genome.fa.s135.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  52  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9960052--9960091	20	2.0	20	100	0	80	30	20	10	40	1.85
9960566--9961667	354	3.1	354	84	5	1386	37	15	11	34	1.85
9969993--9970034	22	2.0	21	95	4	75	64	0	0	35	0.94
9970035--9970061	9	3.0	9	100	0	54	33	0	0	66	0.92
9970327--9970380	14	4.0	14	76	9	58	77	3	5	12	1.07
9970326--9970380	20	2.8	20	75	10	58	78	3	5	12	1.06
9978956--9979012	25	2.3	24	82	11	71	54	0	0	45	0.99
9979035--9979099	29	2.2	29	75	2	67	46	1	0	52	1.10
9984546--9984752	107	2.0	105	83	7	267	39	10	10	40	1.73
9993373--9993416	18	2.4	18	85	7	54	70	2	2	25	1.10
9994026--9994059	15	2.3	15	94	0	59	14	8	0	76	1.01
9994154--9994199	19	2.4	18	86	10	65	21	4	6	67	1.32
9994165--9994205	19	2.2	19	90	0	64	24	2	4	68	1.22
9994778--9994807	14	2.1	15	93	6	53	83	0	10	6	0.81
9998276--9998318	20	2.2	20	86	0	59	46	4	16	32	1.67
10001461--10001596	54	2.6	54	85	4	170	36	13	8	41	1.75
10003709--10003753	23	2.0	23	100	0	90	35	4	20	40	1.72
10006328--10006401	37	2.0	37	92	5	123	43	6	18	31	1.76
10023671--10023715	21	2.2	20	92	7	74	53	0	0	46	1.00
10023733--10023758	11	2.4	11	100	0	52	73	0	0	26	0.84
10028921--10029008	30	3.0	30	71	15	94	40	22	10	26	1.86
10028902--10028991	30	3.1	28	74	12	85	40	25	10	24	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10032873--10033119	133	1.9	134	86	5	358	37	21	6	35	1.79
10035717--10035756	18	2.2	18	100	0	80	42	27	5	25	1.75
10038859--10038886	3	9.3	3	100	0	56	35	0	0	64	0.94
10040118--10040162	2	23.5	2	84	8	58	48	0	2	48	1.13
10040644--10040699	16	3.4	16	80	11	60	33	16	12	37	1.86
10045511--10045843	160	2.1	160	80	5	377	28	15	12	43	1.83
10046133--10046168	15	2.4	15	90	0	54	63	11	8	16	1.49
10046425--10046494	36	1.9	36	83	11	90	37	2	2	57	1.29
10046485--10046522	18	2.2	18	86	13	53	36	0	5	57	1.21
10049683--10049718	13	2.8	12	91	8	54	55	0	0	44	0.99
10052481--10052516	18	2.0	18	88	0	54	55	0	0	44	0.99
10056691--10056734	18	2.4	18	96	0	79	13	13	29	43	1.83
10068607--10068653	22	2.1	22	96	0	85	34	2	10	53	1.48
10071116--10071142	12	2.2	12	100	0	54	40	22	11	25	1.87
10078988--10079029	16	2.4	17	80	19	50	45	14	0	40	1.45
10082013--10082067	25	2.1	27	83	6	69	50	9	23	16	1.73
10082229--10082264	18	1.9	19	94	5	65	8	0	13	77	0.98
10082332--10082362	6	5.0	6	92	7	53	83	0	0	16	0.64
10082330--10082361	13	2.5	13	100	0	64	84	0	0	15	0.63
10083122--10083169	25	1.9	25	87	8	71	58	0	4	37	1.18
10084338--10084468	66	2.0	63	84	7	165	28	16	12	42	1.84
10084833--10084877	15	3.1	14	84	12	56	13	0	2	84	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10084833--10084877	22	2.0	22	87	8	65	13	0	2	84	0.72
10097355--10097395	21	2.0	21	85	4	57	48	0	2	48	1.14
10097956--10098015	12	5.1	11	75	15	57	83	0	11	5	0.80
10099260--10099875	40	15.0	40	90	6	884	23	18	21	37	1.94
10099260--10099875	42	15.0	42	90	6	907	23	18	21	37	1.94
10099260--10099875	123	5.0	123	93	4	982	23	18	21	37	1.94
10099883--10099949	7	9.9	7	84	11	86	88	10	0	1	0.59
10099882--10099941	1	60.0	1	79	0	66	90	8	0	1	0.53
10100148--10100196	16	2.7	19	78	15	59	32	0	6	61	1.21
10100250--10100289	14	2.4	18	80	19	52	17	5	2	75	1.10
10100692--10100780	31	2.9	31	81	9	94	31	19	19	30	1.96
10100846--10100883	20	1.9	20	94	0	67	31	26	18	23	1.97
10101207--10101259	19	2.7	19	79	2	61	7	5	5	81	1.00
10101351--10101439	27	3.2	27	62	20	65	41	6	14	37	1.72
10101338--10101743	121	3.4	117	89	6	595	44	8	13	33	1.74
10101343--10101743	178	2.2	180	88	5	591	44	8	13	33	1.74
