genome.fa.s135.2.7.7.80.10.50.1000.48.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  48  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9235898--9235962	30	2.2	30	82	17	82	1	15	3	80	0.92
9240004--9240038	15	2.4	14	85	4	52	0	8	5	85	0.73
9241771--9241863	19	4.7	20	71	10	66	19	9	27	43	1.82
9241884--9241921	13	2.8	14	92	4	60	28	2	13	55	1.51
9252584--9252698	3	39.7	3	72	13	62	31	3	6	59	1.39
9252588--9252646	28	2.1	28	90	0	91	32	3	8	55	1.46
9252576--9252697	27	4.7	24	71	20	77	29	4	6	59	1.41
9253004--9253046	20	2.1	21	83	12	54	23	6	32	37	1.82
9253432--9253503	15	4.6	15	73	21	67	26	0	0	73	0.83
9253435--9253521	24	3.6	24	71	21	74	26	2	0	71	0.98
9253591--9253626	17	2.2	17	90	9	58	77	5	0	16	0.94
9259324--9259362	20	1.9	21	89	5	62	28	15	17	38	1.91
9259579--9259907	55	5.9	55	76	7	245	21	21	13	42	1.88
9260118--9260172	28	2.0	28	82	7	67	38	1	9	50	1.45
9260146--9260225	6	13.7	6	81	12	51	35	0	8	56	1.30
9260138--9260188	17	3.0	18	78	18	56	39	0	13	47	1.43
9260137--9260196	12	5.2	12	76	21	58	40	0	13	46	1.43
9260195--9260225	3	10.3	3	100	0	62	32	0	0	67	0.91
9260554--9260602	21	2.3	23	79	13	59	14	6	36	42	1.70
9260988--9261069	9	8.8	9	76	11	67	20	0	2	76	0.89
9260982--9261058	27	2.8	28	75	11	86	20	0	2	76	0.90
9261006--9261064	21	2.6	22	84	10	75	23	0	3	72	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9260983--9261067	7	12.3	7	71	10	59	20	0	2	77	0.88
9261147--9261179	15	2.1	17	88	11	52	81	6	6	6	0.97
9264279--9264313	16	2.2	16	89	0	52	48	0	2	48	1.16
9264480--9264509	15	1.9	16	93	6	53	66	0	0	33	0.92
9268405--9268451	18	2.6	17	81	18	60	2	25	0	72	0.96
9268489--9268514	2	13.0	2	100	0	52	50	0	0	50	1.00
9268841--9268880	13	3.0	13	88	3	53	25	25	5	45	1.73
9269251--9269289	6	6.3	6	91	5	51	61	0	5	33	1.18
9269251--9269288	19	2.0	19	89	0	58	63	0	5	31	1.17
9271232--9271268	16	2.3	16	90	0	56	72	0	10	16	1.10
9273145--9273184	15	2.7	15	88	0	62	70	0	2	27	1.01
9273450--9273475	2	13.0	2	100	0	52	50	0	0	50	1.00
9273774--9273828	28	2.0	27	82	6	67	58	3	36	1	1.26
9276073--9276132	29	2.1	29	84	3	77	66	10	3	20	1.35
9276451--9276486	14	2.6	14	90	0	54	36	0	0	63	0.94
9276747--9276815	3	23.7	3	88	5	97	63	0	2	33	1.09
9276986--9277033	22	2.2	22	85	14	64	72	0	6	20	1.05
9277470--9277513	13	3.4	13	83	0	52	61	20	2	15	1.45
9277628--9277653	13	2.0	13	100	0	52	61	23	0	15	1.33
9283416--9283461	18	2.6	18	80	19	60	82	0	10	6	0.83
9284211--9284253	8	4.8	9	83	16	54	81	0	11	6	0.87
9284210--9284256	9	5.0	10	80	19	57	78	0	12	8	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9284210--9284254	20	2.3	20	80	3	56	82	0	11	6	0.84
9284746--9284815	7	9.4	7	73	17	61	80	0	17	2	0.84
9286474--9286530	9	6.3	9	82	6	62	70	1	22	5	1.17
9286479--9286530	18	2.9	18	88	5	79	71	0	23	5	1.07
9286886--9286990	34	3.3	32	76	22	107	59	0	0	40	1.04
9286898--9286985	20	4.3	20	76	12	81	56	0	1	42	1.06
9286903--9286987	27	3.1	27	75	16	95	56	0	1	42	1.07
9286931--9287011	7	11.6	7	81	5	56	61	0	2	35	1.09
9286973--9287020	22	2.2	22	81	7	53	70	4	2	22	1.15
9287230--9287264	2	17.5	2	87	0	52	48	2	2	45	1.32
9288697--9288745	11	4.4	11	76	5	53	67	2	4	26	1.19
9289378--9289419	13	3.2	13	86	0	57	57	19	7	16	1.62
9289459--9289548	39	2.3	40	81	9	96	43	18	13	24	1.86
9290322--9290360	17	2.3	17	90	0	60	53	5	0	41	1.23
9297436--9297935	251	2.0	252	90	1	781	35	12	14	37	1.85
9298048--9298239	62	3.1	60	75	8	179	36	15	14	34	1.87
