genome.fa.s135.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  30  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6029672--6029721	16	3.2	16	75	16	59	36	6	16	42	1.72
6029346--6029790	220	2.0	220	95	0	802	37	9	14	38	1.79
6036517--6036551	18	2.0	17	88	5	52	77	0	2	20	0.90
6042451--6042490	13	2.9	13	82	10	53	27	0	5	67	1.11
6042447--6042490	14	3.0	15	80	12	56	27	0	6	65	1.17
6042407--6042490	30	2.9	30	79	10	77	28	2	5	63	1.31
6043113--6043154	21	2.0	21	95	0	75	16	9	35	38	1.81
6044137--6044183	21	2.3	20	82	7	58	34	0	0	65	0.93
6044137--6044183	22	2.2	20	82	10	58	34	0	0	65	0.93
6044291--6044343	28	1.9	27	85	11	72	28	1	5	64	1.27
6044545--6044596	26	2.0	26	84	3	68	59	1	3	34	1.27
6044872--6044912	20	2.0	20	95	0	73	43	0	4	51	1.23
6044872--6044925	22	2.6	20	88	5	72	40	0	5	53	1.24
6047137--6047178	22	2.0	21	85	4	57	33	4	4	57	1.41
6053157--6053218	20	3.1	20	76	0	70	48	22	0	29	1.51
6053142--6053216	9	7.9	9	72	11	51	45	25	0	29	1.54
6053136--6053219	40	2.1	39	84	6	107	47	22	0	29	1.52
6053795--6054100	160	1.9	160	83	1	398	38	19	6	35	1.78
6055988--6056025	7	5.6	7	85	14	53	7	0	44	47	1.32
6057859--6057964	49	2.2	49	86	1	142	33	13	16	37	1.87
6058643--6058676	16	2.2	15	89	5	50	70	8	14	5	1.31
6059694--6059788	40	2.4	39	79	8	104	37	12	9	40	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6059724--6059926	78	2.6	78	77	12	200	39	12	9	37	1.77
6059721--6059994	40	6.9	40	71	8	184	40	12	10	36	1.78
6059719--6060014	119	2.5	120	77	8	289	39	11	11	36	1.79
6061982--6062044	25	2.5	26	80	14	71	1	19	1	77	0.93
6061982--6062019	5	7.6	5	82	11	51	0	21	0	78	0.74
6062003--6062075	28	2.6	29	86	6	96	8	12	1	78	1.03
6062001--6062071	29	2.4	29	77	15	74	7	14	1	77	1.04
6063255--6063297	21	2.2	19	91	8	68	13	18	0	67	1.23
6066125--6066219	37	2.6	37	82	0	118	37	12	18	30	1.88
6066127--6066318	38	5.1	38	83	0	172	35	8	20	35	1.83
6068174--6068213	18	2.2	19	86	4	55	47	12	20	20	1.81
6068258--6068599	27	13.1	26	74	11	157	18	1	32	47	1.57
6068302--6068560	7	39.5	6	69	17	119	20	0	30	48	1.55
6068258--6068554	13	22.6	13	72	10	151	19	1	31	48	1.56
6076949--6077115	88	1.9	89	87	3	246	31	16	13	38	1.87
6078057--6078393	143	2.3	142	84	4	446	39	15	16	29	1.89
6080305--6080341	18	2.0	19	89	5	58	21	16	13	48	1.80
6085268--6085315	21	2.3	20	79	13	53	41	2	16	39	1.60
6089042--6089076	16	2.2	16	89	0	52	34	14	8	42	1.76
6093941--6093982	20	2.0	21	86	4	59	54	0	0	45	0.99
6094542--6094600	29	2.0	29	90	0	91	15	5	25	54	1.61
6094612--6094657	17	2.5	17	86	13	56	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6095046--6095071	11	2.4	11	100	0	52	84	0	0	15	0.62
6096014--6096081	24	3.0	24	77	14	72	39	1	0	58	1.07
6096475--6096504	14	2.1	15	93	6	53	40	6	0	53	1.27
6097276--6097337	30	2.1	30	84	0	79	54	1	0	43	1.09
6100006--6100331	103	3.2	103	84	3	352	40	9	7	42	1.66
6102837--6102934	49	2.0	49	89	0	151	38	14	7	39	1.73
6104170--6104199	14	2.1	14	100	0	60	36	13	0	50	1.42
6105235--6105272	15	2.5	15	100	0	76	47	18	21	13	1.82
6105243--6105282	21	1.9	21	89	0	62	42	20	20	17	1.89
6107885--6107919	17	2.0	17	88	5	52	65	2	14	17	1.38
6112445--6112950	130	3.9	129	82	4	592	47	7	7	37	1.60
6112445--6112951	260	2.0	258	84	6	668	47	7	7	37	1.60
6114465--6114506	19	2.2	19	86	4	57	47	4	0	47	1.23
6115479--6115503	12	2.1	12	100	0	50	64	0	0	36	0.94
6116326--6116373	8	5.8	8	85	7	51	10	4	8	77	1.12
