genome.fa.s135.2.7.7.80.10.50.1000.93.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  93  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16495975--16496018	21	2.1	21	91	0	70	34	9	34	22	1.86
16500052--16500085	16	2.1	16	89	10	52	55	0	0	44	0.99
16501263--16501348	30	2.8	30	77	18	88	51	2	8	38	1.45
16503481--16503528	3	16.0	3	95	0	87	66	2	0	31	1.03
16504468--16504497	5	6.2	5	92	7	53	36	0	0	63	0.95
16504471--16504497	14	1.9	14	100	0	54	37	0	0	62	0.95
16505994--16506045	24	2.2	25	82	6	63	11	9	3	75	1.18
16507355--16507494	67	2.0	68	86	6	192	33	11	18	36	1.87
16508650--16508680	15	2.1	15	93	0	53	41	0	29	29	1.56
16511927--16511987	2	31.0	2	93	3	106	0	50	1	47	1.10
16515671--16515703	16	1.9	17	88	11	50	60	3	0	36	1.12
16516050--16516120	31	2.3	31	87	4	99	30	7	2	59	1.39
16516738--16516770	17	1.9	17	93	0	57	63	0	3	33	1.10
16516798--16516859	17	3.4	17	73	16	61	61	4	1	32	1.27
16516784--16516868	38	2.2	38	95	2	152	60	5	1	32	1.29
16516807--16516875	19	3.6	19	75	23	72	60	4	2	31	1.31
16517570--16517630	31	2.0	31	83	6	79	42	0	4	52	1.23
16517618--16517661	19	2.2	19	88	8	61	50	0	4	45	1.22
16517632--16517674	19	2.3	19	84	8	52	53	2	4	39	1.34
16519209--16519250	22	1.9	22	85	9	59	73	7	4	14	1.21
16525343--16525399	30	1.9	30	82	7	71	5	21	5	68	1.29
16526654--16526695	18	2.4	18	92	7	70	50	0	11	38	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16528484--16528718	61	3.9	60	82	8	296	33	10	5	50	1.59
16528484--16528841	122	2.9	124	82	7	388	35	10	5	48	1.61
16528728--16528842	59	2.0	58	91	1	185	38	10	6	45	1.63
16528736--16528856	59	2.1	59	88	0	179	38	12	4	43	1.64
16529850--16529890	12	3.3	13	80	6	50	78	0	2	19	0.87
16530110--16530296	42	4.5	42	77	10	161	47	14	12	25	1.79
16530110--16530252	42	3.4	42	83	7	168	47	12	12	27	1.77
16530110--16530265	83	1.8	86	84	9	214	46	14	12	26	1.79
16530234--16530390	44	3.5	44	81	3	181	49	17	10	23	1.77
16533485--16533585	30	3.4	31	75	13	95	73	10	0	14	1.15
16533526--16533585	12	4.4	12	74	25	57	76	11	0	11	1.02
16533530--16533577	19	2.7	19	78	12	57	75	14	0	10	1.06
16533485--16533585	29	3.4	30	75	5	107	73	10	0	14	1.15
16534626--16534668	22	1.9	23	85	4	61	41	0	9	48	1.35
16546232--16546338	9	12.6	8	83	12	92	80	1	2	14	0.92
16546287--16546322	5	7.8	5	82	17	51	80	0	0	19	0.71
16546233--16546333	51	2.0	52	84	9	136	80	1	2	14	0.93
16546243--16546339	13	7.6	12	71	20	72	81	2	3	13	0.90
16547380--16548604	73	16.8	73	84	5	1435	22	22	11	42	1.86
16547380--16548604	142	8.4	146	83	7	1400	22	22	11	42	1.86
16548339--16548453	35	3.3	34	72	7	106	21	26	13	39	1.90
16548326--16548427	34	3.0	34	72	5	107	21	27	11	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16548424--16548648	35	6.3	35	69	10	125	19	20	13	45	1.84
16548992--16549057	14	4.8	14	72	20	50	72	7	1	18	1.15
16548994--16549100	37	2.8	37	80	8	108	74	10	0	14	1.11
16549047--16549125	23	3.5	21	74	23	63	77	11	1	10	1.06
16549034--16549105	16	4.5	15	75	19	65	79	11	0	9	0.95
16548994--16549091	39	2.5	40	80	8	121	75	9	1	14	1.09
16549952--16549994	22	1.9	23	85	4	61	44	0	6	48	1.29
16559780--16560023	61	4.1	60	80	7	275	36	10	6	47	1.62
16559784--16560019	122	2.0	118	88	3	355	34	10	5	49	1.61
16559948--16560090	72	2.0	72	87	8	211	36	8	6	48	1.59
16560015--16560205	58	3.2	58	81	6	231	36	8	5	49	1.57
16560143--16560288	69	2.1	68	80	12	165	34	9	4	52	1.53
16560382--16560429	25	1.9	25	87	8	71	41	6	2	50	1.39
16560382--16560437	25	2.2	25	84	9	69	41	5	5	48	1.49
16560488--16560531	22	2.0	22	86	13	63	75	6	9	9	1.20
