genome.fa.s135.2.7.7.80.10.50.1000.85.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  85  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14918667--14918750	33	2.6	31	84	5	114	29	9	15	45	1.78
14918936--14919190	32	7.8	32	73	10	151	32	18	15	32	1.92
14919038--14919161	65	1.9	66	81	5	153	30	17	15	36	1.91
14919216--14919301	28	2.8	32	68	13	81	27	15	20	36	1.93
14919819--14919856	18	2.1	18	85	9	51	15	2	0	81	0.80
14920461--14920644	94	1.9	95	96	1	343	41	10	14	33	1.81
14926353--14926401	25	2.0	25	84	8	64	30	2	16	51	1.56
14930156--14930208	3	17.7	3	100	0	106	33	0	0	66	0.92
14930320--14930384	3	21.7	3	100	0	130	32	0	0	67	0.91
14932194--14932245	27	2.0	27	85	11	72	19	1	5	73	1.14
14934651--14934689	12	3.2	13	82	10	55	17	0	12	69	1.19
14935318--14935404	20	4.6	20	68	18	69	27	5	12	54	1.61
14935293--14935437	55	2.7	55	87	4	188	26	6	13	53	1.64
14935345--14935404	23	2.8	22	85	12	81	26	5	11	56	1.55
14935517--14935578	24	2.6	23	82	7	79	35	3	8	53	1.47
14935722--14935774	18	3.0	18	73	15	56	32	7	11	49	1.67
14936351--14936395	20	2.3	20	96	3	83	20	15	13	51	1.76
14937948--14938381	41	10.6	41	69	11	192	26	14	17	41	1.88
14938406--14938483	37	2.1	37	85	0	102	32	12	17	37	1.88
14938875--14938922	3	15.7	3	86	4	69	31	0	4	64	1.12
14938874--14938922	25	2.0	25	91	0	80	30	0	4	65	1.11
14938882--14938919	19	2.0	19	94	0	67	31	0	2	65	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14938882--14938923	22	1.9	22	95	0	75	30	0	2	66	1.04
14939427--14939505	27	2.9	27	86	3	95	16	2	29	51	1.57
14940112--14940238	25	5.3	23	73	15	87	23	5	11	59	1.53
14940174--14940226	12	4.3	12	76	9	54	26	1	11	60	1.41
14940208--14940269	30	2.0	33	87	9	94	27	6	16	50	1.69
14950407--14950440	12	2.8	12	90	0	50	44	32	2	20	1.67
14950410--14950631	80	2.8	82	81	4	272	43	25	5	24	1.76
14950508--14950743	119	2.0	120	94	0	420	39	25	6	27	1.81
14950629--14950778	79	1.9	79	82	10	191	44	22	8	25	1.80
14950529--14950767	119	2.0	119	87	0	343	43	23	6	26	1.78
14959498--14959545	21	2.3	20	82	6	69	45	6	25	22	1.75
14960155--14960448	134	2.2	133	78	6	290	39	18	12	29	1.87
14963763--14963795	2	16.5	2	93	0	57	48	0	48	3	1.17
14965816--14965858	13	3.2	13	83	3	50	2	18	2	76	1.00
14976997--14977180	42	4.3	42	82	3	217	31	11	13	42	1.81
14976997--14977179	85	2.2	85	87	4	253	31	12	13	43	1.81
14976997--14977226	85	2.7	84	82	8	207	31	11	13	43	1.79
14977357--14977550	43	4.3	43	72	13	122	33	12	12	41	1.80
14978136--14978182	21	2.2	21	88	0	67	14	29	8	46	1.74
14978861--14978905	24	2.0	23	86	8	65	48	0	4	46	1.22
14978870--14978929	30	2.1	29	84	9	79	41	0	10	48	1.37
14980164--14980253	14	6.2	14	70	11	56	16	2	31	50	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14980238--14980295	20	2.8	21	82	10	66	17	3	31	48	1.64
14980808--14980844	14	2.5	15	83	16	51	75	2	0	21	0.92
14981742--14981772	16	1.9	16	93	0	53	3	16	38	41	1.64
14982303--14982794	135	3.6	133	83	5	549	46	14	18	20	1.83
14982303--14982779	68	7.0	69	66	10	212	46	14	18	20	1.84
14982846--14983063	105	2.1	102	79	9	223	47	11	21	20	1.81
14982890--14983111	104	2.1	104	81	4	261	45	10	22	22	1.82
14983049--14983195	35	4.2	35	74	10	120	51	11	16	20	1.75
14983139--14983690	216	2.5	219	82	5	656	46	14	18	20	1.83
14983115--14983707	110	5.5	109	79	6	533	47	13	18	20	1.83
14983347--14983515	36	4.6	37	71	10	114	47	13	18	20	1.81
14996156--14996213	15	3.8	15	84	4	53	29	1	22	46	1.62
14996175--14996213	15	2.6	15	91	0	60	25	2	20	51	1.60
14996232--14996294	15	4.3	15	74	13	60	20	0	30	49	1.49
14996284--14996349	20	3.1	21	83	14	75	16	3	33	46	1.62
