genome.fa.s135.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  20  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4224181--4224250	29	2.4	28	77	15	79	54	5	4	35	1.44
4225220--4225248	1	29.0	1	100	0	58	0	0	0	100	0.00
4225383--4225442	15	3.9	15	76	12	59	30	1	5	63	1.25
4225393--4225464	33	2.3	30	81	13	83	31	2	4	61	1.29
4226417--4226441	13	1.9	13	100	0	50	56	12	8	24	1.62
4230695--4230750	27	2.1	27	83	3	69	53	0	1	44	1.11
4230719--4230757	18	2.1	19	85	4	53	66	2	0	30	1.05
4234411--4234437	2	13.5	2	100	0	54	51	0	0	48	1.00
4238477--4238519	22	2.0	21	86	8	61	37	9	6	46	1.63
4238448--4238617	80	2.1	81	85	3	236	43	11	2	41	1.56
4238650--4238677	2	14.0	2	100	0	56	50	0	0	50	1.00
4239232--4239269	18	2.1	18	90	9	60	13	5	2	78	1.02
4239883--4239935	24	2.2	24	80	6	63	26	7	1	64	1.31
4241445--4241518	30	2.5	30	88	0	112	41	4	16	37	1.67
4249522--4249556	17	2.1	17	89	5	54	65	0	5	28	1.15
4253625--4253649	6	4.2	6	100	0	50	84	0	0	16	0.63
4254585--4254618	2	17.0	2	100	0	68	50	0	0	50	1.00
4254713--4254836	59	2.1	59	83	0	149	46	3	8	41	1.51
4254731--4254868	59	2.3	58	81	3	168	45	6	10	37	1.64
4258965--4259017	25	2.1	25	85	0	70	77	0	15	7	0.98
4260208--4260421	34	6.2	34	73	8	128	30	17	12	39	1.86
4260234--4260418	69	2.7	69	76	1	174	31	17	11	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4260408--4260446	17	2.3	17	90	0	60	25	17	10	46	1.80
4260391--4260452	17	3.6	17	77	0	52	30	16	12	40	1.86
4260346--4260461	51	2.2	52	80	1	135	33	14	11	40	1.82
4260682--4260882	85	2.4	81	78	8	208	20	20	13	44	1.86
4260745--4261389	86	7.7	85	77	8	468	21	17	15	45	1.85
4260694--4261188	170	2.9	170	81	4	518	21	19	14	45	1.85
4260741--4261230	256	1.9	255	81	5	596	21	18	15	45	1.86
4261326--4261461	70	1.9	70	85	5	186	21	17	16	44	1.86
4261391--4261653	86	3.1	85	80	5	296	21	19	15	42	1.88
4263076--4263231	59	2.7	60	84	6	203	47	8	9	34	1.66
4265076--4265115	20	2.0	21	90	5	64	52	2	0	45	1.14
4267040--4267078	20	1.9	20	84	5	51	38	0	2	58	1.12
4267180--4267219	2	20.0	2	100	0	80	50	0	0	50	1.00
4268633--4268678	11	4.3	11	83	10	51	58	0	0	41	0.98
4268644--4268683	13	3.2	13	82	13	57	62	0	0	37	0.95
4269205--4269252	25	2.0	24	84	12	62	60	4	4	31	1.35
4270309--4270359	25	2.1	24	82	10	59	60	5	1	31	1.31
4270387--4270470	24	3.5	24	77	7	82	59	3	0	36	1.15
4270387--4270470	23	3.6	23	74	16	66	59	3	0	36	1.15
4270386--4270476	11	7.8	11	70	18	60	58	3	0	38	1.15
4274879--4274909	16	1.9	16	93	0	53	67	0	0	32	0.91
4274985--4275012	13	2.2	13	100	0	56	35	14	0	50	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4281320--4283198	969	2.0	942	85	5	2569	31	13	9	45	1.75
4284934--4284982	25	1.9	25	84	12	64	57	8	6	28	1.52
4289419--4289500	30	2.8	29	83	3	101	56	0	1	42	1.07
4289427--4289470	19	2.4	18	85	7	61	54	0	0	45	0.99
4289440--4289477	18	2.1	19	85	5	51	60	0	0	39	0.97
4289495--4289530	19	1.9	18	88	5	54	50	0	0	50	1.00
4289575--4289644	29	2.4	29	83	2	79	48	2	1	47	1.25
4291729--4291763	18	2.0	17	88	5	52	40	2	11	45	1.55
4298953--4299069	55	2.1	56	82	1	137	36	4	2	56	1.33
4299272--4299327	29	2.0	28	85	3	76	28	5	12	53	1.60
4299506--4299564	29	2.1	28	84	9	75	45	0	0	54	0.99
4300908--4300940	16	2.2	16	89	10	52	63	0	0	36	0.95
4302087--4302112	2	13.0	2	100	0	52	50	0	0	50	1.00
4302748--4302798	22	2.3	22	93	0	93	19	33	3	43	1.70
4304330--4304365	18	2.0	18	88	0	54	11	27	2	58	1.46
4305715--4305773	30	2.0	30	96	0	109	52	10	5	32	1.57
