genome.fa.s135.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  47  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9068864--9068905	21	2.0	21	90	4	68	57	0	0	42	0.99
9068863--9068911	18	2.5	20	84	15	68	53	0	0	46	1.00
9069430--9069491	13	4.7	13	73	11	54	38	1	1	58	1.18
9069473--9069508	18	2.1	17	89	5	54	47	2	0	50	1.15
9069457--9069508	16	3.2	16	76	15	52	46	1	0	51	1.12
9073740--9073797	30	1.9	30	82	6	73	56	1	1	39	1.19
9075712--9075757	19	2.4	19	88	3	65	23	13	17	45	1.83
9075996--9076077	5	15.6	5	80	9	58	2	2	15	79	0.95
9076203--9076352	40	3.7	40	83	5	212	37	18	17	27	1.93
9077732--9077770	18	2.2	18	95	0	69	28	0	10	61	1.28
9077826--9077920	30	3.4	28	77	18	92	70	6	3	20	1.23
9077855--9077919	6	10.8	6	73	12	53	73	4	3	18	1.13
9077876--9077926	12	4.2	12	89	2	66	76	3	1	17	1.03
9077880--9077926	24	2.0	24	91	0	76	76	4	2	17	1.04
9077876--9077919	6	7.2	6	80	14	54	77	4	0	18	0.94
9078723--9078860	3	48.0	3	81	13	157	60	2	2	35	1.21
9078723--9078876	24	7.0	21	81	9	134	59	3	1	35	1.25
9079611--9079769	64	2.5	65	82	1	194	35	11	19	32	1.88
9080770--9080819	20	2.4	22	83	12	61	2	10	4	84	0.84
9080776--9080818	16	2.7	16	88	0	59	2	9	4	83	0.87
9081142--9081271	51	2.5	51	88	3	179	14	16	12	56	1.67
9085044--9085074	15	2.0	16	93	6	55	29	0	0	70	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9085988--9086027	3	13.3	3	83	0	53	60	0	5	35	1.19
9087704--9087746	19	2.2	19	84	12	52	6	13	6	72	1.27
9087752--9087793	20	2.2	19	80	20	52	9	19	0	71	1.13
9088266--9088351	17	4.7	17	75	21	68	9	11	1	77	1.04
9091226--9091265	21	2.0	20	85	14	55	37	10	20	32	1.85
9091731--9091768	20	1.9	20	88	0	58	0	2	18	78	0.86
9093381--9093442	18	3.5	18	64	27	51	51	8	16	24	1.71
9093553--9093616	33	1.9	33	93	0	110	15	6	37	40	1.73
9093586--9093653	20	3.5	20	82	8	86	19	1	30	48	1.58
9093586--9093662	39	2.0	40	87	7	113	19	1	32	46	1.58
9093603--9093666	13	4.9	13	71	17	53	17	0	32	50	1.46
9093577--9093666	19	4.6	19	74	9	67	16	2	34	46	1.60
9100869--9100925	28	2.0	28	96	0	105	47	19	15	17	1.83
9103130--9103155	12	2.2	12	100	0	52	30	0	0	69	0.89
9109989--9110027	18	2.2	18	90	0	60	30	0	0	69	0.89
9110206--9110262	28	2.0	28	89	0	87	50	1	1	45	1.22
9115308--9115384	26	2.8	26	79	18	70	54	1	2	41	1.22
9115320--9115383	26	2.5	26	82	12	71	56	1	1	40	1.18
9115777--9115811	12	2.9	12	86	0	52	25	11	2	60	1.45
9118143--9118179	2	18.5	2	94	0	65	48	0	0	51	1.00
9123169--9123206	6	6.0	6	90	9	58	34	0	18	47	1.49
9123828--9123862	16	2.2	16	89	0	52	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9123888--9123934	4	11.5	4	86	4	58	27	0	2	70	0.99
9123887--9123931	21	2.1	21	87	0	63	26	0	2	71	0.98
9123723--9124073	163	2.1	165	94	3	627	42	1	1	54	1.19
9123990--9124039	16	3.2	16	83	8	59	54	0	0	46	1.00
9124091--9124142	11	4.6	11	73	21	54	36	0	7	55	1.29
9127407--9128200	395	2.0	397	92	1	1335	38	10	21	28	1.87
9138126--9138201	6	12.0	6	75	18	66	46	38	0	15	1.47
9138126--9138193	19	3.6	18	82	13	75	47	36	0	16	1.47
9139892--9139938	24	2.0	24	83	8	60	78	10	8	2	1.04
9139894--9139961	30	2.2	32	84	7	86	76	10	10	2	1.12
9150481--9152446	161	12.2	162	75	8	1380	31	9	15	43	1.79
9150911--9150948	19	2.1	18	90	5	58	23	7	26	42	1.81
9150557--9152473	162	11.9	159	74	8	1190	31	9	15	42	1.79
9150555--9152395	323	5.7	322	80	5	1617	31	9	15	42	1.80
9152536--9152702	88	1.9	85	93	3	289	28	8	20	43	1.81
9161717--9161850	13	10.2	13	77	9	101	43	32	0	23	1.59
