genome.fa.s135.2.7.7.80.10.50.1000.67.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  67  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11906897--11906966	21	3.5	21	78	18	62	42	0	4	52	1.20
11908884--11908918	18	1.9	18	100	0	70	22	34	14	28	1.93
11910884--11910908	2	12.5	2	100	0	50	52	0	0	48	1.00
11915302--11915331	14	2.1	15	93	6	53	70	0	3	26	1.03
11917747--11917804	21	2.8	20	84	7	64	63	0	0	36	0.94
11917766--11917804	11	3.6	11	86	6	53	69	0	0	30	0.89
11922892--11922930	20	1.9	21	94	5	71	51	0	0	48	1.00
11923389--11923426	15	2.4	16	78	4	51	42	2	15	39	1.61
11934126--11934161	18	2.0	18	88	0	54	22	11	0	66	1.22
11934167--11934229	19	3.2	19	80	10	72	22	1	1	74	0.99
11938172--11938225	10	5.2	10	82	6	63	83	0	12	3	0.78
11938178--11938228	17	2.9	17	83	11	59	82	0	15	1	0.76
11938178--11938225	21	2.3	21	85	7	62	83	0	14	2	0.74
11938515--11938560	9	5.0	9	89	5	74	84	2	13	0	0.71
11938515--11938560	19	2.5	19	92	3	76	84	2	13	0	0.71
11939280--11939494	114	1.9	115	80	2	254	24	26	12	37	1.90
11939893--11939922	10	3.0	10	95	0	51	30	0	13	56	1.37
11939907--11939940	15	2.3	15	94	0	59	35	2	14	47	1.60
11939975--11940027	3	19.0	3	75	14	51	33	3	1	60	1.26
11940915--11940992	19	3.9	19	79	12	77	23	3	0	73	1.00
11945550--11945600	25	2.0	25	100	0	102	45	23	0	31	1.53
11948600--11948639	18	2.2	18	90	0	62	35	5	2	57	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11948841--11948866	12	2.2	12	100	0	52	57	0	0	42	0.98
11955191--11955240	26	1.9	26	95	0	91	42	16	16	26	1.88
11960620--11960662	10	4.2	10	77	16	52	51	0	0	48	1.00
11971642--11971685	3	14.7	3	90	9	72	65	0	0	34	0.93
11973303--11973346	20	2.2	20	87	4	61	40	9	11	38	1.73
11975373--11975426	14	3.9	14	76	13	58	85	3	7	3	0.83
11975372--11975443	11	7.0	10	71	22	60	83	5	6	4	0.91
11975372--11975443	21	3.5	19	77	21	67	83	5	6	4	0.91
11975373--11975440	20	3.4	19	76	15	66	83	5	5	4	0.89
11976712--11976803	35	2.7	33	85	10	105	20	17	8	53	1.70
11976788--11976882	35	2.8	34	78	10	95	20	18	9	51	1.73
11976920--11977006	35	2.5	34	79	7	102	24	20	6	48	1.74
11977433--11977479	25	2.0	24	84	12	62	82	12	0	4	0.80
11977433--11977477	18	2.4	19	85	10	58	82	13	0	4	0.82
11977433--11977479	21	2.3	20	88	3	67	82	12	0	4	0.80
11979417--11979479	3	21.0	3	100	0	126	33	0	0	66	0.92
11982893--11982929	19	1.9	19	100	0	74	40	10	0	48	1.38
11984124--11984206	26	3.6	21	70	24	60	40	0	1	57	1.06
11985470--11985538	32	2.2	32	86	0	93	44	4	8	42	1.55
11987822--11987873	17	3.1	17	82	15	56	15	7	1	75	1.12
11987822--11987864	17	2.4	18	88	3	61	13	9	2	74	1.16
11987822--11987873	16	3.2	16	86	2	59	15	7	1	75	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11993871--11993896	9	2.9	9	100	0	52	11	19	0	69	1.18
11996152--11996201	26	1.9	26	100	0	100	28	16	8	48	1.74
12001135--12001213	39	2.0	39	97	0	149	25	11	5	58	1.53
12011301--12011356	27	2.2	26	83	6	69	17	14	16	51	1.76
12016066--12016116	17	2.9	17	82	11	59	78	0	13	7	0.96
12016888--12016937	3	16.7	3	100	0	100	66	0	0	34	0.92
12020734--12020759	13	2.0	13	100	0	52	38	15	23	23	1.92
12025716--12025741	12	2.2	12	100	0	52	38	0	0	61	0.96
12025761--12025807	23	2.0	23	95	0	85	53	0	0	46	1.00
12026576--12026619	22	2.0	22	100	0	88	40	13	13	31	1.84
12039384--12039413	9	3.3	9	90	0	51	3	0	20	76	0.92
12040086--12040159	31	2.3	33	90	6	118	70	8	14	6	1.32
12041249--12041528	145	1.9	145	89	2	429	25	13	23	38	1.91
12044714--12044765	3	17.7	3	84	4	70	63	3	1	30	1.23
12044944--12045114	65	2.6	65	82	6	195	47	12	17	22	1.80
12044945--12045127	64	2.8	64	84	4	208	47	12	18	22	1.81
