genome.fa.s135.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  49  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9392603--9392678	38	2.0	40	92	5	129	30	19	19	30	1.97
9393452--9393858	144	2.9	144	80	8	412	34	14	8	42	1.77
9397720--9397863	77	1.9	77	86	2	209	41	14	14	29	1.85
9397762--9397812	22	2.3	22	83	6	59	39	17	11	31	1.86
9397931--9398282	151	2.3	151	76	9	338	31	13	15	39	1.86
9398880--9398919	18	2.2	18	86	8	55	35	7	15	42	1.75
9399625--9399656	5	6.4	5	100	0	64	62	0	37	0	0.95
9400341--9400377	19	1.9	19	88	0	56	2	18	0	78	0.87
9403621--9403658	19	2.0	19	100	0	76	31	10	10	47	1.72
9405845--9405899	27	2.0	27	89	0	83	36	18	12	32	1.88
9406078--9406148	34	2.1	35	91	2	117	40	12	19	26	1.88
9410753--9410795	20	2.2	20	86	0	59	32	13	13	39	1.85
9415548--9415586	12	3.2	12	78	7	51	38	17	12	30	1.88
9415547--9415597	25	2.0	25	96	0	93	41	15	9	33	1.80
9427892--9427961	12	5.8	12	74	15	56	2	15	4	77	1.05
9427897--9427943	24	1.9	25	91	4	78	4	14	6	74	1.17
9428874--9428920	16	2.8	17	77	3	60	68	12	8	10	1.40
9443596--9443624	10	2.7	11	94	5	51	0	17	0	82	0.66
9444636--9444678	20	2.2	20	95	0	77	48	13	16	20	1.80
9446053--9446081	14	2.0	15	93	6	51	75	6	6	10	1.17
9455914--9455971	30	1.9	30	100	0	116	15	17	17	50	1.79
9458802--9458862	29	2.1	29	84	3	77	72	3	16	8	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9465806--9465868	7	8.9	7	77	3	54	22	1	31	44	1.62
9465827--9465945	57	2.1	57	84	3	150	22	1	28	47	1.61
9465829--9465947	29	4.1	29	80	8	109	23	1	26	47	1.61
9468279--9468320	21	2.0	21	90	4	68	73	9	4	11	1.22
9472444--9472507	32	2.0	32	82	11	78	40	1	25	32	1.65
9472751--9472783	16	1.9	18	88	11	52	15	0	6	78	0.93
9477684--9478084	200	2.0	200	95	0	721	33	18	15	32	1.92
9478103--9478142	20	2.0	21	85	5	55	12	7	7	72	1.27
9490874--9490899	11	2.4	11	100	0	52	92	0	0	7	0.39
9490930--9491563	58	10.9	58	85	7	833	34	13	7	45	1.71
9491577--9491669	9	9.8	9	75	17	82	80	1	4	13	0.91
9491577--9491680	5	20.6	5	74	20	92	78	0	3	16	0.94
9491577--9491716	27	5.2	25	72	19	95	75	2	2	18	1.05
9491577--9491669	38	2.5	36	81	13	107	80	1	4	13	0.91
9492668--9492771	6	16.8	6	73	16	88	76	1	2	18	1.00
9492668--9492771	11	8.4	12	75	15	88	76	1	2	18	1.00
9492668--9492777	41	2.7	41	81	5	116	76	1	2	19	1.00
9492705--9492778	36	2.1	36	85	7	100	75	2	2	18	1.04
9492941--9492982	7	5.4	8	88	11	61	0	0	11	88	0.53
9492941--9492982	16	2.7	16	92	3	68	0	0	11	88	0.53
9492941--9492983	15	2.8	16	86	13	63	0	0	13	86	0.58
9492990--9493335	41	8.3	42	87	1	378	37	22	15	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9493276--9493398	63	2.0	63	90	0	192	37	21	13	27	1.91
9493335--9493434	41	2.4	42	89	1	148	34	22	18	26	1.96
9493231--9493434	104	2.0	105	89	1	311	36	22	15	25	1.94
9494383--9494456	24	3.1	23	78	12	80	12	13	0	74	1.08
9494399--9494439	15	2.7	15	100	0	82	12	12	0	75	1.05
9494403--9494456	17	3.3	17	85	14	62	11	11	0	77	0.99
9494390--9494472	8	10.2	8	69	20	57	13	13	0	73	1.10
9494395--9494447	13	4.3	11	78	21	52	11	11	0	77	1.00
9494429--9494473	17	2.6	17	92	0	72	13	11	0	75	1.05
9494468--9494506	17	2.2	17	86	9	51	28	15	10	46	1.78
9501664--9501694	16	2.0	16	93	6	55	58	6	16	19	1.59
9504846--9505188	57	5.9	56	80	14	360	35	14	6	43	1.72
9504847--9505187	59	5.9	56	81	10	359	35	14	6	43	1.71
9504845--9505187	116	3.0	116	86	7	468	35	14	6	43	1.72
9505196--9505283	44	2.0	46	84	8	119	78	3	4	13	1.04