16560807--16560868	31	2.0	30	81	15	72	4	27	0	67	1.10
16560823--16560861	20	2.0	20	90	10	62	0	30	0	69	0.89
16560819--16560868	11	4.7	11	74	16	52	0	28	0	72	0.86
16564113--16564166	24	2.3	22	79	17	63	77	1	9	11	1.06
16564125--16564168	7	5.7	7	84	12	52	81	0	6	11	0.86
16564124--16564176	24	2.3	23	90	9	81	77	0	11	11	1.00
16564845--16564908	23	2.8	23	81	6	69	29	20	9	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16565215--16565561	32	10.8	32	72	7	186	21	20	10	46	1.80
16565281--16565529	129	1.9	128	80	5	288	22	20	10	46	1.81
16565507--16565651	63	2.3	62	80	4	157	21	18	9	50	1.75
16565459--16565659	32	6.3	32	74	5	131	21	18	10	48	1.78
16565770--16565860	33	2.8	33	84	1	112	26	17	16	39	1.91
16565772--16565877	33	3.3	32	79	7	99	25	18	15	40	1.90
16566256--16566300	22	2.0	23	86	4	65	26	11	2	60	1.42
16569339--16569383	24	1.9	23	86	4	63	33	6	8	51	1.59
16569682--16569755	37	2.0	37	86	5	105	41	1	8	48	1.41
16570817--16570842	2	13.0	2	100	0	52	0	50	0	50	1.00
16571378--16571431	25	2.2	25	83	6	65	33	1	3	61	1.25
16575475--16575522	25	1.9	25	83	8	62	66	0	8	25	1.19
16579778--16579802	2	12.5	2	100	0	50	52	48	0	0	1.00
16581115--16581179	23	2.8	22	76	17	60	30	1	13	53	1.49
16581171--16581209	13	3.0	13	82	14	53	43	0	7	48	1.31
16581314--16581355	20	2.0	22	86	9	61	52	2	0	45	1.13
16581306--16581376	33	2.2	33	82	5	81	59	2	0	38	1.12
16581427--16581493	28	2.3	30	87	5	93	55	2	0	41	1.15
16583687--16583901	119	1.8	119	96	0	403	22	16	15	45	1.85
16583806--16583999	97	2.0	97	98	0	379	23	16	12	46	1.81
16583687--16584117	216	2.0	216	96	0	799	22	16	14	45	1.84
16583903--16584141	119	2.0	119	97	0	451	22	15	15	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16589533--16589569	2	18.5	2	100	0	74	51	0	0	48	1.00
16593154--16593183	4	7.5	4	100	0	60	26	23	23	26	2.00
16594108--16594133	2	13.0	2	100	0	52	50	0	0	50	1.00
16599191--16599244	21	2.5	22	82	11	67	55	12	11	20	1.67
16599409--16599435	14	1.9	14	100	0	54	59	0	0	40	0.98
16599511--16599536	13	2.0	13	100	0	52	53	0	0	46	1.00
16599798--16599878	37	2.2	38	86	4	112	45	0	4	49	1.23
16602725--16602762	2	19.5	2	94	5	69	47	0	0	52	1.00
16608917--16608968	23	2.1	24	82	13	61	55	5	1	36	1.35
16611555--16611579	12	2.1	12	100	0	50	0	8	0	92	0.40
16614652--16614726	2	37.5	2	97	0	141	1	49	0	49	1.09
16618431--16618458	13	2.2	13	100	0	56	32	14	0	53	1.41
16623138--16623178	21	2.0	21	85	4	57	43	9	4	41	1.59
16627082--16627111	2	15.0	2	100	0	60	50	0	0	50	1.00
16628809--16628854	23	2.0	23	83	8	58	30	23	8	36	1.85
16638355--16638391	20	1.9	19	89	10	58	59	0	0	40	0.97
16645856--16645902	24	1.9	25	83	12	62	42	2	27	27	1.67
16656307--16656347	6	7.2	6	83	10	59	65	0	0	34	0.93
16656296--16656353	22	2.6	22	91	8	91	62	1	0	36	1.06
16659981--16660012	14	2.3	15	89	10	50	56	0	0	43	0.99
16660285--16660336	24	2.3	21	90	9	77	34	0	0	65	0.93
16660285--16660333	22	2.1	22	92	7	80	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16660291--16660350	18	3.2	18	78	17	59	35	0	0	65	0.93
16661989--16662091	47	2.2	46	83	11	129	42	2	19	34	1.66
16662729--16662801	38	1.9	38	85	0	101	47	6	13	31	1.69
16663393--16663429	19	1.9	20	88	5	58	59	2	0	37	1.12
16672366--16672413	24	2.0	24	83	4	60	52	18	4	25	1.63
16675647--16675688	13	3.3	12	83	9	57	50	0	0	50	1.00
16675650--16675707	26	2.2	26	81	6	73	41	0	3	55	1.17
16678713--16678753	18	2.3	18	86	0	64	60	2	0	36	1.10
16679240--16679275	16	2.3	15	90	4	54	36	2	0	61	1.11
16686536--16686572	19	1.9	19	88	0	56	48	0	2	48	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105