6506697	11	3.1	11	100	0	68	17	17	17	47	1.84
6509811--6509849	19	2.1	19	95	0	69	41	10	7	41	1.68
6510819--6510851	8	4.1	8	100	0	66	27	36	0	36	1.57
6514804--6514834	15	2.1	15	100	0	62	19	32	0	48	1.49
6519122--6519163	22	1.9	22	90	0	66	33	11	9	45	1.73
6519375--6519434	25	2.5	23	89	5	84	13	30	18	38	1.89
6523079--6523120	22	1.9	22	90	0	66	33	11	9	45	1.73
6530462--6530523	25	2.6	25	87	5	83	40	12	22	24	1.89
6534613--6534710	51	1.9	50	87	2	142	48	5	8	37	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6534631--6534728	50	1.9	51	81	6	119	52	6	8	33	1.56
6535549--6535614	29	2.3	29	78	5	71	75	10	6	7	1.17
6536463--6536505	18	2.3	18	88	4	59	32	0	0	67	0.91
6536554--6536600	20	2.2	23	85	11	64	25	4	14	55	1.58
6537152--6537191	17	2.4	17	91	0	62	25	7	5	62	1.42
6537202--6537247	21	2.2	21	92	7	76	23	10	0	65	1.24
6541255--6541291	18	2.0	18	89	5	56	72	0	2	24	0.97
6541592--6541749	15	10.9	15	66	20	70	49	29	1	19	1.59
6541637--6541737	38	2.7	37	80	10	105	47	29	1	20	1.61
6541595--6541653	24	2.6	23	76	7	68	47	30	1	20	1.60
6541644--6541696	23	2.3	23	93	0	88	50	28	1	18	1.57
6541708--6541764	15	3.7	15	85	2	51	52	21	3	22	1.62
6543129--6543295	60	2.8	60	80	12	202	35	11	4	47	1.62
6543250--6543334	40	2.2	40	86	2	118	37	12	3	45	1.60
6543291--6543406	58	2.0	59	84	5	155	38	10	5	45	1.61
6543205--6543394	98	1.9	101	81	9	230	37	11	5	46	1.62
6544028--6544088	28	2.1	29	85	8	81	40	11	8	39	1.71
6545028--6545066	20	2.0	20	89	0	60	30	12	12	43	1.81
6544986--6545249	108	2.4	107	87	1	368	36	14	12	36	1.84
6546606--6546658	19	2.8	19	83	11	65	5	18	0	75	0.99
6546606--6546745	18	7.3	19	72	19	78	5	20	0	73	1.03
6546612--6546665	26	2.2	24	86	6	72	7	16	0	75	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6546608--6546732	7	17.4	7	68	19	62	5	19	0	75	1.00
6546667--6546734	27	2.4	28	85	7	84	4	19	0	76	0.95
6546685--6546745	21	2.9	22	88	7	83	3	19	0	77	0.91
6546606--6546744	58	2.4	56	80	12	167	5	20	0	74	1.02
6547104--6547146	5	8.8	5	80	14	54	2	13	2	81	0.89
6547664--6547707	23	2.0	23	86	4	63	47	15	9	27	1.76
6550605--6550631	14	1.9	14	100	0	54	14	14	18	51	1.76
6552260--6552302	17	2.6	16	82	7	50	37	0	2	60	1.10
6564678--6564774	46	2.1	46	84	3	124	35	10	11	43	1.75
6569605--6569999	128	3.0	130	92	5	627	49	10	8	31	1.67
6571222--6571290	25	2.9	24	72	18	63	36	8	8	46	1.66
6571287--6571340	22	2.5	22	78	6	65	33	1	16	48	1.57
6571216--6571430	112	1.9	112	85	1	297	35	6	11	46	1.67
6579087--6579125	15	2.6	15	92	8	62	23	12	20	43	1.86
6580045--6580108	17	3.9	17	71	17	55	53	6	7	32	1.55
6580099--6580129	16	1.9	16	93	0	53	70	6	6	16	1.29
6583720--6583933	110	1.9	112	90	1	342	35	5	12	47	1.63
6588916--6588957	22	1.9	22	85	9	59	33	4	4	57	1.41
6588922--6588959	15	2.7	14	84	11	51	31	5	7	55	1.51
6589024--6589057	11	3.2	11	87	4	52	35	20	14	29	1.93
6592827--6592991	85	2.0	84	85	5	228	35	8	24	30	1.86
6595638--6595892	63	4.0	63	85	4	300	45	9	7	38	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6595976--6596073	49	2.0	50	82	9	121	38	9	11	40	1.73