9309476--9309525	24	2.1	23	81	3	55	42	6	2	50	1.38
9309490--9309529	20	2.0	20	85	9	55	37	5	0	57	1.21
9311507--9311545	20	1.9	20	89	5	60	30	0	5	64	1.15
9311640--9311723	43	2.0	43	83	2	107	54	8	1	35	1.38
9313419--9313459	21	2.1	19	86	9	55	65	0	14	19	1.26
9314366--9314437	22	3.3	22	82	0	90	34	5	20	38	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9314354--9314462	44	2.5	42	73	19	105	35	6	18	39	1.76
9315830--9315865	17	2.0	19	89	10	58	25	2	16	55	1.55
9316370--9316632	146	1.8	146	87	0	391	37	18	15	28	1.92
9318212--9318252	21	2.0	21	85	9	57	31	0	29	39	1.57
9319856--9319896	21	2.0	21	85	9	57	26	7	9	56	1.58
9328045--9328597	284	1.9	285	89	1	849	32	17	15	34	1.91
9328928--9328991	30	2.1	30	97	0	119	25	32	9	32	1.88
9340598--9340654	9	6.4	9	78	11	55	77	0	3	19	0.92
9340605--9340659	27	2.0	28	82	10	69	76	0	5	18	0.97
9340887--9340922	19	1.9	19	88	5	56	61	0	0	38	0.96
9340886--9340933	19	2.4	20	80	16	55	64	0	0	35	0.94
9344000--9344069	22	3.2	22	95	0	122	32	14	24	28	1.94
9345323--9345373	25	2.1	24	81	3	57	39	5	11	43	1.66
9346295--9346547	125	2.0	125	80	3	276	36	12	12	38	1.81
9347101--9347198	40	2.5	40	86	0	124	37	9	19	33	1.83
9347121--9347246	40	3.1	41	83	7	157	36	9	16	37	1.82
9347136--9347246	43	2.7	42	85	4	145	36	10	15	36	1.82
9348279--9348422	52	2.8	51	84	4	180	26	24	7	41	1.81
9348457--9348489	11	3.0	11	90	0	57	48	27	0	24	1.51
9348720--9348785	25	2.6	25	82	0	69	25	28	7	37	1.83
9348815--9348929	31	3.7	31	84	4	160	30	21	17	30	1.96
9349415--9349570	52	3.0	52	79	14	144	30	18	5	45	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9349591--9349626	11	3.3	11	84	0	54	44	30	0	25	1.54
9349853--9349921	25	2.8	25	84	4	77	23	34	7	34	1.82
9349965--9350032	31	2.2	31	89	0	100	25	20	20	33	1.97
9350520--9350663	52	2.8	51	84	4	180	26	24	7	41	1.81
9350698--9350730	11	3.0	11	90	0	57	48	27	0	24	1.51
9350962--9351027	25	2.6	25	82	0	69	25	28	7	37	1.83
9351057--9351171	31	3.7	31	84	4	160	30	21	17	30	1.96
9351658--9351813	52	3.0	52	79	14	144	30	18	5	45	1.73
9351834--9351869	11	3.3	11	84	0	54	44	30	0	25	1.54
9352096--9352164	25	2.8	25	84	4	77	23	34	7	34	1.82
9352208--9352275	31	2.2	31	89	0	100	25	20	20	33	1.97
9352783--9352816	14	2.4	14	100	0	68	17	23	5	52	1.66
9352796--9352927	52	2.5	52	89	3	203	24	23	8	43	1.81
9352948--9352983	11	3.3	11	92	0	63	44	27	0	27	1.55
9354395--9354425	11	2.8	11	90	0	53	12	3	0	83	0.75
9355341--9355369	2	14.5	2	100	0	58	51	0	0	48	1.00
9360306--9360342	2	19.0	2	88	5	58	45	0	0	54	1.00
9360505--9360576	18	4.1	18	73	14	69	59	0	0	40	0.97
9360760--9360790	2	15.5	2	93	0	53	48	3	0	48	1.17
9363104--9363134	12	2.6	12	94	0	53	83	3	0	12	0.75
9364250--9364310	29	2.2	28	80	11	72	49	1	6	42	1.38
9365208--9365264	26	2.1	28	83	6	73	73	0	14	12	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9366835--9366917	42	2.0	42	82	0	103	21	22	7	48	1.75
9367470--9367526	18	3.4	17	70	20	57	28	8	7	56	1.56
9367448--9367525	32	2.4	32	86	0	102	26	8	7	56	1.57
9368202--9368412	42	5.2	41	72	13	161	50	16	9	24	1.74
9370122--9370153	15	2.0	17	88	11	50	56	9	0	34	1.32
9371522--9371552	15	2.0	16	93	6	55	48	6	19	25	1.72
9372358--9372401	24	1.9	24	90	9	74	18	4	11	65	1.40
9391346--9391392	8	5.8	8	80	14	51	82	2	0	14	0.75
9392377--9392642	52	5.2	51	83	8	312	34	12	17	35	1.88
9392381--9392638	103	2.5	103	84	8	355	34	12	17	35	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105