6116320--6116363	8	5.2	8	81	10	52	9	2	6	81	0.94
6116325--6116373	17	2.9	17	81	6	55	10	4	8	77	1.10
6117136--6117172	6	6.2	6	87	0	56	62	0	0	37	0.96
6117257--6117287	3	10.3	3	100	0	62	67	0	0	32	0.91
6117905--6117935	2	15.5	2	93	0	53	51	3	0	45	1.17
6134486--6134510	13	1.9	13	100	0	50	24	0	0	76	0.80
6134589--6134626	20	2.0	20	94	5	69	44	0	10	44	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6135104--6135159	20	2.8	20	83	0	76	42	1	25	30	1.65
6136147--6136204	28	2.1	28	87	6	82	3	13	3	79	0.99
6136466--6136499	16	2.1	16	88	0	50	8	14	0	76	1.01
6136481--6136530	22	2.5	20	83	9	66	4	20	0	76	0.95
6136481--6136530	20	2.4	22	78	21	63	4	20	0	76	0.95
6141383--6141434	22	2.3	22	90	3	77	67	13	7	11	1.42
6141410--6141444	18	1.9	18	88	11	54	62	20	2	14	1.43
6141888--6141934	22	2.1	22	88	7	69	78	2	2	17	0.94
6146918--6147001	34	2.5	35	80	5	93	72	3	1	22	1.07
6147662--6147690	6	4.8	6	100	0	58	13	0	0	86	0.58
6147688--6147718	16	1.9	16	93	0	53	9	3	9	77	1.10
6147725--6147780	11	5.2	11	75	16	55	69	1	5	23	1.18
6147725--6147763	20	1.9	21	89	5	62	69	0	5	25	1.09
6147746--6147786	21	2.0	22	85	9	59	70	2	4	21	1.18
6154949--6154982	11	3.1	11	86	0	50	17	8	8	64	1.47
6157020--6157056	19	2.0	19	89	5	58	24	24	8	43	1.81
6159598--6159690	30	3.1	30	81	6	107	45	4	18	32	1.69
6159846--6159874	14	2.1	14	100	0	58	79	0	20	0	0.74
6159450--6160368	458	2.0	457	92	1	1531	39	11	15	34	1.83
6166744--6166790	24	2.0	24	82	0	58	25	0	0	74	0.82
6167250--6167280	16	1.9	16	93	0	53	48	0	0	51	1.00
6168179--6168216	2	19.0	2	100	0	76	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6168793--6168845	21	2.5	21	75	3	52	33	13	0	52	1.40
6170327--6170358	2	16.0	2	100	0	64	50	0	0	50	1.00
6172112--6172149	17	2.2	17	86	9	51	5	18	2	73	1.14
6172220--6172255	16	2.2	16	90	0	54	41	0	8	50	1.33
6176837--6176889	22	2.4	22	90	0	88	24	28	16	30	1.97
6187391--6187430	17	2.4	16	84	15	55	22	0	15	62	1.32
6187995--6188052	4	14.2	4	81	3	53	15	1	8	74	1.14
6187990--6188053	12	5.2	12	79	3	65	14	3	10	71	1.25
6194371--6194414	22	2.0	22	86	0	61	34	18	15	31	1.92
6194403--6194464	22	2.8	22	85	0	79	35	24	8	32	1.85
6194933--6195092	83	1.9	84	82	6	200	25	14	20	40	1.90
6195110--6195253	43	3.3	43	77	2	135	26	8	16	48	1.74
6195933--6195978	4	11.2	4	86	4	56	17	0	4	78	0.91
6202503--6202563	23	2.6	23	85	10	79	73	1	4	19	1.10
6202629--6202680	18	2.9	18	83	8	70	78	1	3	15	0.98
6202502--6202683	12	15.4	11	68	17	73	70	1	6	21	1.18
6203364--6203406	19	2.3	18	80	11	50	65	6	4	23	1.37
6203627--6203665	8	4.6	8	93	6	60	64	0	2	33	1.08
6203634--6203722	8	10.9	8	74	13	56	68	1	4	25	1.15
6203602--6203716	24	4.7	23	73	15	70	69	1	4	24	1.16
6203644--6203715	35	2.1	35	82	7	85	72	1	4	22	1.10
6204076--6204116	19	2.2	20	86	8	59	21	2	2	73	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6204269--6204330	30	2.1	29	82	8	72	30	3	4	61	1.33
6204577--6204651	23	3.0	25	79	16	68	34	0	2	62	1.09
6204896--6204960	28	2.4	27	80	14	64	46	3	0	50	1.17
6205285--6205317	16	2.0	17	88	5	50	42	6	9	42	1.61
6208283--6208318	18	2.1	18	89	5	56	66	2	2	27	1.19
6208427--6208495	17	4.1	17	74	9	52	62	2	2	31	1.25
6208525--6208578	22	2.3	23	84	15	67	74	3	5	16	1.16
6208672--6208725	20	2.7	20	85	2	63	38	3	3	53	1.36
6208679--6208725	20	2.3	20	88	0	76	40	2	4	53	1.32
6208800--6208825	10	2.6	10	100	0	52	7	0	0	92	0.39

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105