genome.fa.s135.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  26  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5238193--5238230	19	2.0	20	89	5	60	28	0	10	60	1.30
5238913--5238985	33	2.2	33	82	4	85	43	5	10	39	1.63
5240232--5240912	161	4.2	161	82	3	703	41	14	9	33	1.78
5242499--5242730	124	1.9	125	82	5	301	36	12	15	36	1.84
5243730--5243768	18	2.1	19	85	9	53	23	2	0	74	0.94
5246944--5246988	13	3.4	14	87	9	58	51	0	0	48	1.00
5246945--5246983	19	2.1	19	85	9	53	51	0	0	48	1.00
5246994--5247042	16	3.0	15	80	14	53	46	4	0	48	1.20
5247008--5247067	24	2.4	25	83	13	88	50	3	0	46	1.18
5256100--5256124	13	1.9	13	100	0	50	16	16	8	60	1.58
5263900--5263947	24	2.0	25	83	4	62	43	0	8	47	1.33
5265105--5265140	17	2.1	17	89	0	54	41	13	11	33	1.80
5265203--5265272	33	2.1	35	82	15	87	12	2	8	75	1.13
5265208--5265260	27	2.0	27	85	7	72	11	1	9	77	1.07
5267983--5268031	22	2.2	22	92	0	80	22	14	26	36	1.92
5269108--5269156	15	2.9	17	85	8	66	6	10	0	83	0.80
5269261--5269318	24	2.3	26	85	8	75	13	8	0	77	0.98
5270336--5270373	2	19.0	2	94	0	67	47	0	2	50	1.15
5270717--5270773	24	2.4	24	87	0	87	21	28	24	26	1.99
5272400--5272438	11	3.5	11	83	13	53	33	0	0	66	0.92
5272704--5272747	10	4.5	10	81	16	56	29	0	2	68	1.02
5274523--5274610	34	2.6	34	80	1	88	31	17	15	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5274553--5274641	34	2.6	34	82	5	92	33	17	12	35	1.88
5274555--5274652	34	2.9	33	80	7	83	31	18	13	36	1.89
5275149--5275182	10	3.4	10	91	0	50	61	0	2	35	1.11
5284173--5284239	27	2.5	27	95	0	116	43	13	8	34	1.75
5284225--5284309	42	2.0	42	93	0	143	43	12	12	30	1.81
5284310--5284349	18	2.4	17	87	8	55	40	20	5	35	1.74
5285384--5285436	24	2.2	25	89	3	81	50	0	1	47	1.12
5285739--5285784	3	15.3	3	100	0	92	32	0	0	67	0.91
5294748--5295249	247	2.0	247	88	0	734	30	12	15	42	1.83
5295304--5295343	18	2.2	18	86	8	55	77	10	2	10	1.08
5297453--5297500	16	2.9	16	84	12	53	77	0	4	18	0.93
5298689--5298754	33	1.9	35	81	6	82	53	15	1	30	1.51
5300312--5300341	1	30.0	1	93	0	51	0	0	3	96	0.21
5307272--5307296	11	2.3	11	100	0	50	28	0	0	72	0.86
5312582--5312676	30	3.2	30	78	3	102	38	16	4	40	1.68
5318638--5318721	31	2.8	31	81	3	100	30	16	25	27	1.97
5319623--5319688	31	2.1	31	85	0	87	33	13	22	30	1.93
5321921--5322135	62	3.6	58	80	11	261	39	12	6	42	1.68
5321921--5322135	61	3.6	58	80	8	268	39	12	6	42	1.68
5322168--5322278	16	6.7	16	69	22	52	72	2	3	20	1.12
5322168--5322281	17	6.9	16	69	18	65	73	2	3	20	1.10
5322158--5322213	25	2.2	25	87	6	78	80	0	7	12	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5323120--5323218	41	2.4	41	81	6	110	60	5	4	30	1.36
5323112--5323221	21	5.2	20	67	15	62	62	4	3	29	1.32
5323583--5323694	38	2.9	39	81	7	140	38	18	15	27	1.91
5323741--5323780	8	4.8	8	84	9	53	5	2	10	82	0.91
5323823--5324056	42	5.8	42	83	12	271	37	19	17	25	1.94
5323864--5324056	83	2.4	82	89	10	292	36	20	18	25	1.95
5325057--5325125	18	4.1	18	78	10	67	10	10	0	79	0.93
5325057--5325109	18	3.0	18	86	2	72	9	9	0	81	0.89
5325047--5325127	22	3.8	22	73	21	57	9	11	0	79	0.95
5325057--5325127	16	4.1	17	78	14	67	9	9	0	80	0.91
5325064--5325125	17	3.9	16	81	10	65	9	8	0	82	0.85
5325057--5325118	17	3.6	16	82	10	70	11	9	0	79	0.95
5325062--5325128	33	2.0	33	83	13	84	10	7	0	82	0.85
5336056--5336133	33	2.4	32	80	2	84	46	0	6	47	1.28
5339610--5339645	14	2.6	14	90	0	54	58	2	30	8	1.42
5350861--5350914	2	29.0	2	82	14	71	53	0	1	44	1.11
