genome.fa.s135.2.7.7.80.10.50.1000.78.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  78  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13657968--13658298	119	2.8	120	80	5	323	41	16	13	29	1.86
13657961--13658304	79	4.3	80	78	5	304	41	15	14	28	1.87
13658376--13658430	22	2.5	21	80	8	65	30	7	25	36	1.83
13658278--13658690	189	2.2	187	86	3	553	36	13	15	34	1.87
13658896--13658944	18	2.7	18	90	0	71	4	12	2	81	0.91
13659127--13659192	26	2.5	26	77	0	78	30	19	15	34	1.93
13659183--13659221	15	2.6	15	79	0	51	38	15	25	20	1.92
13661835--13661873	19	2.2	17	86	9	51	12	10	7	69	1.37
13666916--13666966	17	3.2	17	73	15	56	27	5	0	66	1.14
13666956--13666999	22	2.0	22	95	0	79	52	4	4	38	1.42
13667307--13667346	20	2.0	20	85	9	55	17	2	0	80	0.83
13667588--13667646	11	5.5	11	78	15	52	74	6	0	18	1.03
13667583--13667654	26	2.9	26	83	6	87	75	6	1	16	1.10
13667589--13667645	5	10.8	5	80	10	53	73	7	0	19	1.05
13676743--13676779	16	2.2	17	86	13	51	72	0	0	27	0.84
13680644--13680702	11	5.2	12	74	13	63	50	13	0	35	1.42
13680652--13680716	33	2.0	33	87	0	94	49	12	0	38	1.41
13680644--13680711	23	3.1	22	77	12	68	51	13	0	35	1.41
13680707--13680736	11	2.7	11	94	0	51	56	6	0	36	1.26
13681877--13681911	12	2.8	12	91	4	52	20	0	0	80	0.72
13682379--13682428	6	8.2	6	84	4	64	28	0	6	66	1.15
13682357--13682424	12	5.5	12	77	5	64	26	1	10	61	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13682379--13682428	19	2.7	19	84	3	66	28	0	6	66	1.15
13687406--13687437	12	2.7	12	95	0	55	0	12	0	87	0.54
13696195--13696236	21	2.0	21	85	4	57	33	21	11	33	1.90
13698503--13698729	125	1.8	124	81	5	280	33	14	14	37	1.87
13698951--13699422	189	2.5	186	83	5	601	37	12	9	40	1.76
13699289--13699530	124	2.0	125	84	4	321	35	10	10	43	1.73
13700608--13700655	25	1.9	25	82	0	60	20	8	31	39	1.82
13703855--13703923	35	2.0	35	91	5	113	37	14	8	39	1.77
13705440--13705488	25	2.0	25	88	8	73	63	2	0	34	1.06
13707793--13707831	2	19.5	2	100	0	78	48	0	0	51	1.00
13711676--13711703	2	14.0	2	100	0	56	50	0	0	50	1.00
13712549--13712584	3	12.0	3	93	0	63	66	2	0	30	1.06
13712580--13712624	12	3.7	12	81	3	54	44	0	26	28	1.55
13716357--13716640	150	1.9	150	83	5	369	24	16	15	43	1.86
13725898--13725949	23	2.3	23	83	6	61	53	5	0	40	1.25
13734263--13734319	3	19.0	3	96	0	105	66	1	0	31	1.02
13738070--13738353	150	1.9	150	83	5	369	24	16	15	43	1.86
13747635--13747686	23	2.3	23	83	6	61	53	5	0	40	1.25
13748579--13748615	14	2.8	14	88	8	51	37	5	0	56	1.22
13754891--13754958	27	2.5	27	81	9	77	52	2	1	42	1.25
13755368--13755404	19	2.0	18	94	5	65	29	5	0	64	1.15
13757058--13757084	14	1.9	14	100	0	54	37	0	22	40	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13757227--13757430	64	3.3	62	69	14	168	42	12	12	32	1.79
13757165--13757430	124	2.1	126	82	4	335	41	11	13	33	1.80
13759076--13759142	21	3.0	24	77	18	81	64	0	0	35	0.94
13759070--13759127	27	2.1	28	81	9	66	63	0	1	34	1.04
13759099--13759140	11	3.5	12	80	9	50	64	0	0	35	0.94
13760748--13760814	25	2.7	25	95	0	116	47	29	4	17	1.67
13760748--13760815	13	5.4	13	78	19	81	47	29	5	17	1.71
13760611--13761012	207	1.9	207	94	0	714	46	21	7	25	1.76
13760964--13761119	12	12.3	12	71	15	91	47	26	5	20	1.72
13760955--13761083	25	5.2	24	81	7	150	47	25	5	21	1.72
13760955--13761089	50	2.7	50	90	1	225	47	25	5	20	1.73
13765183--13765256	38	1.9	38	86	0	103	32	2	20	44	1.65
13768886--13769187	160	1.9	161	82	3	385	34	7	15	42	1.75
13768921--13769229	161	1.9	160	81	5	374	34	8	14	42	1.76
13775702--13775743	3	14.7	3	80	9	52	33	2	2	61	1.21
