genome.fa.s135.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  77  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13478062--13478112	19	2.7	18	82	11	57	78	3	15	1	0.99
13481874--13481913	20	2.0	20	85	5	53	32	17	10	40	1.83
13483739--13483773	16	2.2	16	100	0	70	65	0	0	34	0.93
13483759--13483793	18	1.9	18	88	0	52	57	0	0	42	0.99
13485775--13485852	16	4.8	16	75	15	63	21	1	2	74	1.01
13485815--13485868	9	5.5	10	85	14	53	29	0	7	62	1.22
13485872--13485958	4	20.5	4	71	17	52	29	0	3	66	1.08
13486070--13486098	3	10.0	3	92	7	51	34	0	0	65	0.93
13486373--13486402	12	2.5	12	94	0	51	10	3	20	66	1.35
13486434--13486470	19	1.9	19	88	0	56	29	10	21	37	1.88
13486946--13486982	13	3.0	12	88	7	56	18	0	2	78	0.87
13486946--13486984	17	2.4	16	83	8	60	17	0	2	79	0.84
13487016--13487096	22	3.9	22	76	18	66	14	7	1	76	1.06
13487010--13487101	36	2.5	36	84	8	107	15	8	1	75	1.10
13486996--13487096	5	19.6	5	71	20	75	16	6	0	75	1.07
13487112--13487450	59	5.7	60	85	4	463	45	8	12	33	1.72
13487110--13487450	118	2.9	119	90	3	510	45	8	12	33	1.73
13488739--13488773	16	2.2	16	89	0	52	65	17	8	8	1.44
13490263--13491232	238	4.1	238	80	7	962	47	11	8	32	1.70
13490349--13491219	475	1.8	475	82	6	1127	48	11	7	32	1.68
13493401--13493503	50	2.1	50	96	0	188	50	11	15	22	1.76
13494681--13494708	3	9.3	3	100	0	56	67	32	0	0	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13497872--13497920	23	2.1	23	84	3	62	67	0	2	30	1.02
13498897--13499300	189	2.2	186	78	7	424	51	6	6	34	1.56
13499066--13499229	76	2.2	73	83	5	204	53	8	6	32	1.56
13499528--13499576	24	2.0	26	88	8	75	59	0	0	40	0.98
13501837--13502651	159	5.1	159	80	5	701	40	20	5	33	1.76
13501830--13502663	318	2.6	317	80	6	861	40	20	5	33	1.76
13507339--13507460	45	2.6	45	75	10	113	48	13	12	25	1.78
13507528--13507674	43	3.5	42	81	5	145	45	19	10	24	1.82
13507573--13507671	42	2.3	41	81	10	119	45	15	13	26	1.82
13507840--13507890	22	2.3	22	80	10	59	37	13	13	35	1.85
13508082--13508135	21	2.5	22	84	3	74	37	18	9	35	1.83
13508909--13508980	35	2.1	35	100	0	144	41	11	27	19	1.85
13515348--13515506	57	2.7	60	79	6	175	33	15	6	44	1.73
13520421--13520462	20	2.0	21	95	4	77	54	19	0	26	1.44
13520738--13520797	31	1.9	31	93	0	102	48	23	1	26	1.60
13520757--13520839	20	4.0	20	74	13	78	45	22	1	30	1.60
13520778--13520812	11	3.2	11	87	0	52	42	28	0	28	1.56
13520746--13520825	42	1.9	42	89	0	124	45	26	1	27	1.62
13521517--13521925	207	2.0	207	96	0	755	38	9	8	43	1.67
13523788--13523826	19	2.1	19	85	0	51	74	0	17	7	1.05
13523794--13523826	17	1.9	17	88	11	50	75	0	18	6	1.00
13524537--13524585	25	1.9	26	91	4	82	46	2	10	40	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13527972--13528009	6	6.3	6	87	0	58	18	2	50	28	1.61
13528352--13528509	18	8.9	18	68	14	96	32	33	5	29	1.79
13528434--13528491	15	3.7	15	71	13	53	37	29	3	29	1.74
13528376--13528510	33	4.0	33	85	3	171	34	31	5	28	1.79
13528888--13528915	6	4.7	6	100	0	56	46	0	0	53	1.00
13529774--13529930	52	3.0	51	86	7	201	26	24	8	40	1.84
13540184--13540233	23	2.2	23	88	0	73	56	0	2	42	1.11
13541461--13541516	26	2.2	26	87	9	80	46	0	5	48	1.25
13541461--13541527	26	2.6	26	79	9	75	46	0	4	49	1.22
13541554--13541609	17	3.4	17	76	14	62	62	0	0	37	0.95
13541552--13541615	33	1.9	33	84	6	85	59	0	0	40	0.97
13541695--13541741	17	3.0	16	88	11	71	46	2	0	51	1.13
13541902--13541981	42	1.9	42	84	5	108	48	0	2	48	1.14
13541886--13541993	42	2.7	39	75	12	101	50	0	2	46	1.22
13541976--13542037	24	2.6	24	78	14	74	54	1	1	41	1.19
13545217--13545251	16	2.2	16	94	0	61	34	11	8	45	1.71
