genome.fa.s135.2.7.7.80.10.50.1000.82.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  82  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14423032--14423100	7	9.7	7	77	17	63	14	7	1	76	1.06
14423026--14423074	22	2.2	22	92	0	80	14	6	0	79	0.91
14423047--14423102	21	2.8	19	84	12	76	14	5	1	78	1.00
14427371--14427417	19	2.4	19	89	3	67	48	12	4	34	1.61
14427389--14427455	31	2.2	31	84	7	84	55	10	2	31	1.49
14427444--14427519	24	3.2	23	80	12	100	51	10	3	34	1.55
14427493--14427550	28	2.1	26	81	18	64	51	13	5	29	1.63
14427533--14427568	17	2.1	18	89	5	56	50	11	5	33	1.61
14432419--14432461	21	2.0	21	90	0	68	32	2	39	25	1.69
14432422--14432467	21	2.2	21	84	3	58	30	2	39	28	1.69
14436430--14436476	7	6.6	7	78	11	51	78	0	2	19	0.85
14436430--14436474	15	3.2	14	82	17	58	80	0	2	17	0.82
14436429--14436470	21	2.0	21	90	0	66	76	0	2	21	0.90
14437918--14437947	10	3.1	10	95	4	53	36	0	0	63	0.95
14460686--14460712	14	1.9	14	100	0	54	29	29	18	22	1.97
14460774--14460813	21	1.9	21	89	0	62	80	0	10	10	0.92
14460876--14461148	58	4.7	58	80	8	295	36	10	6	45	1.65
14461171--14461223	6	9.0	6	93	2	90	81	0	1	16	0.79
14461256--14461295	3	13.0	3	94	5	71	67	0	0	32	0.91
14461959--14462091	3	39.7	3	71	19	54	60	1	3	33	1.23
14461959--14462090	48	2.8	46	80	15	146	60	1	3	34	1.24
14462291--14462628	41	8.0	41	77	9	238	44	19	13	22	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14462389--14462585	85	2.3	84	78	9	218	46	17	14	21	1.84
14462430--14462607	44	4.1	42	78	9	135	47	19	13	19	1.82
14463660--14463693	13	2.7	13	90	4	52	11	8	0	79	0.94
14474097--14474315	58	3.8	57	86	6	289	38	12	6	42	1.69
14474340--14474392	6	9.3	6	87	4	58	77	0	3	18	0.92
14474341--14474402	5	11.4	5	83	10	61	75	0	4	19	0.97
14474340--14474399	12	5.3	12	80	7	65	76	0	5	18	0.96
14474346--14474399	18	3.2	17	84	7	74	75	0	5	18	0.98
14474425--14474473	3	16.0	3	83	12	64	65	2	2	30	1.15
14474430--14474485	27	2.2	27	90	9	91	69	0	1	28	0.98
14474436--14474481	21	2.2	21	92	3	76	69	0	2	28	1.00
14474930--14474975	20	2.2	21	84	7	58	58	17	0	23	1.38
14475228--14475352	24	5.4	22	75	16	110	57	2	4	35	1.33
14475218--14475375	22	6.6	25	76	15	131	58	2	5	33	1.33
14475301--14475401	16	6.1	16	71	21	66	65	0	2	30	1.14
14476508--14476548	9	4.7	9	77	17	50	51	0	2	46	1.14
14476596--14476625	10	2.8	11	90	10	53	30	0	0	70	0.88
14476548--14476641	26	3.5	26	77	10	73	37	1	0	61	1.03
14502693--14502739	22	2.1	21	84	7	58	74	6	6	12	1.20
14506456--14506614	81	2.0	81	100	0	318	37	3	15	44	1.62
14510437--14510500	6	10.2	6	83	12	76	18	0	1	79	0.81
14510426--14510485	27	2.2	27	85	11	79	16	1	1	80	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14510430--14510509	39	2.0	40	90	7	128	20	1	1	77	0.91
14510439--14510507	26	2.6	27	84	11	88	20	0	1	78	0.83
14510439--14510611	6	29.3	6	73	21	50	24	2	3	69	1.15
14510430--14510551	45	2.9	40	82	16	119	20	2	1	75	1.00
14510440--14510547	39	2.7	39	84	7	119	21	1	1	75	1.00
14510621--14510698	22	3.6	21	78	16	70	24	5	7	62	1.42
14511580--14511655	5	14.4	5	76	17	66	15	5	1	77	1.01
14511579--14511665	6	14.7	6	73	17	58	16	5	1	77	1.03
14511579--14511652	17	4.2	17	75	16	62	14	5	1	78	1.00
14511586--14511652	26	2.5	27	85	9	93	14	5	1	77	1.03
14511586--14511666	24	3.0	28	79	18	91	16	7	1	75	1.09
14511676--14511834	60	2.7	58	79	12	180	46	6	12	33	1.69
14515371--14515400	15	1.9	16	93	6	53	86	0	10	3	0.67
14515731--14515814	28	2.9	27	77	16	89	76	0	15	8	1.01
14515739--14515778	21	1.9	21	94	0	71	77	0	15	7	0.98
14515731--14515817	30	3.0	29	81	9	106	75	0	16	8	1.02