6596026--6596158	63	2.1	63	87	2	187	42	9	10	37	1.73
6600867--6600902	19	1.9	19	88	5	56	47	0	5	47	1.25
6611275--6611334	29	2.1	29	93	0	102	40	13	10	36	1.78
6613997--6614028	15	2.1	15	94	0	55	78	0	3	18	0.89
6618072--6618161	30	3.0	29	82	9	110	41	4	1	53	1.28
6621764--6621806	19	2.3	18	80	4	50	79	9	2	9	1.03
6621801--6621828	13	2.2	13	100	0	56	71	0	14	14	1.15
6621986--6622036	6	8.5	6	86	0	66	50	7	0	41	1.31
6621986--6622036	4	12.8	4	91	0	66	50	7	0	41	1.31
6624954--6625283	170	1.9	170	98	0	633	40	19	12	28	1.88
6627809--6627855	3	15.7	3	100	0	94	31	0	0	68	0.90
6628550--6628606	21	2.7	22	81	13	66	31	10	8	49	1.68
6628587--6628639	21	2.5	21	74	17	56	26	11	13	49	1.75
6629106--6629255	22	6.9	22	75	6	119	40	8	6	45	1.58
6629106--6629268	44	3.7	44	77	8	154	41	7	5	44	1.57
6629267--6629367	22	4.6	22	73	9	80	37	8	5	47	1.59
6631056--6631323	140	1.9	140	93	1	457	32	14	11	40	1.83
6633032--6633210	67	2.7	66	79	11	170	25	10	6	58	1.55
6633032--6633210	68	2.7	67	82	8	188	25	10	6	58	1.55
6636181--6636219	3	13.0	3	100	0	78	66	0	0	33	0.92
6639804--6639849	23	1.9	25	86	8	69	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6639870--6639941	23	3.1	23	70	9	65	50	0	1	48	1.09
6640158--6640217	31	1.9	31	86	6	86	33	0	6	60	1.23
6640246--6640281	18	2.0	18	94	0	63	25	16	13	44	1.85
6644839--6644882	22	2.0	23	86	4	63	20	2	20	56	1.52
6645004--6645059	17	3.3	17	68	9	51	37	8	14	39	1.77
6644987--6645082	34	2.8	34	85	1	120	40	8	11	39	1.71
6648475--6648829	134	2.7	133	82	4	419	26	15	20	37	1.92
6654448--6654546	33	2.9	33	81	4	126	28	5	31	35	1.79
6654527--6654567	21	2.0	21	90	0	64	34	2	36	26	1.70
6654449--6654573	18	6.9	18	72	13	96	29	4	33	32	1.78
6654917--6654953	6	6.2	6	90	0	56	29	48	0	21	1.50
6654919--6654954	18	2.0	18	94	0	63	27	47	0	25	1.52
6658363--6658411	25	1.9	26	91	4	82	40	10	2	46	1.49
6658636--6658673	20	1.9	19	94	5	67	63	2	0	34	1.09
6658880--6658961	20	4.1	20	66	19	53	21	63	0	14	1.30
6658926--6659071	36	3.9	36	79	18	158	23	63	0	11	1.32
6659011--6659071	18	3.3	18	75	11	70	22	65	1	9	1.31
6660090--6660131	21	2.0	20	86	4	57	35	21	7	35	1.81
6660388--6660467	39	2.1	39	92	4	135	36	17	12	33	1.87
6662397--6662633	125	1.9	123	83	8	302	34	11	12	41	1.80
6664488--6664727	76	3.0	80	80	4	231	23	8	23	44	1.81
6668094--6668643	281	2.0	282	85	2	757	37	14	13	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6668376--6668952	306	1.9	304	82	4	723	37	13	13	35	1.84
6670288--6670325	20	1.9	20	89	10	60	63	2	5	28	1.30
6672509--6672565	23	2.5	23	75	11	55	73	3	1	21	1.07
6672722--6672919	43	4.6	43	73	9	152	43	13	10	32	1.78
6672957--6673052	42	2.3	42	85	5	131	47	15	5	31	1.67
6676896--6676947	23	2.2	25	82	6	63	50	15	11	23	1.76
6682630--6682805	22	8.1	22	69	13	89	53	3	6	36	1.45
6682636--6682763	64	2.0	67	83	7	165	51	3	7	38	1.45
6684455--6684493	11	3.5	11	85	3	51	64	0	0	35	0.94
6684109--6684492	209	1.9	205	83	7	510	43	8	12	35	1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105