9161704--9161903	26	7.3	26	70	18	86	45	30	2	23	1.64
9161729--9161846	7	17.9	7	76	11	88	42	33	0	22	1.60
9161729--9161846	13	8.9	13	82	2	119	42	33	0	22	1.60
9161812--9161903	46	2.0	46	82	4	114	46	27	2	23	1.64
9169429--9169470	22	2.0	21	90	4	66	61	2	19	16	1.44
9169457--9169544	26	3.4	27	80	9	94	53	0	28	18	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9169701--9169739	20	2.0	20	100	0	78	38	0	35	25	1.56
9169783--9169823	11	3.7	11	90	0	64	41	0	36	21	1.54
9170849--9170893	23	2.0	23	95	0	81	11	8	17	62	1.53
9171911--9172180	64	4.3	60	73	11	188	35	12	12	39	1.82
9171976--9172432	127	3.6	125	77	6	417	38	13	12	35	1.83
9172161--9172378	65	3.4	63	71	13	169	41	12	13	32	1.82
9175251--9175374	14	9.4	14	67	18	61	46	29	0	22	1.57
9175310--9175370	32	1.9	32	93	0	104	49	31	0	19	1.49
9183779--9183820	21	2.1	19	86	8	57	64	0	23	11	1.27
9183852--9183881	15	2.1	14	93	6	51	66	0	26	6	1.16
9185093--9185139	10	4.6	10	76	12	51	25	8	17	48	1.74
9185165--9185198	18	1.9	18	88	5	52	26	11	14	47	1.79
9187536--9187677	26	5.7	25	70	14	89	30	14	14	39	1.87
9187469--9187677	98	2.1	98	99	0	409	30	15	15	38	1.89
9188072--9188100	14	2.0	15	93	6	51	44	0	20	34	1.52
9188174--9188326	40	3.8	40	82	3	189	32	16	11	39	1.84
9188581--9188659	36	2.2	36	83	2	95	36	17	15	30	1.91
9188766--9189059	50	5.9	49	83	7	340	32	11	14	40	1.83
9190465--9190534	19	3.9	17	76	12	61	45	35	2	15	1.61
9190451--9190524	19	4.1	18	77	6	69	44	32	2	20	1.65
9191390--9191431	21	1.9	23	85	9	61	45	7	7	40	1.59
9192872--9192944	38	1.9	38	100	0	146	46	8	10	34	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9200847--9200890	19	2.3	19	88	0	61	43	2	4	50	1.35
9202989--9203023	4	8.8	4	87	0	52	71	0	5	22	1.07
9214320--9214378	27	2.2	26	82	8	66	18	5	5	71	1.24
9218046--9218097	25	2.1	25	92	3	88	38	0	38	23	1.55
9218046--9218094	24	2.1	23	92	7	82	40	0	36	22	1.54
9218306--9218385	20	4.0	20	78	12	74	31	5	5	58	1.41
9218334--9218418	4	20.5	4	70	15	57	24	5	2	67	1.25
9218306--9218345	21	2.0	21	95	5	73	35	2	5	57	1.34
9218336--9218430	36	2.7	35	84	10	117	25	6	2	66	1.26
9218458--9218502	23	2.0	23	83	16	58	66	6	0	26	1.16
9218748--9218790	16	2.8	16	82	3	52	20	9	0	69	1.15
9225755--9225796	22	1.9	22	90	0	66	47	21	7	23	1.75
9225946--9226018	30	2.7	26	76	17	85	9	12	4	73	1.21
9228491--9228532	21	2.0	21	100	0	84	33	14	19	33	1.91
9230125--9230168	14	3.2	13	87	6	61	25	2	15	56	1.51
9230125--9230207	14	6.2	13	76	8	60	25	4	18	51	1.65
9230125--9230194	27	2.7	26	80	6	61	25	2	17	54	1.57
9231679--9231720	22	1.9	22	85	0	57	2	9	11	76	1.12
9233030--9233114	31	2.6	33	83	9	111	47	16	20	16	1.83
9233133--9233225	36	2.6	36	76	6	107	50	11	17	20	1.77
9233295--9233321	14	1.9	14	100	0	54	22	22	0	55	1.44
9233325--9233583	99	2.7	95	80	12	244	31	17	15	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9233325--9233639	32	9.7	32	70	11	160	31	17	16	34	1.92
9233364--9233607	96	2.5	97	80	11	257	31	16	16	34	1.92
9233472--9233703	129	1.8	128	84	3	324	32	17	15	34	1.92
9233645--9233720	34	2.2	33	77	9	80	34	17	17	31	1.93
9233645--9233772	69	1.9	68	80	8	152	32	16	16	34	1.91
9233794--9234029	97	2.5	95	81	8	264	31	14	18	36	1.91
9233942--9234028	35	2.5	35	78	10	99	34	18	13	33	1.90
9234157--9234221	33	2.0	33	87	0	94	33	13	12	40	1.82
9234320--9234397	34	2.3	34	86	6	106	26	14	16	42	1.86
9235367--9235400	18	1.9	18	88	5	52	8	17	0	73	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105