5360293--5360333	2	20.5	2	100	0	82	51	0	0	48	1.00
5360908--5360962	29	1.9	29	85	3	76	40	14	7	38	1.74
5361035--5361083	24	2.1	24	85	11	66	55	2	2	40	1.23
5363978--5364015	20	1.9	20	88	0	58	31	28	10	28	1.90
5368141--5368190	24	2.1	24	82	14	59	36	2	4	58	1.29
5369227--5369317	23	3.4	27	74	21	77	50	1	1	47	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5370523--5370559	16	2.2	17	90	4	58	72	18	2	5	1.15
5371464--5371550	32	2.7	31	77	7	93	51	9	3	35	1.51
5373002--5373062	21	2.8	20	80	11	68	21	3	0	75	0.94
5373370--5373418	21	2.4	20	77	12	55	75	2	0	22	0.90
5374632--5375177	50	10.7	51	79	9	528	40	19	10	29	1.85
5374644--5375177	102	5.3	102	82	6	579	40	19	10	29	1.85
5374807--5375193	103	3.8	98	82	7	323	42	18	9	29	1.82
5375276--5375651	147	2.6	147	85	2	506	42	19	13	23	1.87
5375668--5375955	82	3.3	82	78	14	335	40	17	12	29	1.87
5375799--5375828	14	2.1	14	93	0	51	56	13	16	13	1.67
5375717--5375910	96	2.0	96	92	0	325	43	16	12	26	1.84
5376121--5376169	23	2.1	23	88	0	71	28	14	10	46	1.77
5376341--5376368	3	9.3	3	100	0	56	67	0	0	32	0.91
5376508--5376676	44	3.7	44	76	15	146	40	20	11	28	1.86
5388726--5388755	11	2.6	12	89	10	53	23	0	0	76	0.78
5388891--5388951	21	3.0	21	79	6	56	77	3	1	18	0.99
5389024--5389072	21	2.3	21	92	0	80	6	18	38	36	1.76
5389943--5389976	10	3.3	10	88	8	50	14	0	8	76	1.01
5389908--5389976	11	6.2	11	73	15	52	10	5	7	76	1.14
5395576--5395720	49	3.1	47	74	14	129	37	19	8	33	1.83
5399038--5400355	658	2.0	658	96	0	2447	35	15	11	36	1.84
5401308--5401356	25	2.0	25	88	8	73	48	4	6	40	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5401448--5401473	13	2.0	13	100	0	52	84	0	0	15	0.62
5402499--5402567	21	3.3	20	74	6	66	21	43	2	31	1.67
5402539--5402585	20	2.3	20	85	3	58	23	38	0	38	1.55
5402625--5402674	22	2.4	20	83	9	64	4	30	6	60	1.39
5402966--5402992	13	2.1	13	100	0	54	25	29	0	44	1.54
5403108--5403149	21	2.0	21	85	0	57	52	2	4	40	1.35
5403501--5403528	2	14.0	2	100	0	56	50	0	0	50	1.00
5405403--5405546	72	2.0	72	98	0	279	34	13	15	36	1.87
5406382--5406624	81	2.9	85	85	6	300	34	17	11	36	1.86
5406563--5406962	208	1.9	209	92	0	676	29	14	16	39	1.88
5409626--5409657	16	2.0	16	93	0	55	84	6	9	0	0.78
5413344--5413382	16	2.4	16	82	4	51	53	0	0	46	1.00
5414100--5414156	22	2.7	21	76	10	62	77	7	5	10	1.12
5414332--5414382	20	2.5	21	75	12	52	50	3	1	43	1.31
5414973--5414997	10	2.5	10	100	0	50	76	8	0	16	1.02
5415120--5415191	16	4.8	16	74	14	64	56	0	1	41	1.07
5415152--5415224	8	10.0	8	71	15	52	61	0	0	38	0.96
5421765--5421950	94	2.0	94	94	2	329	40	25	7	26	1.82
5428731--5428778	13	3.5	13	72	10	51	66	2	4	27	1.21
5429304--5429384	38	2.2	39	78	17	91	55	3	1	39	1.25
5433337--5433374	10	3.8	10	100	0	76	18	31	0	50	1.47
5434607--5434646	20	2.0	19	85	9	53	42	0	2	55	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5434889--5434923	18	1.9	18	94	0	61	31	17	5	45	1.71
5435579--5435609	16	1.9	16	93	0	53	54	0	0	45	0.99
5435559--5435636	26	3.1	26	71	14	74	43	1	0	55	1.08
5435704--5435746	19	2.4	19	84	7	54	30	0	2	67	1.03
5435765--5435820	22	2.5	23	82	11	71	55	1	0	42	1.10
5439390--5439470	40	2.0	40	95	0	144	19	22	20	37	1.95
5441086--5441359	143	1.9	143	82	3	345	36	14	8	40	1.76
5441057--5441374	143	2.2	142	79	6	343	37	15	8	38	1.78
5444544--5444664	56	2.2	56	81	11	133	33	7	4	55	1.47
5444755--5445017	91	2.9	91	86	3	350	36	6	7	49	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105