genome.fa.s135.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  59  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10952508--10955069	181	14.2	180	74	10	1377	41	10	7	40	1.68
10952518--10954984	898	2.7	890	78	7	2357	41	10	7	40	1.68
10955745--10956129	182	2.1	178	80	6	409	43	9	8	38	1.68
10956663--10956700	19	2.1	18	85	9	51	39	7	2	50	1.46
10956570--10957720	359	3.2	358	75	8	809	41	10	7	40	1.67
10957483--10957896	167	2.4	170	80	8	419	42	7	8	41	1.63
10956661--10959339	361	7.5	358	75	7	1632	41	9	8	41	1.67
10956543--10959339	181	15.6	179	75	7	1828	41	9	8	41	1.67
10959517--10959905	183	2.1	182	79	4	401	41	11	8	37	1.73
10959637--10960199	181	3.1	179	76	10	421	42	9	9	39	1.70
10960231--10960298	32	2.1	32	94	0	118	25	10	7	57	1.57
10960423--10960563	18	8.2	17	70	15	71	21	1	2	75	0.99
10960423--10960505	6	14.5	6	85	9	70	18	0	2	79	0.84
10960423--10960530	27	4.4	25	73	19	77	20	0	1	76	0.93
10960452--10960495	3	15.3	3	81	9	56	25	0	0	75	0.81
10960520--10960564	19	2.4	19	88	7	65	24	2	2	71	1.09
10960522--10960559	15	2.5	16	87	8	53	23	2	2	71	1.12
10960526--10960563	4	9.5	4	83	11	51	23	2	2	71	1.12
10960693--10960735	15	3.1	15	77	16	56	23	0	4	72	1.04
10961260--10961290	15	2.0	16	93	6	55	64	0	35	0	0.94
10961631--10961724	12	8.3	11	76	14	77	13	4	2	79	0.97
10961630--10961724	18	5.6	17	74	18	74	13	5	2	78	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10961642--10961694	8	6.2	8	80	20	63	11	1	1	84	0.77
10961670--10961725	30	1.9	28	89	7	85	14	5	1	78	1.00
10961743--10962069	113	2.9	113	85	6	426	42	7	14	35	1.74
10961744--10962070	57	5.8	56	86	5	392	41	7	14	36	1.74
10972483--10972534	21	2.6	21	81	6	63	80	0	9	9	0.90
10973535--10973715	42	4.5	41	84	8	205	24	17	22	36	1.94
10973561--10973715	36	4.0	38	85	10	181	23	17	22	36	1.95
10973561--10973715	76	2.0	80	87	5	228	23	17	22	36	1.95
10975134--10977049	177	10.8	179	74	10	795	41	10	8	39	1.69
10975057--10976081	359	2.9	357	77	6	776	41	10	7	40	1.69
10976116--10979657	181	19.9	176	71	13	1297	40	10	8	40	1.70
10976645--10976983	189	1.8	185	89	2	534	41	9	7	41	1.67
10976922--10977201	154	1.8	155	84	5	388	39	11	7	41	1.69
10978013--10978060	25	1.9	25	86	0	69	37	10	8	43	1.69
10978518--10978550	18	1.9	17	88	11	50	33	6	12	48	1.65
10978465--10978765	153	2.0	153	82	3	365	40	9	7	42	1.65
10978618--10979672	180	5.8	179	74	10	778	40	10	7	41	1.67
10979159--10979190	13	2.4	14	94	5	57	71	0	0	28	0.86
10979518--10979816	146	2.1	144	89	6	453	36	12	10	40	1.76
10979985--10980377	182	2.2	181	81	8	442	45	8	8	37	1.65
10979895--10980789	488	1.8	490	83	3	1192	42	9	9	38	1.69
10980396--10981449	180	5.8	180	76	5	844	42	9	9	38	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10980396--10981449	361	2.9	357	81	3	1080	42	9	9	38	1.70
10980499--10981449	182	5.3	180	77	5	735	43	9	9	38	1.69
10981467--10981920	180	2.5	182	78	7	465	42	8	9	39	1.68
10982086--10983283	360	3.3	360	76	5	902	39	10	9	40	1.72
10981959--10983451	182	8.3	177	74	9	585	39	10	8	41	1.71
10983336--10983570	119	2.0	119	84	5	305	33	9	9	47	1.69
10983813--10984095	155	1.8	156	87	2	426	37	13	7	41	1.73
10983966--10985203	176	7.0	174	72	10	608	41	10	8	39	1.69
10984652--10984994	180	1.9	181	79	5	390	42	10	8	38	1.70
10985114--10985150	18	2.0	19	89	5	58	32	13	8	45	1.73
10985633--10985670	18	2.2	17	86	9	51	52	5	5	36	1.47
10985320--10986303	177	5.5	178	77	7	789	41	7	8	42	1.62
10986300--10986351	21	2.9	16	70	24	50	21	11	5	61	1.50
10986305--10986349	21	2.1	22	91	4	74	22	8	4	64	1.40
10986367--10988827	181	13.8	181	73	8	1339	40	8	9	41	1.66
10986433--10991458	540	9.4	540	72	11	1479	40	8	9	41	1.68
