genome.fa.s135.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  50  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9616369--9616481	44	2.6	44	81	2	129	29	17	15	37	1.91
9616420--9616533	44	2.6	44	79	8	115	29	20	14	35	1.93
9618132--9618170	21	1.9	20	89	5	60	20	23	2	53	1.57
9619491--9619550	20	3.2	19	68	18	54	36	5	6	51	1.50
9620280--9620351	24	3.0	24	83	6	101	62	4	1	31	1.23
9620316--9620354	17	2.3	17	86	0	51	64	2	0	33	1.08
9620939--9620981	18	2.2	20	80	20	63	51	25	0	23	1.49
9620944--9620982	18	2.2	18	100	0	78	56	25	0	17	1.41
9625388--9625431	22	2.0	22	95	0	79	43	13	11	31	1.80
9625394--9625444	22	2.4	21	83	6	59	45	11	11	31	1.77
9639426--9639479	21	2.5	22	76	8	58	20	9	12	57	1.63
9639403--9639472	21	3.3	21	73	13	63	24	8	11	55	1.63
9640765--9640807	22	2.0	22	85	0	59	39	6	9	44	1.64
9644026--9644107	25	3.4	25	91	3	123	40	14	19	25	1.90
9650267--9650329	26	2.4	27	83	2	74	28	1	30	39	1.66
9652174--9652224	25	2.0	25	88	0	75	35	7	19	37	1.81
9657060--9657102	22	2.0	22	95	0	77	44	4	9	41	1.57
9660088--9660140	17	3.2	17	86	2	72	30	5	5	58	1.44
9665814--9667310	158	9.4	158	72	7	931	39	11	17	31	1.85
9665814--9667310	317	4.7	317	79	5	1428	39	11	17	31	1.85
9665814--9667293	640	2.3	637	81	6	1688	39	11	17	31	1.85
9667450--9669831	159	15.0	158	71	12	993	32	16	12	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9667700--9668294	306	2.0	303	82	5	725	30	17	11	40	1.85
9668056--9668982	492	1.9	491	78	4	1019	34	15	11	38	1.84
9668548--9669458	157	5.7	159	71	8	415	33	17	11	38	1.85
9668570--9669508	320	3.0	313	78	6	833	32	16	12	38	1.85
9669889--9672397	159	15.8	159	72	5	1489	30	16	12	40	1.86
9670951--9671635	320	2.1	320	81	3	783	30	17	12	39	1.86
9672409--9676094	159	23.2	159	72	9	1990	31	16	12	39	1.86
9672408--9676094	317	11.6	317	73	8	2225	31	16	12	39	1.86
9672452--9674001	791	2.0	787	79	7	1694	31	16	12	39	1.86
9675771--9676037	145	1.8	144	81	4	331	32	19	9	37	1.85
9676006--9676183	89	2.0	89	93	0	302	34	17	12	34	1.88
9676444--9676566	61	2.0	61	98	0	237	25	16	10	47	1.78
9676690--9677308	163	3.9	163	74	10	446	29	17	14	39	1.88
9676872--9677149	146	1.9	146	84	2	371	28	16	14	41	1.87
9676709--9677317	303	2.0	305	80	5	694	29	16	13	39	1.88
9678794--9683329	159	28.5	159	74	6	2769	31	16	11	39	1.85
9678807--9683329	317	14.2	315	75	8	2814	31	16	11	39	1.85
9687737--9688993	320	3.9	317	77	5	1025	31	10	16	41	1.82
9687737--9689080	161	8.4	159	77	5	945	31	10	16	41	1.83
9687801--9688968	480	2.4	478	79	3	1123	31	10	16	41	1.82
9688953--9689188	132	1.8	130	82	3	303	31	10	17	40	1.83
9692795--9692959	10	17.4	9	69	14	75	55	3	1	39	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9692794--9692974	19	9.7	18	68	10	69	55	3	2	38	1.28
9692839--9692906	21	3.4	20	76	13	68	55	4	1	38	1.29
9692894--9692959	27	2.4	27	80	9	73	59	0	3	37	1.13
9693227--9693271	23	2.0	23	81	0	54	73	2	0	24	0.95
9693257--9693295	10	3.9	10	79	0	51	64	12	2	20	1.40
9693549--9693689	10	14.0	10	68	9	72	36	3	5	54	1.41
9693553--9693605	20	2.7	20	91	2	81	33	1	1	62	1.17
9693627--9693689	30	2.1	30	88	2	92	36	4	6	52	1.48
9693647--9693686	21	2.0	21	90	5	64	37	5	7	50	1.53
9696734--9697014	151	1.9	151	90	1	447	34	8	18	38	1.80
9698303--9698348	21	2.3	21	85	7	60	39	2	17	41	1.62
9700953--9701123	44	3.8	43	79	6	153	27	8	16	47	1.76
9701306--9701353	25	2.0	24	87	4	69	33	10	10	45	1.72
9701335--9701375	21	1.9	22	90	5	66	34	7	12	46	1.69
9701196--9701376	46	4.1	44	71	12	136	38	8	9	44	1.67