14517051--14517421	84	4.4	83	88	4	505	24	16	22	37	1.93
14517051--14517357	42	7.4	41	90	3	463	23	15	22	37	1.93
14517625--14517688	6	10.2	6	77	12	58	18	1	3	76	1.00
14517624--14517737	39	2.8	39	84	10	124	23	1	2	71	1.07
14517820--14517867	22	2.3	21	86	10	64	22	6	6	64	1.39
14517829--14517876	19	2.5	20	79	6	62	25	4	4	66	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14518743--14518857	18	6.6	18	70	16	66	20	2	2	73	1.07
14518732--14518888	23	6.7	23	73	15	92	19	3	2	73	1.10
14518794--14518888	12	8.4	11	77	15	88	15	5	2	76	1.05
14518793--14518870	6	13.7	6	77	10	83	15	5	1	78	0.99
14518779--14518888	17	6.5	16	77	12	87	17	5	1	75	1.08
14518794--14518888	34	2.8	32	81	12	109	15	5	2	76	1.05
14518893--14519291	59	6.9	58	83	9	417	45	7	13	34	1.70
14518906--14519291	114	3.3	115	84	8	498	44	7	13	34	1.72
14518906--14519291	173	2.2	171	85	7	519	44	7	13	34	1.72
14523987--14524016	15	2.1	14	93	6	51	20	0	3	76	0.92
14524035--14524070	15	2.3	15	90	4	54	83	0	13	2	0.76
14526908--14526970	30	2.1	29	82	2	72	14	19	30	36	1.91
14526936--14526972	19	1.9	19	88	0	56	10	18	37	32	1.86
14527069--14527136	27	2.5	27	87	0	100	25	20	22	32	1.98
14527762--14527834	17	4.3	17	82	6	67	13	2	8	75	1.14
14527762--14527819	18	3.3	18	85	4	66	13	1	6	77	1.05
14527798--14527835	16	2.4	16	86	0	58	10	2	15	71	1.25
14527762--14527848	34	2.6	32	77	15	77	14	2	8	74	1.14
14528123--14528621	50	10.1	50	79	7	450	38	19	13	29	1.89
14532881--14532919	14	2.7	14	81	18	53	66	2	20	10	1.33
14540629--14540663	18	1.9	18	88	0	52	31	5	2	60	1.35
14540638--14540675	18	2.1	18	90	5	58	31	0	5	63	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14540823--14540859	18	2.1	18	94	0	65	10	2	0	86	0.67
14541926--14541987	29	2.1	29	85	5	81	19	4	53	22	1.64
14542023--14542087	17	3.8	17	82	8	78	13	1	7	76	1.06
14542026--14542101	16	4.5	15	75	16	62	14	1	7	76	1.07
14544230--14544300	37	1.9	36	83	8	90	33	7	9	49	1.63
14546757--14546832	34	2.2	34	83	0	89	46	15	5	32	1.69
14549839--14549886	18	2.7	17	78	9	51	56	0	8	35	1.30
14549885--14549952	19	3.5	20	78	15	79	57	0	1	41	1.08
14553565--14553696	3	45.7	3	74	14	91	24	2	1	71	1.05
14554454--14554561	18	6.6	16	71	17	71	23	1	3	71	1.12
14554456--14554503	3	17.7	3	79	16	52	22	0	2	75	0.91
14554454--14554504	5	9.6	5	87	8	59	21	0	1	76	0.88
14554567--14554959	58	6.3	58	73	17	226	49	5	9	34	1.60
14554676--14554918	133	1.8	130	87	6	364	50	6	9	33	1.61
14554772--14555136	119	3.0	115	75	15	336	48	6	11	33	1.64
14554603--14555141	191	2.8	190	83	6	649	47	6	11	35	1.64
14554980--14555140	59	2.7	59	86	0	223	46	5	13	34	1.66
14565607--14565645	10	3.8	10	80	6	51	82	0	15	2	0.79
14565608--14565647	12	3.6	12	80	12	50	85	0	12	2	0.71
14566352--14566392	16	2.5	16	88	4	55	24	19	19	36	1.95
14566676--14566822	42	3.4	42	83	2	177	23	14	21	40	1.90
14566695--14566916	45	5.0	45	80	5	213	22	14	20	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14566694--14566905	91	2.4	87	82	3	237	23	14	18	43	1.87
14567126--14567250	3	42.3	3	72	16	66	23	3	1	72	1.08
14567121--14567215	11	8.5	11	72	18	63	20	2	2	75	1.00
14567112--14567245	31	4.4	30	74	15	89	23	2	1	72	1.07
14567113--14567248	30	4.9	27	77	16	113	22	2	1	72	1.06
14567112--14567245	14	9.9	13	70	26	59	23	2	1	72	1.07
14568304--14568451	74	2.0	75	82	11	180	47	7	10	34	1.65
14568418--14568691	61	4.6	61	90	4	391	48	4	12	34	1.61
14568379--14568677	122	2.5	118	82	10	399	48	4	12	34	1.62
14568620--14568763	72	2.0	73	87	6	213	47	6	9	37	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105