10988812--10988838	11	2.5	11	100	0	54	37	0	7	55	1.28
10989309--10990201	182	4.9	180	75	5	780	38	9	9	42	1.70
10989311--10990003	361	1.9	363	80	2	813	39	9	8	41	1.68
10990226--10991321	181	6.1	180	76	7	760	41	8	9	39	1.69
10990255--10991352	363	3.1	358	78	8	1068	41	8	9	39	1.69
10990749--10992298	806	1.9	808	78	8	1650	41	8	9	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10991561--10995299	180	20.8	180	74	7	1954	40	8	10	41	1.68
10991559--11003229	361	32.3	362	69	13	4268	40	7	10	41	1.68
10991559--10994949	893	3.8	889	76	8	2179	40	7	10	41	1.68
10995151--10995468	162	2.0	163	81	5	374	40	6	11	42	1.65
10995303--10998799	180	19.3	178	70	11	1538	39	7	10	42	1.69
10997124--10997184	31	1.9	32	90	9	99	39	0	6	54	1.27
10997317--10998799	177	8.3	176	73	11	840	38	7	11	42	1.70
10997155--10998795	181	9.1	177	73	10	918	38	7	11	42	1.70
10998849--11001816	181	16.5	180	74	6	1653	40	8	9	41	1.68
10998858--11001763	358	8.1	359	75	6	1869	40	8	9	41	1.68
10998862--11001730	539	5.3	535	77	6	2127	40	8	9	41	1.68
11000963--11001296	168	2.0	167	82	8	401	43	7	9	40	1.65
11001854--11003229	180	7.6	179	77	4	1017	41	8	9	41	1.66
11003741--11005010	180	7.1	180	75	7	903	40	7	9	41	1.66
11003911--11004953	531	2.0	530	80	5	1207	41	6	10	41	1.66
11004474--11004971	182	2.7	179	73	9	436	40	7	10	41	1.66
11005106--11007591	181	13.9	181	75	8	1869	40	7	9	42	1.65
11005106--11008453	362	9.4	352	73	10	1747	40	8	9	41	1.66
11007444--11007741	158	1.9	157	84	6	397	40	8	7	43	1.64
11007601--11007936	178	1.9	181	83	3	446	42	10	6	41	1.64
11007608--11008391	181	4.3	181	75	5	441	41	8	8	41	1.66
11008502--11011016	180	14.1	179	75	10	1631	40	7	9	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11008511--11011016	361	7.0	356	74	10	1520	40	7	9	41	1.68
11011524--11011568	23	2.0	23	95	0	81	48	11	4	35	1.59
11011562--11012311	181	4.2	179	78	6	655	41	8	9	40	1.69
11012881--11013841	358	2.7	360	82	3	1098	42	7	9	41	1.65
11012821--11013841	181	5.7	181	76	6	854	42	7	9	41	1.65
11012855--11013869	182	5.6	180	74	7	784	41	7	9	41	1.66
11013926--11013984	31	1.9	31	85	0	82	50	6	1	40	1.39
11014429--11015284	181	4.8	180	77	5	766	40	9	8	41	1.67
11015319--11016325	537	1.9	526	87	1	1424	41	11	7	39	1.69
11015630--11015967	182	1.9	181	80	8	407	40	12	8	38	1.72
11016572--11019052	181	13.9	180	74	8	1484	41	9	8	40	1.68
11016573--11018418	180	10.3	180	74	8	1024	42	9	8	40	1.67
11016929--11018985	719	2.9	720	79	6	1788	42	9	8	39	1.67
11018274--11018309	16	2.1	17	90	10	56	38	11	5	44	1.63
11016510--11022347	181	33.0	176	69	14	1255	41	10	8	40	1.69
11018439--11019051	174	3.5	178	77	11	560	41	10	7	40	1.67
11019054--11022347	181	18.6	177	71	12	1508	41	10	8	39	1.69
11019058--11020524	180	8.1	180	77	8	673	41	9	8	40	1.68
11019121--11024958	542	11.0	536	72	12	1730	42	9	8	40	1.68
11020082--11021030	516	1.8	517	80	5	1110	42	10	8	38	1.70
11020916--11021560	349	1.8	349	81	4	789	41	10	7	40	1.68
11020783--11022295	522	2.9	527	78	6	1310	41	10	8	39	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11021806--11022315	182	2.8	181	77	11	488	41	9	7	40	1.67
11022227--11022477	133	1.9	133	83	1	324	43	8	7	40	1.64
11022052--11022631	311	1.9	312	80	7	674	42	8	8	40	1.66
11022348--11024971	181	14.5	181	73	9	1449	42	8	7	40	1.65
11022806--11022838	18	1.9	17	88	11	50	42	6	3	48	1.43
11022348--11024993	361	7.3	358	74	9	1657	42	8	7	40	1.65
11022348--11024992	714	3.7	710	76	8	1914	42	8	7	40	1.65
11024468--11024525	25	2.3	25	96	0	107	27	10	15	46	1.78
11025198--11025712	182	2.8	182	77	6	409	39	8	9	41	1.69
11026002--11026252	133	1.9	133	85	0	349	39	7	9	44	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105