4306813--4306892	20	3.9	20	70	16	74	52	2	0	45	1.14
4307790--4307827	19	2.1	19	90	5	60	39	2	0	57	1.12
4307980--4308008	14	2.0	15	93	6	51	68	0	0	31	0.89
4314764--4314789	13	2.0	13	100	0	52	53	0	46	0	1.00
4315484--4315526	21	2.0	21	82	8	52	62	2	2	32	1.20
4315630--4315689	30	2.0	30	96	0	111	41	6	18	33	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4315939--4315992	9	5.6	10	80	20	62	62	9	0	27	1.25
4316367--4316428	10	6.3	9	80	17	54	62	6	0	30	1.20
4316545--4316608	21	3.1	21	72	2	58	20	7	4	67	1.35
4316682--4316720	10	3.6	10	83	16	51	38	0	0	61	0.96
4316904--4316968	25	2.5	26	77	5	78	26	7	1	64	1.29
4316928--4316970	18	2.4	18	88	7	61	25	6	2	65	1.30
4316928--4316972	17	2.5	18	82	10	56	26	6	2	64	1.30
4318619--4318659	13	3.1	13	86	6	55	31	7	12	48	1.68
4318614--4318657	14	3.2	14	87	3	63	29	6	9	54	1.58
4320500--4320542	23	1.9	22	85	4	59	58	2	6	32	1.38
4323030--4323201	59	2.9	58	80	3	175	50	5	8	36	1.55
4323256--4323297	13	3.1	13	86	10	57	64	0	7	28	1.20
4323259--4323297	14	2.8	14	84	0	51	69	0	5	25	1.09
4326134--4326163	4	7.8	4	92	7	53	76	0	0	23	0.78
4326202--4326255	19	2.8	19	83	5	65	46	1	0	51	1.11
4326571--4326610	21	1.9	21	89	0	62	52	7	2	37	1.43
4340638--4340694	16	3.5	15	76	9	51	19	7	28	45	1.76
4342218--4342272	29	2.0	28	86	10	78	1	1	12	83	0.80
4348846--4349708	51	17.5	48	78	10	505	28	11	22	38	1.89
4348845--4349724	101	8.9	96	78	8	604	28	11	22	38	1.89
4348843--4349684	246	3.4	246	81	7	884	28	11	22	37	1.89
4349558--4349760	46	4.4	46	84	5	189	26	11	20	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4349959--4350022	18	3.5	18	83	8	58	3	15	1	79	0.93
4349978--4350031	19	3.1	18	86	7	67	0	20	1	77	0.86
4351256--4351306	19	2.6	20	78	12	61	68	0	1	29	1.00
4352848--4352874	11	2.5	11	100	0	54	51	18	0	29	1.46
4352874--4352989	36	3.2	36	65	18	103	33	14	9	42	1.78
4352859--4353006	74	2.0	74	98	0	287	35	15	9	39	1.80
4353148--4353172	12	2.1	12	100	0	50	56	0	0	44	0.99
4353394--4353478	2	41.5	2	78	9	64	45	12	0	41	1.42
4356695--4356737	3	14.0	3	81	13	52	30	0	2	67	1.03
4359018--4359068	24	2.2	24	86	10	72	35	0	1	62	1.06
4359517--4359586	29	2.4	29	85	4	97	52	0	2	44	1.15
4361287--4361437	61	2.5	62	78	3	153	41	13	13	31	1.83
4361408--4361575	63	2.7	62	79	6	169	35	13	13	38	1.84
4365345--4365413	35	1.9	37	82	5	88	71	4	20	4	1.21
4369652--4369753	15	7.1	15	70	19	65	66	5	4	22	1.33
4371430--4371467	20	1.9	20	88	0	58	52	10	0	36	1.36
4372157--4372248	45	2.0	45	87	0	130	19	23	18	38	1.93
4374235--4374275	16	2.5	16	84	15	57	0	24	0	75	0.80
4375102--4375173	32	2.2	33	80	5	83	34	16	11	37	1.84
4382739--4382787	2	24.5	2	100	0	98	51	0	48	0	1.00
4388491--4388537	23	2.0	24	87	4	69	46	2	8	42	1.46
4388497--4388544	23	2.0	23	84	4	60	50	4	6	39	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4389041--4389501	59	7.7	57	87	7	586	34	13	7	44	1.72
4389161--4389251	27	3.2	27	65	17	76	37	15	4	42	1.67
4389041--4389514	117	4.0	119	87	6	626	33	13	7	45	1.71
4389041--4389502	176	2.6	176	88	7	623	33	13	7	45	1.72
4389581--4389648	7	9.3	7	82	9	66	82	2	1	13	0.86
4389960--4390005	20	2.3	20	85	3	67	23	19	28	28	1.98
4390058--4390127	31	2.3	31	82	12	90	25	24	22	27	2.00
4390779--4390826	23	2.1	22	84	3	60	45	6	8	39	1.59
4391862--4391896	3	11.7	3	100	0	70	31	0	0	68	0.90
4395648--4395716	21	3.3	20	69	15	50	13	0	11	75	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105