genome.fa.s135.2.7.7.80.10.50.1000.34.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  34  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6685078--6685131	27	2.0	27	100	0	108	59	3	14	22	1.51
6685081--6685168	22	3.8	22	76	13	70	57	2	12	27	1.47
6685130--6685262	22	6.2	21	71	16	94	49	2	9	38	1.48
6685165--6685270	44	2.5	41	77	8	122	48	2	9	39	1.50
6685283--6685413	44	3.0	43	76	3	102	46	9	6	37	1.62
6685336--6685478	22	6.6	22	75	6	112	50	7	6	35	1.56
6685337--6685461	43	2.9	44	76	4	121	50	8	6	35	1.57
6685842--6685881	21	1.9	21	94	0	71	50	7	10	32	1.64
6686002--6686071	22	3.2	22	83	2	88	47	2	8	41	1.49
6686018--6686100	22	3.8	22	75	9	80	45	3	10	39	1.57
6686018--6686100	43	1.9	44	85	2	114	45	3	10	39	1.57
6686159--6686233	22	3.4	22	80	8	64	45	8	5	41	1.56
6686316--6686434	22	5.4	22	71	7	71	42	4	10	42	1.59
6686310--6686455	44	3.3	44	70	5	116	39	5	13	41	1.67
6686866--6686925	20	2.9	21	80	5	68	46	3	8	41	1.50
6688255--6688303	21	2.3	21	85	0	62	46	10	6	36	1.63
6688234--6688365	42	3.1	41	71	9	106	46	12	7	32	1.70
6688757--6688843	21	4.1	22	79	8	83	41	14	11	32	1.82
6689219--6689283	32	2.0	33	84	3	87	50	15	6	27	1.67
6689251--6689376	21	6.0	20	77	12	119	48	15	4	31	1.65
6689251--6689375	63	2.0	63	83	10	157	48	15	4	32	1.66
6689342--6689388	21	2.2	21	84	0	58	53	6	8	31	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6689787--6689918	42	3.1	41	80	5	149	47	9	7	35	1.64
6689772--6689918	63	2.3	64	80	6	165	47	9	7	35	1.64
6689771--6689918	21	7.0	21	76	8	120	47	9	7	35	1.64
6689901--6689935	16	2.1	17	89	5	54	60	8	0	31	1.27
6689892--6689944	27	2.0	26	88	3	79	54	9	0	35	1.33
6688357--6690956	538	5.0	528	82	5	2981	46	9	8	35	1.66
6690275--6690314	21	1.9	21	85	10	55	50	12	7	30	1.68
6690310--6690411	21	4.8	21	71	9	73	49	10	7	32	1.67
6690274--6690430	10	14.9	10	64	18	52	47	11	7	33	1.66
6690337--6690431	42	2.3	42	83	5	120	43	12	8	35	1.73
6690334--6690431	21	4.7	20	80	8	106	44	12	8	34	1.71
6690867--6690940	21	3.5	21	87	3	87	44	9	10	35	1.72
6690310--6691947	502	3.3	496	79	8	1693	47	9	7	34	1.65
6691302--6691380	21	3.7	21	76	14	72	51	8	8	30	1.63
6691327--6691400	21	3.5	21	83	7	80	47	10	8	33	1.68
6691755--6691828	31	2.4	33	82	10	86	45	10	6	36	1.66
6691843--6691931	21	4.2	21	83	0	97	49	11	6	32	1.65
6692337--6692454	21	5.6	21	71	7	87	47	10	8	33	1.68
6692337--6692450	42	2.7	42	80	8	126	46	9	8	35	1.68
6692814--6692917	22	4.8	22	69	19	67	54	6	1	36	1.38
6692814--6692912	11	9.4	10	70	17	58	53	7	2	37	1.40
6693980--6694016	19	1.9	19	88	0	56	48	2	10	37	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6694354--6694535	62	2.9	62	73	10	165	42	10	10	36	1.74
6696352--6696561	115	1.8	114	90	5	343	34	7	25	32	1.83
6699470--6699495	1	26.0	1	100	0	52	0	0	0	100	0.00
6701653--6701712	31	1.9	31	89	0	93	28	20	23	28	1.99
6702133--6702157	1	25.0	1	100	0	50	0	0	0	100	0.00
6702267--6702720	57	7.7	57	83	10	558	43	8	14	33	1.75
6702264--6702720	114	3.9	117	88	7	619	43	8	14	33	1.75
6706537--6706600	20	3.3	18	78	10	56	82	0	12	4	0.81
6706555--6706603	9	5.2	9	85	9	71	85	0	12	2	0.68
6706554--6706600	10	4.8	10	84	5	69	87	0	10	2	0.63
6706554--6706619	19	3.2	20	87	10	80	81	0	15	3	0.80
6706562--6706628	30	2.3	31	84	7	86	79	0	16	4	0.90
6706554--6706619	10	6.4	10	80	13	62	81	0	15	3	0.80
6707848--6708466	41	15.0	41	86	8	807	22	17	21	37	1.94
6707848--6708466	83	7.5	80	87	8	850	22	17	21	37	1.94