12045262--12045332	34	2.1	34	84	5	90	36	7	15	40	1.74
12045344--12045505	84	1.9	85	85	1	227	37	11	17	32	1.86
12045589--12045802	55	3.9	54	76	6	155	42	14	20	22	1.88
12045644--12045808	55	3.0	55	79	0	161	43	16	20	20	1.89
12046049--12046146	30	3.4	30	69	15	89	41	15	20	22	1.89
12046050--12046209	55	2.9	54	85	4	196	41	16	20	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12046965--12047019	1	55.0	1	79	0	56	1	7	1	89	0.63
12047313--12047346	17	2.0	17	94	0	59	8	2	0	88	0.62
12047313--12047346	8	4.1	8	85	7	50	8	2	0	88	0.62
12047316--12047355	17	2.4	17	86	0	53	12	5	0	82	0.82
12048916--12048940	12	2.1	12	100	0	50	28	32	8	32	1.86
12052215--12052252	13	2.9	13	96	0	67	21	44	7	26	1.79
12053179--12053231	23	2.4	22	87	3	70	56	18	9	15	1.65
12053336--12053379	9	4.9	9	94	0	79	20	2	45	31	1.64
12053499--12053699	63	3.2	64	77	6	180	33	12	10	43	1.76
12054534--12054618	43	2.0	43	92	0	143	34	2	28	35	1.70
12056885--12056909	12	2.1	12	100	0	50	8	16	8	68	1.38
12058919--12058962	18	2.4	18	80	0	61	34	13	11	40	1.81
12063339--12063689	158	2.2	159	83	3	447	40	10	17	31	1.83
12063339--12063758	158	2.7	158	80	5	395	39	11	17	31	1.85
12063856--12064155	158	1.9	158	79	2	343	39	10	18	31	1.85
12063452--12064665	405	3.0	405	95	0	2160	41	11	18	29	1.85
12064266--12065061	158	5.0	159	75	3	622	39	11	17	31	1.85
12066123--12066160	19	2.0	20	89	5	60	44	34	0	21	1.52
12067700--12067742	17	2.8	16	86	10	54	76	6	9	6	1.15
12069126--12069150	4	6.2	4	100	0	50	24	24	0	52	1.48
12079288--12079313	3	8.7	3	100	0	52	30	0	0	69	0.89
12080554--12080598	3	14.7	3	82	13	56	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12080554--12080599	19	2.5	19	83	13	60	34	0	0	65	0.93
12081219--12081263	22	2.0	23	87	12	67	35	6	0	57	1.25
12081975--12082233	126	2.0	127	90	3	407	16	4	32	47	1.66
12083105--12083172	19	3.6	19	68	7	66	32	16	17	33	1.92
12083100--12083174	38	2.0	38	89	0	114	36	16	16	32	1.90
12084809--12084847	15	2.5	16	87	4	53	58	0	0	41	0.98
12085492--12085521	8	3.8	8	100	0	60	66	0	0	33	0.92
12085729--12085770	20	2.0	22	86	9	61	50	2	0	47	1.14
12085748--12085787	13	3.1	13	81	0	53	57	0	0	42	0.98
12086238--12086322	33	2.5	33	79	5	100	40	9	4	45	1.57
12086265--12086361	33	2.9	33	79	3	95	39	14	5	41	1.68
12090063--12090123	30	2.0	30	93	0	104	32	21	14	31	1.93
12100436--12100805	15	23.6	15	66	20	152	54	2	1	40	1.25
12100430--12100536	46	2.3	49	87	6	150	54	2	1	41	1.26
12100453--12100800	13	26.4	13	68	23	101	54	2	2	40	1.25
12100571--12100773	111	1.8	111	85	4	284	54	1	1	41	1.23
12100659--12100705	23	2.0	23	91	0	76	57	2	4	36	1.30
12100566--12100805	7	33.4	7	64	17	57	55	2	1	41	1.22
12100693--12100734	22	2.0	21	90	4	66	50	0	0	50	1.00
12100888--12100928	16	2.7	15	85	7	55	48	2	0	48	1.14
12100898--12100947	26	2.0	25	96	4	91	52	2	0	46	1.12
12100888--12100953	15	4.5	16	70	24	56	48	1	0	50	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12101491--12101530	19	2.1	19	90	0	62	65	15	2	17	1.39
12101620--12101696	9	8.4	9	69	13	50	28	3	5	62	1.35
12101628--12101668	19	2.2	19	87	12	59	19	2	4	73	1.13
12101802--12101851	26	1.9	26	87	0	73	30	4	4	62	1.32
12101866--12101925	18	3.2	18	77	17	61	28	0	11	60	1.32
12102040--12102109	18	3.8	18	79	5	70	21	4	4	70	1.23
12102041--12102110	9	7.7	9	73	7	52	21	4	4	70	1.23
12104521--12104587	34	1.9	34	88	8	100	38	7	0	53	1.29
12104874--12104946	26	3.0	23	81	13	92	52	1	2	43	1.24
12105017--12105079	27	2.5	25	82	12	83	53	6	1	38	1.36

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105