14996900--14996931	8	3.9	8	95	4	55	75	3	0	21	0.95
14997956--14997981	9	2.9	9	100	0	52	34	0	7	57	1.27
15005000--15005028	2	14.5	2	100	0	58	48	0	0	51	1.00
15006570--15006634	33	2.0	33	96	0	121	36	26	12	24	1.91
15007643--15007712	36	1.9	36	97	0	131	28	11	12	47	1.77
15008998--15009046	24	2.0	25	84	8	64	46	0	6	46	1.27
15012629--15012662	15	2.2	16	94	5	61	52	0	11	35	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15012974--15013036	26	2.5	25	84	5	81	55	25	4	14	1.58
15012974--15013037	25	2.5	26	82	5	78	54	25	4	15	1.60
15013125--15013169	17	2.6	17	82	6	56	48	31	0	20	1.49
15014417--15014469	27	2.0	26	85	10	72	22	0	5	71	1.06
15017128--15017169	21	2.0	22	85	4	59	33	4	14	47	1.65
15019617--15019711	5	18.8	5	71	14	61	25	2	3	69	1.14
15019628--15019735	15	7.1	15	67	17	55	25	0	4	68	1.15
15019880--15020104	90	2.5	90	80	10	224	43	11	10	34	1.75
15019873--15020151	94	3.0	94	74	13	270	44	10	10	35	1.72
15023255--15023294	18	2.3	18	80	20	50	32	2	5	60	1.32
15023604--15023671	12	5.5	12	74	17	59	4	16	0	79	0.89
15029097--15029151	20	2.7	21	83	10	62	0	29	0	70	0.87
15029104--15029152	20	2.5	21	87	12	77	0	26	0	73	0.83
15029616--15029656	17	2.4	17	83	0	55	21	4	4	68	1.28
15030826--15030868	21	2.0	21	81	0	50	39	0	2	58	1.11
15032124--15032198	17	4.4	16	76	20	57	16	4	0	80	0.87
15032124--15032198	21	3.6	21	75	18	68	16	4	0	80	0.87
15032157--15032198	19	2.2	19	86	4	57	19	2	0	78	0.86
15032142--15032198	20	2.9	20	79	10	64	19	1	0	78	0.83
15033092--15033137	15	2.9	15	87	6	65	69	0	2	28	1.00
15033325--15033374	20	2.4	21	78	15	59	24	0	2	74	0.93
15037492--15037600	27	3.9	27	78	12	87	33	30	10	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15037527--15037634	30	3.7	30	82	7	150	33	28	10	27	1.89
15037507--15037634	57	2.2	57	94	2	222	32	30	9	28	1.88
15037507--15037634	27	4.5	30	81	12	146	32	30	9	28	1.88
15040771--15040851	21	3.9	20	76	10	74	43	9	6	40	1.63
15040828--15040871	21	2.2	20	83	4	52	43	11	11	34	1.77
15041051--15041216	21	8.0	21	75	4	104	48	7	9	34	1.64
15041207--15041270	27	2.4	27	84	5	76	48	10	7	32	1.67
15041264--15041313	20	2.5	20	76	0	55	50	12	0	38	1.40
15041264--15041330	9	6.8	10	71	19	52	49	11	1	37	1.49
15042931--15042971	21	2.0	21	85	0	55	51	14	4	29	1.63
15047814--15047876	30	2.1	30	93	0	108	46	11	17	25	1.81
15052873--15052942	19	3.7	19	71	16	65	65	0	0	34	0.93
15056613--15056857	121	2.0	122	87	3	350	33	13	16	36	1.88
15060192--15060232	20	2.0	20	100	0	82	24	12	24	39	1.89
15062591--15062629	20	2.0	20	94	0	69	12	0	7	79	0.93
15063161--15063193	6	5.7	6	85	7	50	30	0	0	69	0.88
15063160--15063193	18	1.9	17	94	5	59	29	0	0	70	0.87
15063312--15063421	43	2.7	41	70	19	97	50	0	0	49	1.00
15063320--15063390	22	3.2	23	75	18	71	50	0	0	49	1.00
15065005--15065040	2	18.0	2	100	0	72	50	0	50	0	1.00
15075106--15075157	26	2.0	26	92	0	86	23	15	19	42	1.89
15091139--15091415	10	28.2	10	67	13	60	55	5	2	36	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15091234--15091308	19	4.1	18	73	8	62	65	0	0	34	0.93
15091236--15091298	28	2.2	28	80	5	74	66	0	0	33	0.92
15091224--15091308	38	2.2	37	80	13	102	64	0	0	35	0.94
15091303--15091354	19	2.7	19	85	8	70	44	9	1	44	1.48
15091445--15091529	10	8.4	10	79	11	75	43	2	3	50	1.32
15093034--15093065	2	16.0	2	100	0	64	50	0	0	50	1.00
15094491--15094540	15	3.3	15	76	18	50	18	4	2	76	1.04
15094495--15094541	11	4.0	12	81	10	53	19	2	2	76	0.99
15094495--15094536	6	7.0	6	78	10	50	16	2	2	78	0.96
15094991--15095058	16	3.8	16	74	25	64	67	0	1	30	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105