9701540--9701597	21	2.7	21	70	5	53	37	5	13	43	1.67
9701444--9701675	45	5.2	43	73	13	157	34	8	14	43	1.75
9701699--9701811	36	3.1	36	83	0	136	32	12	14	40	1.83
9701852--9701908	20	2.8	20	89	0	87	17	10	17	54	1.70
9702027--9702078	18	2.8	19	75	13	54	25	7	17	50	1.72
9702000--9702081	37	2.2	37	88	0	137	24	7	18	50	1.72
9702085--9702150	20	3.2	20	81	12	71	30	6	13	50	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9707145--9707182	14	2.7	15	84	12	53	28	2	0	68	1.03
9707502--9707547	24	1.9	24	86	8	67	36	10	0	52	1.37
9707643--9707680	19	2.1	18	95	5	67	63	5	10	21	1.46
9708327--9708369	22	2.0	22	100	0	86	13	30	23	32	1.93
9713749--9713801	12	4.7	12	84	13	76	7	0	20	71	1.10
9713741--9713816	9	8.4	9	80	0	53	15	0	14	69	1.19
9714809--9714849	21	2.0	21	85	0	55	4	9	2	82	0.89
9717550--9718283	161	4.6	158	75	8	522	32	10	15	41	1.81
9724527--9724557	8	3.9	8	91	0	53	22	0	12	64	1.27
9725219--9726195	372	2.6	372	91	0	1546	19	31	23	25	1.98
9727172--9727223	17	3.0	18	80	8	63	17	0	38	44	1.49
9727212--9727385	7	26.7	7	71	14	61	19	1	32	46	1.58
9727213--9727308	19	5.0	19	79	5	95	15	1	33	50	1.52
9727213--9727385	13	13.3	13	68	16	56	19	1	32	46	1.58
9727252--9727332	32	2.5	33	82	11	98	17	0	30	51	1.45
9727252--9727385	7	20.6	7	70	14	81	20	0	31	47	1.56
9727905--9727939	17	2.1	17	88	0	52	22	0	0	77	0.78
9728074--9728132	27	2.2	26	80	17	68	44	5	5	45	1.47
9728266--9728317	23	2.3	21	81	12	59	75	0	1	23	0.91
9728285--9728314	15	1.9	16	93	6	53	80	0	0	20	0.72
9728284--9728326	22	2.0	22	86	9	61	76	0	4	18	0.95
9729152--9729268	3	40.3	3	75	10	91	58	5	3	32	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9729153--9729276	40	3.2	39	77	12	101	57	6	3	33	1.40
9729490--9730654	120	9.8	120	78	3	834	44	15	22	17	1.87
9729494--9730654	236	4.9	236	78	4	912	44	15	22	17	1.87
9729617--9730654	474	2.2	474	80	4	1137	44	15	22	17	1.87
9731380--9731428	18	2.6	20	78	15	59	0	18	4	77	0.92
9731403--9731484	13	6.5	13	72	12	64	0	17	3	79	0.88
9731383--9731458	8	9.5	8	75	12	59	0	17	3	78	0.89
9731778--9731813	18	2.1	17	89	5	54	2	8	0	88	0.59
9735467--9735516	24	2.1	24	88	3	75	76	6	0	18	0.99
9736341--9736468	3	43.3	3	74	9	102	58	6	3	32	1.38
9736409--9736479	18	3.7	20	74	18	60	57	5	1	35	1.31
9736934--9736967	9	3.7	9	84	7	50	70	0	0	29	0.87
9736917--9736968	19	2.8	19	80	11	63	71	0	0	28	0.87
9738855--9738887	3	11.3	3	93	6	59	69	0	0	30	0.88
9739097--9739182	38	2.3	38	83	4	102	41	22	16	19	1.90
9739396--9739434	18	2.2	18	90	4	62	66	0	7	25	1.18
9741204--9741240	13	2.7	14	87	8	58	83	0	8	8	0.80
9741206--9741241	16	2.4	16	90	9	58	86	0	8	5	0.72
9742653--9742695	4	10.8	4	84	0	59	20	25	0	53	1.46
9745078--9745112	17	2.1	17	100	0	70	82	0	17	0	0.66
9745587--9745654	10	6.3	10	73	15	55	77	0	16	5	0.95
9745614--9745657	23	2.0	22	86	4	61	75	0	18	6	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9746538--9746597	28	2.1	28	84	0	75	33	13	13	40	1.83
9746693--9746734	22	1.9	22	90	0	66	35	16	16	30	1.92
9747000--9747479	33	14.6	32	73	8	245	34	19	17	28	1.94
9747223--9747464	65	3.7	65	73	7	188	37	18	16	27	1.92
9747485--9747541	22	2.5	22	82	2	60	35	21	22	21	1.96
9747653--9747683	12	2.5	12	94	5	53	83	6	0	9	0.79
9747650--9747717	18	4.1	16	74	12	57	82	5	4	7	0.95
9747670--9747720	25	2.0	26	88	7	79	80	5	3	9	1.01
9750166--9750192	14	1.9	14	100	0	54	48	22	7	22	1.75
9750220--9750270	19	2.7	19	84	6	59	50	23	7	17	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105