10104040--10104128	38	2.3	40	77	14	96	48	8	7	34	1.64
10104268--10104304	19	1.9	19	89	10	58	54	8	0	37	1.30
10105569--10105601	16	2.1	16	88	5	50	57	0	3	39	1.14
10107378--10107416	19	2.0	20	90	5	62	17	0	30	51	1.46
10107451--10107475	7	3.6	7	100	0	50	24	0	28	48	1.52
10107426--10107475	26	1.9	26	83	0	64	18	2	32	48	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10109888--10110062	49	3.6	49	75	11	164	42	11	17	28	1.83
10109883--10110061	97	1.8	98	84	8	249	41	12	17	28	1.85
10110023--10110232	49	4.2	49	78	9	208	43	11	13	30	1.80
10110074--10110295	101	2.2	101	85	0	282	41	10	12	35	1.77
10110275--10110331	17	3.2	18	77	7	62	52	10	15	21	1.72
10110376--10110493	47	2.4	47	79	9	139	41	11	16	30	1.83
10121444--10121511	27	2.6	25	84	11	91	16	1	5	76	1.05
10121444--10121511	26	2.6	27	86	9	95	16	1	5	76	1.05
10122042--10122152	25	4.6	25	77	13	115	54	9	9	26	1.62
10122091--10122134	21	2.0	21	86	4	61	56	9	11	22	1.62
10122236--10122280	17	2.8	16	83	6	54	24	4	2	68	1.19
10123260--10123336	7	11.6	7	79	10	81	15	1	37	45	1.55
10123260--10123332	13	5.5	13	80	8	85	16	1	38	43	1.56
10123231--10123336	20	5.5	20	76	9	105	15	1	37	45	1.57
10123484--10123539	7	8.0	7	85	0	58	23	0	32	44	1.53
10123464--10123539	14	5.6	13	80	7	55	21	0	31	47	1.51
10123464--10123625	21	8.1	20	71	12	93	20	2	30	46	1.64
10123513--10123613	14	7.5	14	72	8	68	18	3	32	44	1.68
10132336--10132368	17	1.9	17	93	0	57	36	15	15	33	1.88
10132772--10133029	22	11.5	22	68	10	112	46	16	5	31	1.70
10132758--10133029	45	6.0	45	74	9	207	45	16	5	31	1.70
10134441--10134476	18	1.9	19	88	5	56	22	13	13	50	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10134496--10134540	8	5.6	8	79	10	56	8	20	0	71	1.12
10134496--10134549	16	3.3	16	82	7	65	7	20	0	72	1.08
10134507--10134551	23	1.9	24	90	4	74	6	22	0	71	1.09
10134522--10134560	20	2.0	20	85	5	53	5	23	2	69	1.21
10135359--10135387	14	2.0	15	93	6	51	48	13	6	31	1.69
10136272--10136346	20	3.8	20	85	3	98	41	9	17	32	1.81
10136404--10136443	21	1.9	21	94	0	71	62	12	7	17	1.52
10137527--10137747	102	2.2	101	84	2	273	38	8	8	44	1.65
10138375--10138406	15	2.1	15	100	0	64	75	6	0	18	1.01
10138375--10138412	15	2.7	14	92	8	60	73	5	0	21	1.02
10141664--10141741	21	3.7	21	89	0	66	29	38	17	14	1.89
10143630--10143669	19	2.0	20	85	4	55	67	0	22	10	1.20
10144909--10145225	131	2.4	134	81	4	354	29	11	19	40	1.85
10145826--10145878	21	2.5	21	78	0	61	13	28	16	41	1.86
10153497--10153825	172	1.9	173	80	5	389	38	13	12	36	1.82
10154792--10155121	80	4.1	80	85	3	398	24	9	23	42	1.83
10154792--10155121	160	2.1	160	87	3	468	24	9	23	42	1.83
10164563--10164623	25	2.5	22	78	19	59	11	9	1	77	1.07
10165580--10165682	32	3.2	32	63	15	86	41	11	5	40	1.65
10165574--10165702	64	2.0	64	100	0	258	38	10	6	44	1.65
10165978--10166025	13	3.7	13	83	8	62	0	16	0	83	0.65
10165980--10166032	18	2.9	18	78	13	56	0	16	1	81	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10165983--10166024	15	2.9	15	86	10	61	0	19	0	80	0.70
10165980--10166025	23	2.1	21	88	8	65	0	17	0	82	0.67
10165978--10166033	13	4.4	12	81	16	60	0	16	1	82	0.76
10167323--10167365	21	2.1	20	82	4	50	32	11	11	44	1.77
10176689--10176753	34	1.9	33	84	3	85	43	16	13	26	1.86
10177145--10177175	15	2.1	15	100	0	62	32	16	25	25	1.96
10185999--10186036	16	2.4	16	87	12	53	18	5	0	76	0.97
10188025--10188060	18	2.0	18	88	0	54	27	30	8	33	1.86
10189433--10189473	15	2.8	15	79	17	50	73	0	2	24	0.96
10195299--10195558	137	1.9	136	89	5	409	26	13	17	42	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105