genome.fa.s135.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  103  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18751145--18751204	28	2.1	28	82	11	70	48	1	0	50	1.11
18751559--18751620	24	2.5	25	79	12	65	59	1	1	37	1.17
18751742--18751918	92	1.9	92	93	2	302	29	14	25	29	1.95
18752190--18752249	27	2.2	27	82	8	68	56	5	0	38	1.21
18753799--18753843	21	2.1	22	84	12	58	13	8	6	71	1.31
18754552--18754578	12	2.2	12	100	0	54	14	0	0	85	0.61
18756283--18756340	16	3.6	16	77	9	55	18	0	27	53	1.45
18756271--18756349	32	2.5	32	87	0	113	21	1	26	50	1.56
18757610--18757665	24	2.3	24	78	6	60	37	7	33	21	1.81
18758193--18758393	109	1.8	109	83	2	269	40	17	18	23	1.91
18758356--18758416	23	2.7	22	89	2	86	31	19	24	24	1.98
18758570--18758636	22	3.0	23	80	4	82	32	20	20	25	1.97
18758266--18758834	220	2.6	220	86	1	775	37	18	20	23	1.94
18758626--18758811	88	2.1	88	83	3	223	38	16	19	25	1.92
18758702--18759171	111	4.3	110	84	2	557	37	18	20	24	1.94
18758702--18759171	221	2.1	221	84	3	588	37	18	20	24	1.94
18759127--18759199	22	3.4	22	77	11	78	31	17	24	26	1.97
18759130--18759214	43	2.0	43	88	0	125	34	15	22	28	1.94
18759951--18760009	28	2.1	28	84	3	75	23	0	8	67	1.17
18761254--18761279	9	2.9	9	100	0	52	11	0	0	88	0.52
18766268--18766334	32	2.1	32	88	2	100	17	1	31	49	1.56
18766269--18766328	16	3.8	16	82	8	77	18	1	30	50	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18766696--18766766	37	1.9	36	81	13	83	71	1	1	25	1.02
18767540--18767622	22	3.6	24	75	14	68	28	10	38	21	1.87
18767778--18767812	12	2.9	12	91	0	61	8	17	57	17	1.64
18767778--18767836	24	2.5	24	81	8	59	8	13	54	23	1.66
18767889--18767939	3	17.0	3	76	8	50	35	0	3	60	1.15
18768636--18768675	21	1.9	21	84	0	53	20	0	5	75	0.99
18768634--18768681	21	2.3	21	74	0	51	27	0	4	68	1.07
18769076--18769127	16	3.2	16	78	5	59	50	26	1	21	1.59
18769137--18769231	30	3.2	28	72	10	75	47	28	1	23	1.58
18769151--18769259	30	3.7	30	76	12	100	48	26	0	23	1.57
18769355--18769385	16	2.0	16	93	6	55	48	0	6	45	1.28
18772520--18772688	86	2.0	87	96	1	313	40	7	7	43	1.62
18773592--18773618	12	2.2	12	100	0	54	14	0	0	85	0.61
18775021--18775100	17	4.7	17	80	8	83	33	17	22	26	1.96
18776949--18777118	84	2.0	83	94	1	295	46	5	10	37	1.62
18778648--18778764	48	2.5	47	76	13	114	33	0	2	63	1.14
18778741--18778802	27	2.3	26	78	8	70	41	4	0	53	1.22
18778714--18778799	36	2.4	37	84	5	106	41	4	0	53	1.21
18779306--18779340	7	4.9	7	86	6	52	14	2	0	82	0.77
18779306--18779340	15	2.4	14	90	4	52	14	2	0	82	0.77
18802851--18802875	2	12.5	2	100	0	50	52	0	0	48	1.00
18811612--18811645	6	5.8	6	89	6	52	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18811612--18811645	11	2.9	12	86	8	52	47	0	0	52	1.00
18811601--18811649	17	2.8	18	78	6	55	46	0	0	53	1.00
18811819--18811867	18	2.6	19	78	15	57	61	0	2	36	1.08
18813755--18813784	2	15.0	2	100	0	60	50	0	0	50	1.00
18832954--18832987	16	2.0	18	88	11	54	52	0	0	47	1.00
18833832--18833980	74	2.0	74	97	0	280	40	10	22	26	1.87
18849826--18849851	2	13.0	2	100	0	52	50	50	0	0	1.00
18856824--18856903	41	1.9	42	82	2	99	45	6	1	47	1.36
18857456--18857509	23	2.5	22	85	8	74	37	14	3	44	1.63
18857706--18857753	16	2.9	17	85	11	57	52	0	4	43	1.20
18857720--18857758	16	2.4	17	86	4	53	51	0	5	43	1.24
18857786--18857815	15	2.0	15	93	0	51	56	0	0	43	0.99
18857791--18857823	8	4.2	8	84	7	50	54	0	0	45	0.99
18862249--18862488	118	2.0	118	96	0	444	35	17	21	25	1.95
18873171--18873223	21	2.5	21	87	0	70	43	15	13	28	1.84
18875321--18875373	6	9.0	6	89	10	83	49	0	0	50	1.00