6708473--6708534	23	2.7	23	95	5	108	93	6	0	0	0.35
6708473--6708542	33	2.1	33	94	0	122	91	8	0	0	0.42
6708474--6708542	10	6.6	10	83	9	84	91	8	0	0	0.43
6708473--6708542	8	8.2	9	87	9	87	91	8	0	0	0.42
6708473--6708534	1	62.0	1	86	0	88	93	6	0	0	0.35
6708740--6708788	16	2.7	19	78	15	59	32	0	6	61	1.21
6708770--6708915	63	2.3	62	82	14	158	27	2	4	65	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6709928--6710326	116	3.4	117	88	4	554	44	7	14	33	1.74
6709929--6710326	59	6.7	57	82	10	462	44	7	14	33	1.74
6715067--6715091	11	2.3	11	100	0	50	48	8	16	28	1.74
6725165--6725199	3	11.7	3	100	0	70	31	0	0	68	0.90
6725340--6725429	30	3.0	30	85	0	117	40	6	1	52	1.35
6725347--6725441	30	3.2	30	79	8	104	40	6	2	51	1.39
6725939--6725965	1	27.0	1	100	0	54	0	0	0	100	0.00
6729974--6730012	19	2.1	19	90	0	60	15	0	12	71	1.14
6731136--6731175	3	13.3	3	100	0	80	67	0	0	32	0.91
6733879--6733909	2	15.5	2	93	0	53	48	0	0	51	1.00
6741805--6741836	3	10.7	3	100	0	64	31	0	0	68	0.90
6741976--6742065	30	3.0	30	85	0	117	40	6	1	52	1.35
6741983--6742077	30	3.2	30	79	8	104	40	6	2	51	1.39
6742575--6742599	1	25.0	1	100	0	50	0	0	0	100	0.00
6746631--6746669	19	2.1	19	90	0	60	15	0	12	71	1.14
6747794--6747818	3	8.3	3	100	0	50	68	0	0	32	0.90
6754194--6754227	17	2.0	17	88	11	52	70	0	2	26	1.01
6755412--6755454	17	2.5	17	76	0	50	4	11	4	79	1.04
6755449--6755507	3	20.0	3	89	10	95	30	0	1	67	1.00
6756607--6756660	10	5.6	10	72	16	51	11	3	1	83	0.85
6756601--6756674	27	2.7	27	83	8	87	13	5	1	79	0.96
6756610--6756675	17	3.9	17	82	11	66	13	4	1	80	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6756585--6756677	36	2.6	35	77	19	84	16	5	1	77	1.01
6756590--6756676	17	5.6	16	75	13	65	13	5	1	79	0.97
6756700--6757034	58	5.7	58	84	4	442	44	6	13	35	1.71
6756684--6757034	118	3.0	118	90	2	519	44	7	12	35	1.71
6762190--6762599	41	10.1	41	95	3	701	22	16	23	37	1.94
6762190--6762599	162	2.5	161	93	5	693	22	16	23	37	1.94
6762615--6762644	15	1.9	16	93	6	53	86	13	0	0	0.57
6762872--6762904	16	2.1	16	88	11	50	27	0	3	69	1.03
6762869--6762921	28	1.9	27	85	11	72	26	1	3	67	1.17
6762874--6763004	70	1.9	66	82	11	158	27	2	6	64	1.29
6763574--6763611	20	1.9	20	88	0	58	23	31	13	31	1.93
6763844--6763868	5	5.0	5	100	0	50	20	40	40	0	1.52
6763875--6764013	21	7.1	18	70	21	77	17	2	2	76	1.00
6763886--6764023	5	27.0	5	67	19	54	18	2	2	76	1.02
6763942--6764028	41	2.1	42	85	10	117	18	5	0	75	0.99
6764039--6764430	58	6.9	56	84	9	510	44	8	12	34	1.72
6764039--6764430	175	2.3	167	85	8	533	44	8	12	34	1.72
6766340--6766467	35	3.6	35	83	9	143	22	2	30	44	1.65
6766467--6766508	21	2.0	21	86	9	59	28	4	19	47	1.69
6766483--6766550	28	2.5	27	78	9	84	22	1	26	50	1.58
6766561--6766637	36	2.1	36	87	0	109	16	0	23	59	1.37
6766578--6766625	15	3.3	14	77	8	51	16	0	22	60	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6766512--6766631	59	2.0	59	81	9	138	18	0	25	55	1.49
6766570--6766638	36	1.9	36	93	0	120	15	0	23	60	1.35
6766879--6766949	21	3.3	21	73	21	58	26	2	5	64	1.29
6768441--6768564	37	3.4	37	76	4	117	44	18	20	16	1.87
6768608--6768808	87	2.3	88	79	1	199	46	16	15	21	1.84
6768695--6768895	110	1.8	110	82	5	264	46	14	17	21	1.84
6769141--6769205	33	2.0	33	87	6	96	29	13	23	33	1.93
6769337--6769608	32	8.4	33	73	12	174	33	15	18	32	1.92
6769332--6769515	65	2.8	65	82	4	228	34	14	19	31	1.91
6769539--6769620	32	2.6	32	86	0	119	29	17	19	34	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105