9505201--9505283	37	2.3	36	81	10	89	79	3	3	13	1.00
9506154--9506223	21	3.3	19	75	21	59	70	5	4	20	1.26
9506165--9506201	15	2.5	15	86	0	56	70	5	5	18	1.27
9506346--9506455	6	19.0	6	74	10	88	77	3	1	17	1.00
9506346--9506455	15	6.8	16	69	14	73	77	3	1	17	1.00
9506395--9506456	17	3.7	15	73	26	54	75	4	1	17	1.05
9506346--9506455	34	3.2	35	83	8	118	77	3	1	17	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9506795--9506847	24	2.2	24	93	0	88	37	1	1	58	1.20
9512582--9512617	18	2.0	18	100	0	72	44	5	22	27	1.75
9529446--9529495	13	3.9	13	89	7	68	16	6	24	54	1.64
9529458--9529507	26	1.9	26	83	0	64	20	10	20	50	1.76
9531603--9531651	25	2.0	24	84	4	62	24	6	0	69	1.11
9532325--9532406	33	2.5	33	83	0	101	35	12	17	35	1.87
9532451--9532567	35	3.3	35	91	2	182	36	20	10	32	1.86
9532857--9532937	22	3.8	21	76	11	74	24	20	20	33	1.97
9533786--9533819	17	2.0	17	88	0	50	26	26	14	32	1.95
9538181--9538218	14	2.7	14	84	8	51	73	0	13	13	1.09
9538600--9538662	24	2.7	22	77	18	56	60	11	7	20	1.55
9543146--9543189	19	2.2	20	92	4	72	13	4	9	72	1.24
9548476--9548506	16	1.9	16	93	0	53	80	0	9	9	0.90
9546990--9548537	778	2.0	767	89	3	2399	37	12	16	33	1.86
9549671--9549702	17	1.9	16	93	6	55	59	9	0	31	1.29
9559445--9559515	20	3.6	20	96	3	126	23	28	4	43	1.72
9559628--9559675	10	4.8	10	76	7	53	47	20	8	22	1.77
9560698--9560732	16	2.1	17	94	5	63	2	0	11	85	0.69
9563549--9563615	16	4.2	16	73	7	55	44	10	4	40	1.59
9566093--9566211	62	1.9	62	85	0	166	26	17	15	41	1.89
9567613--9567668	24	2.3	24	84	0	76	23	3	3	69	1.20
9567793--9567827	16	2.2	16	94	0	61	5	0	40	54	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9568983--9569022	19	2.1	19	86	9	55	57	0	0	42	0.98
9568992--9569027	18	1.9	19	88	5	56	50	0	0	50	1.00
9577388--9577429	6	7.2	6	94	5	77	33	0	16	50	1.46
9577388--9577429	17	2.4	18	92	8	77	33	0	16	50	1.46
9581567--9581616	22	2.2	23	83	16	61	62	6	0	32	1.20
9584186--9584240	22	2.5	22	82	11	76	56	0	1	41	1.10
9592779--9592810	14	2.3	14	100	0	64	40	6	0	53	1.26
9593079--9593132	16	3.5	15	78	14	56	74	0	24	1	0.92
9593082--9593120	14	2.7	15	84	11	55	69	0	30	0	0.89
9593138--9593173	15	2.4	15	90	0	54	52	2	0	44	1.15
9593340--9593386	15	3.1	15	81	6	51	65	0	27	6	1.16
9594588--9594617	8	3.8	8	90	0	51	0	43	6	50	1.28
9595002--9595034	2	16.5	2	100	0	66	0	48	0	51	1.00
9595034--9595064	2	15.5	2	93	0	53	45	0	3	51	1.17
9596375--9596415	21	2.0	21	85	9	57	51	4	0	43	1.23
9596859--9596912	25	2.2	25	83	6	65	40	9	1	48	1.46
9599128--9599160	12	2.5	13	90	9	50	15	9	15	60	1.58
9599662--9599697	3	12.0	3	100	0	72	66	0	0	33	0.92
9600290--9600322	11	3.0	11	87	12	50	36	0	3	60	1.12
9607486--9607511	3	8.7	3	100	0	52	65	0	34	0	0.93
9608002--9608046	21	2.2	21	88	7	67	35	6	0	57	1.25
9608080--9608119	17	2.4	17	86	0	53	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9612845--9612887	14	3.0	15	86	10	63	81	0	18	0	0.69
9612848--9612885	16	2.5	15	91	4	58	84	0	15	0	0.63
9612845--9612885	15	2.9	14	89	10	57	82	0	17	0	0.66
9614104--9614180	24	3.2	23	78	17	77	77	0	18	3	0.91
9614105--9614180	28	2.7	28	77	18	77	78	0	17	3	0.89
9614104--9614180	20	3.8	21	77	19	83	77	0	18	3	0.91
9614138--9614176	11	3.5	11	86	13	53	82	0	17	0	0.68
9614104--9614174	9	8.0	9	79	19	62	77	0	18	4	0.93
9616042--9616208	40	4.2	40	77	4	149	34	14	12	37	1.85
9616375--9616470	22	4.4	22	73	2	86	29	18	15	36	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105