13549348--13549393	22	2.2	20	84	11	56	36	0	6	56	1.25
13549398--13549426	3	9.7	3	100	0	58	31	0	0	68	0.89
13549430--13549464	16	2.2	16	90	5	54	20	2	8	68	1.29
13550443--13550493	17	3.1	17	88	8	70	60	3	3	31	1.33
13550442--13550475	3	11.7	3	87	6	52	64	0	2	32	1.08
13550557--13550612	26	2.2	26	83	0	67	30	28	23	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13550564--13550633	26	2.7	26	84	0	95	31	24	21	22	1.98
13550815--13551359	119	4.6	117	78	5	400	45	15	19	18	1.85
13562424--13562469	22	2.1	21	84	11	58	36	0	8	54	1.32
13562472--13562527	3	18.7	3	100	0	112	32	0	0	67	0.91
13562532--13562567	15	2.4	15	90	9	56	19	2	11	66	1.35
13563532--13563562	3	10.7	3	93	6	55	70	0	0	29	0.87
13571780--13571819	21	1.9	21	90	10	64	55	20	0	25	1.44
13572272--13572716	159	2.8	159	83	3	576	39	20	5	34	1.76
13572308--13572877	159	3.6	157	79	4	470	40	21	5	33	1.76
13575336--13575395	27	2.2	27	88	5	86	46	11	26	15	1.79
13577949--13578141	22	8.8	21	77	6	82	39	5	7	46	1.56
13577986--13578141	22	7.1	22	79	9	131	42	5	6	46	1.51
13577995--13578119	65	1.9	65	83	3	162	42	5	7	44	1.55
13578321--13578388	22	3.1	21	75	8	64	39	11	2	45	1.56
13578667--13578815	22	6.8	21	80	1	127	39	5	7	47	1.54
13578667--13578957	44	6.5	44	73	12	142	39	7	5	47	1.54
13578666--13578794	66	2.0	66	87	3	188	38	4	6	49	1.51
13578799--13578954	22	7.1	22	74	2	127	41	9	2	46	1.50
13578859--13578987	66	2.0	66	81	3	152	37	11	3	46	1.59
13578903--13579045	22	6.5	22	75	4	101	35	11	6	46	1.66
13579101--13579419	22	14.5	22	69	12	156	32	9	6	51	1.60
13579455--13579492	11	3.5	11	85	0	58	39	5	0	55	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13579437--13579491	22	2.5	22	88	5	76	41	5	1	50	1.36
13579800--13579862	11	5.9	11	74	7	58	34	1	4	58	1.29
13579984--13580156	22	7.9	22	73	11	97	39	9	2	47	1.51
13580006--13580053	11	4.4	11	83	0	60	37	2	0	60	1.09
13579927--13580140	66	3.3	66	77	4	164	36	10	3	48	1.56
13582758--13582803	17	2.7	17	89	0	74	23	23	8	43	1.82
13582805--13582851	21	2.2	21	77	7	51	53	17	2	27	1.55
13591305--13591616	153	2.0	153	88	1	455	45	4	7	43	1.50
13606667--13606723	23	2.5	22	88	8	80	10	1	8	78	1.02
13606667--13606723	24	2.4	24	94	2	98	10	1	8	78	1.02
13616393--13616435	18	2.3	18	84	11	52	39	0	2	58	1.11
13627043--13627074	14	2.3	15	89	10	50	68	6	12	12	1.37
13631378--13631423	24	1.9	24	86	8	67	43	0	0	56	0.99
13631442--13631475	17	1.9	18	88	5	52	23	2	0	73	0.97
13633953--13633998	23	1.9	25	86	8	69	52	0	0	47	1.00
13635127--13635151	5	5.0	5	100	0	50	60	0	20	20	1.37
13636031--13636107	31	2.6	29	75	16	77	59	3	3	32	1.34
13637201--13637251	27	1.9	26	84	4	66	52	5	0	41	1.25
13637649--13637708	24	2.5	23	84	7	75	50	1	6	41	1.39
13642224--13642261	19	2.0	19	100	0	76	5	5	5	84	0.88
13646472--13646730	127	2.0	127	88	1	385	55	11	10	22	1.65
13648465--13648506	14	3.0	14	96	0	75	47	14	9	28	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13649274--13649408	67	2.0	67	94	0	234	28	20	11	40	1.86
13652304--13652342	19	2.1	19	90	0	60	41	15	12	30	1.85
13655926--13656047	50	2.4	51	74	6	113	40	11	8	40	1.71
13656256--13656294	16	2.5	15	88	8	60	33	0	0	66	0.92
13656600--13656660	3	20.7	3	96	3	115	32	0	0	67	0.91
13656669--13656715	18	2.7	18	86	3	60	19	4	8	68	1.33
13656753--13656829	26	3.0	25	75	16	77	71	7	0	20	1.10
13656766--13656831	12	5.3	12	76	16	55	71	7	0	21	1.11
13656799--13656836	20	1.9	20	84	10	51	76	2	2	18	1.02
13658010--13658304	40	7.4	39	81	3	220	41	16	13	28	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105