18876582--18876614	5	6.6	5	96	0	57	42	54	0	3	1.15
18877416--18877461	23	2.0	23	100	0	92	65	17	8	8	1.45
18877834--18877859	11	2.4	11	100	0	52	61	0	0	38	0.96
18879262--18879336	35	2.2	34	79	11	82	52	2	0	45	1.15
18879293--18879359	17	4.0	17	72	16	59	49	0	0	50	1.00
18879264--18879349	37	2.4	36	78	11	95	50	2	0	47	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18880053--18880090	19	2.0	19	89	0	58	47	0	0	52	1.00
18885311--18885449	72	2.0	69	88	7	208	37	9	17	35	1.83
18897446--18897471	12	2.2	12	100	0	52	61	0	0	38	0.96
18897933--18897975	16	2.5	18	81	7	54	44	0	0	55	0.99
18897964--18898014	20	2.7	17	78	21	57	52	0	0	47	1.00
18897965--18898016	18	2.8	18	88	11	70	53	0	0	46	1.00
18898072--18898132	26	2.3	26	82	2	68	60	3	0	36	1.13
18915579--18915604	8	3.2	8	100	0	52	26	15	23	34	1.94
18916521--18916567	9	5.0	9	80	19	51	68	0	0	31	0.90
18917698--18917763	12	5.5	11	74	15	51	42	1	3	53	1.25
18917748--18917836	43	2.0	44	81	14	105	48	1	1	49	1.16
18917895--18917919	8	3.1	8	100	0	50	52	0	0	48	1.00
18918820--18918892	32	2.3	32	90	0	110	47	1	0	50	1.09
18925617--18925688	24	3.0	22	76	10	63	18	5	1	75	1.07
18925682--18925706	3	8.3	3	100	0	50	32	0	0	68	0.90
18925731--18925760	3	10.0	3	100	0	60	33	0	0	66	0.92
18925682--18925802	54	2.2	54	98	0	233	38	4	2	53	1.36
18934639--18934664	6	4.3	6	100	0	52	84	0	0	15	0.62
18934695--18934737	16	2.5	17	77	11	52	48	4	0	46	1.22
18934786--18934996	58	3.6	58	84	10	252	49	4	11	34	1.60
18934692--18934996	58	5.1	57	76	13	249	49	5	9	36	1.57
18940075--18940133	21	2.8	21	89	0	91	37	8	11	42	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18940346--18940471	34	3.7	33	69	6	99	30	13	9	46	1.75
18940455--18940541	17	5.2	17	72	5	70	29	18	11	40	1.86
18940463--18940611	34	4.4	34	78	4	133	33	14	9	42	1.78
18940512--18940611	17	5.9	17	73	0	74	37	13	8	42	1.73
18940689--18940775	34	2.6	34	84	0	102	37	17	9	35	1.81
18940687--18940821	17	7.9	17	71	3	83	35	16	10	37	1.83
18940636--18940821	51	3.6	51	69	5	133	36	15	10	38	1.81
18942370--18942625	60	4.3	61	79	8	242	47	6	8	37	1.59
18942392--18942623	58	3.9	59	81	9	242	48	6	7	37	1.58
18957380--18957441	12	5.5	11	76	14	56	41	1	1	54	1.19
18957386--18957438	12	4.7	12	75	11	58	45	1	1	50	1.23
18957474--18957521	23	2.2	23	85	7	64	33	20	0	45	1.52
18961606--18961660	28	2.0	28	96	3	103	43	32	0	23	1.54
18964149--18964573	212	2.0	212	92	0	706	45	16	16	21	1.85
18966299--18966374	28	2.7	28	82	10	100	56	0	0	43	0.99
18966307--18966362	17	3.6	17	68	28	52	53	0	0	46	1.00
18966282--18966386	29	3.3	35	79	17	113	53	0	0	46	1.00
18967709--18967741	15	2.1	16	94	5	59	72	0	6	21	1.05
18974098--18974157	14	3.9	14	75	23	57	45	8	23	23	1.80
18977141--18977194	28	1.9	28	100	0	108	22	18	18	40	1.91
18979083--18979127	19	2.4	18	82	10	54	62	0	0	37	0.96
18986631--18986703	31	2.3	32	83	9	96	39	4	0	56	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18986692--18986754	29	2.2	29	83	16	87	44	0	0	55	0.99
18986732--18986786	22	2.5	22	80	13	62	56	0	0	43	0.99
18986855--18986879	2	12.5	2	100	0	50	48	0	0	52	1.00
18987164--18987222	31	2.0	31	83	12	79	44	0	3	52	1.17
18993547--18993634	45	2.0	45	86	4	124	28	15	5	50	1.67
19013083--19013140	21	2.7	22	86	10	68	53	0	0	46	1.00
19013090--19013140	21	2.4	21	90	6	77	50	0	0	49	1.00
19014805--19014833	2	14.5	2	100	0	58	48	0	0	51	1.00
19014863--19014893	15	2.1	15	94	5	55	45	0	0	54	0.99
19017017--19017051	12	2.8	12	91	4	52	40	5	2	51	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105