13777182--13777229	21	2.3	21	80	16	64	52	2	0	45	1.12
13777209--13777246	16	2.2	17	81	13	51	50	0	0	50	1.00
13779470--13779502	3	11.7	3	87	12	52	30	0	0	69	0.88
13779829--13779872	13	3.6	13	75	25	51	29	0	2	68	1.02
13779829--13779870	16	2.6	16	85	7	59	28	0	2	69	1.01
13783657--13783681	2	12.5	2	100	0	50	48	0	0	52	1.00
13784853--13785161	161	1.9	160	80	7	358	34	8	14	42	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13791632--13791673	3	14.7	3	80	9	52	33	2	2	61	1.21
13793091--13793138	21	2.3	21	80	16	64	52	2	0	45	1.12
13793118--13793155	16	2.2	17	81	13	51	50	0	0	50	1.00
13795337--13795382	3	15.3	3	100	0	92	32	0	0	67	0.91
13795720--13795758	13	3.1	12	85	7	51	25	0	2	71	0.98
13796090--13796140	9	5.4	9	76	15	50	23	1	0	74	0.92
13796102--13796140	21	1.9	20	89	5	60	25	2	0	71	0.98
13796321--13796367	6	7.8	6	92	0	58	68	10	0	21	1.20
13796321--13796369	9	5.4	9	87	0	62	67	10	0	22	1.20
13796339--13796369	3	10.3	3	92	0	53	67	3	0	29	1.06
13796375--13796430	21	2.8	21	83	5	62	67	7	0	25	1.15
13796383--13796421	10	3.8	10	93	3	60	61	10	0	28	1.28
13796415--13796466	23	2.2	25	93	6	90	84	3	3	7	0.85
13796415--13796458	20	2.2	20	84	8	54	84	4	2	9	0.85
13796414--13796468	15	3.7	15	82	2	58	81	5	3	9	0.95
13797253--13797278	4	6.5	4	100	0	52	50	0	0	50	1.00
13797275--13797304	3	9.7	3	92	7	51	63	3	0	33	1.11
13797302--13797330	15	2.0	15	93	6	51	62	10	0	27	1.28
13797497--13797742	39	6.3	39	80	2	233	40	19	11	28	1.87
13797498--13797742	117	2.1	118	81	3	280	40	19	11	28	1.87
13797703--13797775	33	2.2	33	87	0	101	45	21	8	24	1.79
13797875--13798021	74	2.0	74	85	2	197	40	15	13	30	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13798275--13798329	26	2.1	26	89	0	83	3	16	7	72	1.21
13809863--13809901	20	1.9	21	84	5	53	20	0	5	74	1.01
13810220--13810272	10	5.3	10	78	17	56	22	3	0	73	0.99
13810219--13810272	21	2.6	22	86	11	71	24	3	0	72	1.01
13810454--13810500	9	5.2	9	86	0	58	65	19	0	14	1.26
13810528--13810583	18	2.9	18	74	23	51	73	3	0	23	0.99
13811449--13811480	3	10.7	3	100	0	64	65	0	0	34	0.93
13811548--13811573	4	6.5	4	100	0	52	50	0	0	50	1.00
13811584--13811612	15	2.0	15	93	6	51	62	10	0	27	1.28
13811913--13812094	86	2.1	85	82	5	215	39	3	14	41	1.64
13812016--13812065	27	1.9	25	84	15	66	38	0	10	52	1.35
13811949--13812157	85	2.4	85	82	7	244	38	2	16	42	1.61
13812489--13812546	25	2.3	26	82	8	66	41	1	13	43	1.55
13812516--13812639	61	2.0	61	84	1	160	41	2	16	39	1.61
13813877--13813970	47	2.0	47	91	0	152	27	6	17	48	1.71
13814905--13815088	63	2.9	61	76	11	201	47	8	5	38	1.59
13816626--13816662	15	2.5	14	91	8	56	43	0	0	56	0.99
13829151--13829206	17	3.4	16	80	14	60	69	0	16	14	1.19
13829997--13830045	13	3.5	13	86	8	62	30	22	10	36	1.87
13830485--13830532	22	2.2	21	88	3	69	35	2	16	45	1.59
13830593--13830650	23	2.5	24	82	2	73	29	10	24	36	1.88
13830585--13830770	69	2.7	68	82	8	191	32	6	18	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13830476--13830698	92	2.4	92	81	5	281	32	7	16	43	1.75
13830503--13830884	161	2.4	160	83	4	493	32	7	17	42	1.78
13830749--13830793	23	2.0	23	81	0	54	35	8	15	40	1.79
13830680--13831154	92	5.2	93	79	5	482	32	8	16	43	1.77
13830955--13831413	24	20.0	23	67	11	127	31	8	16	43	1.79
13830716--13831148	184	2.4	183	83	2	539	32	8	15	43	1.77
13831108--13831154	23	2.0	23	84	8	60	29	6	14	48	1.69
13831080--13831272	68	2.8	69	84	4	232	31	7	14	46	1.73
13830947--13831391	229	1.9	229	86	1	624	31	8	15	44	1.77
13831058--13831276	69	3.2	68	82	3	244	31	8	15	45	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105