genome.fa.s135.2.7.7.80.10.50.1000.101.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  101  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18474282--18474310	8	3.6	8	100	0	58	20	0	37	41	1.53
18477587--18477620	3	11.3	3	93	0	59	0	35	2	61	1.11
18485471--18485520	18	2.8	18	81	0	64	20	16	40	24	1.91
18496346--18496374	12	2.5	12	94	5	51	48	0	6	44	1.29
18498107--18498154	23	2.1	23	84	0	60	52	0	0	47	1.00
18498395--18498437	7	5.6	7	84	13	50	79	2	0	18	0.85
18498403--18498440	16	2.3	17	86	4	51	78	0	0	21	0.74
18502637--18502672	2	18.5	2	94	5	65	52	0	0	47	1.00
18505764--18505798	7	5.0	7	100	0	70	28	42	14	14	1.84
18505755--18505798	14	3.1	14	93	0	61	29	40	13	15	1.86
18505755--18505798	21	2.1	21	91	0	70	29	40	13	15	1.86
18507683--18507737	28	2.0	28	82	7	67	38	3	1	56	1.28
18509404--18509441	14	2.9	14	81	18	55	50	0	0	50	1.00
18510645--18510678	15	2.3	15	94	0	59	47	0	0	52	1.00
18511647--18511690	21	2.0	22	82	4	54	52	0	11	36	1.38
18511933--18511973	18	2.3	18	91	0	64	46	4	7	41	1.53
18511953--18512049	47	2.1	47	88	0	140	47	1	10	41	1.44
18513472--18513516	20	2.2	21	85	14	60	60	0	33	6	1.23
18517034--18517079	13	3.8	12	88	5	58	47	2	0	50	1.13
18520234--18520282	23	2.0	24	84	7	64	40	4	8	46	1.52
18520326--18520364	13	3.0	13	80	0	51	41	0	0	58	0.98
18520318--18520398	33	2.5	33	74	20	80	39	1	2	56	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18529982--18530016	18	1.9	18	88	11	54	57	22	20	0	1.41
18534616--18534671	22	2.6	21	83	13	69	44	0	0	55	0.99
18534801--18534864	28	2.3	29	81	8	87	56	3	0	40	1.15
18535503--18535570	27	2.5	27	81	11	77	36	2	4	55	1.35
18535644--18535703	13	4.6	13	76	15	61	38	0	1	60	1.07
18535644--18535703	12	4.7	12	75	20	50	38	0	1	60	1.07
18535643--18535688	12	3.5	14	79	8	53	39	0	2	58	1.10
18535647--18535704	27	2.2	26	82	11	66	39	0	1	58	1.08
18537199--18537248	26	1.9	27	88	8	77	58	0	0	42	0.98
18539012--18539054	12	3.6	12	77	0	50	32	39	6	20	1.80
18541336--18541375	20	2.0	20	100	0	80	30	10	10	50	1.69
18541501--18541569	23	3.0	24	73	14	63	43	0	7	49	1.30
18541699--18541728	15	2.1	14	93	6	51	33	0	0	66	0.92
18541917--18541947	16	1.9	16	93	0	53	38	3	0	58	1.15
18543117--18543150	13	2.6	13	90	0	50	70	0	0	29	0.87
18543212--18543278	30	2.2	31	78	7	75	50	1	0	47	1.10
18543196--18543296	37	2.7	36	70	19	91	47	0	0	51	1.07
18544279--18544339	20	3.1	19	76	19	61	39	1	0	59	1.08
18544321--18544367	19	2.5	20	80	12	57	44	0	0	55	0.99
18544993--18545042	20	2.5	20	75	12	50	20	2	4	74	1.08
18555450--18555501	21	2.5	22	81	15	65	42	0	1	55	1.10
18555449--18555491	22	2.0	22	86	9	61	41	0	2	55	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18557212--18557247	16	2.2	17	90	5	56	19	19	11	50	1.77
18560069--18560119	26	1.9	27	84	4	68	54	3	1	39	1.30
18560079--18560124	23	2.0	23	82	0	56	52	4	4	39	1.41
18560066--18560134	26	2.5	26	79	9	66	52	4	2	40	1.36
18560184--18560341	52	3.0	52	93	1	262	44	1	5	48	1.37
18560395--18560429	12	2.8	13	91	4	54	51	0	0	48	1.00
18560404--18560474	7	10.7	7	72	15	53	50	1	1	46	1.18
18560395--18560480	27	3.1	27	75	9	77	50	2	1	46	1.21
18564616--18564650	12	2.9	12	91	0	52	51	0	2	45	1.16
18564655--18564726	34	2.2	32	82	12	83	48	1	2	47	1.25
18564768--18564819	26	2.0	27	84	3	70	53	1	0	44	1.11
18565230--18565267	16	2.4	16	91	4	60	52	0	0	47	1.00
18567682--18567711	15	2.1	15	93	6	53	56	0	0	43	0.99
18569720--18569770	22	2.2	24	86	6	70	47	0	1	50	1.12
18572171--18572218	20	2.4	20	79	10	53	39	0	2	58	1.10
18574668--18574715	4	12.5	4	83	16	50	2	2	16	79	0.93
18575173--18575200	3	9.3	3	100	0	56	32	0	35	32	1.58
18575965--18576007	10	4.0	11	85	14	54	51	0	2	46	1.13
18587037--18587108	31	2.3	31	80	4	83	54	4	0	41	1.20
18588743--18588834	18	5.2	18	71	19	70	54	0	2	43	1.12
18588753--18588985	13	18.3	13	67	24	106	53	0	3	42	1.25
18588756--18588866	18	7.0	15	64	22	57	52	0	4	43	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18588886--18588929	18	2.4	18	92	0	70	52	2	2	43	1.26
18589017--18589060	19	2.3	18	84	7	52	43	2	0	54	1.12
18589064--18589111	16	3.0	16	81	6	53	45	4	2	47	1.33
18589081--18589142	26	2.4	25	82	15	81	43	1	0	54	1.09
18589088--18589139	26	2.0	27	92	3	88	46	0	0	53	1.00
18589265--18589312	14	3.4	14	97	0	87	39	4	0	56	1.19
18599520--18599594	21	3.2	21	65	28	53	45	4	4	46	1.40
18599487--18599606	49	2.4	49	95	0	222	46	3	4	45	1.38
18599528--18599605	22	3.3	22	68	22	68	47	2	3	46	1.34
18599773--18599825	27	2.0	27	88	0	79	33	0	7	58	1.26
18600164--18600427	22	12.0	22	73	4	147	37	7	7	47	1.61
18600199--18600596	44	8.9	44	69	10	164	38	9	5	46	1.59
18600371--18600479	52	2.0	54	81	8	125	40	7	4	47	1.52
18600426--18600592	22	7.6	22	72	6	79	37	10	4	47	1.58
18600805--18600861	22	2.6	22	82	0	69	38	12	7	42	1.70
18601004--18601029	12	2.2	12	100	0	52	19	0	11	69	1.18
18601153--18601210	22	2.6	22	77	0	62	39	6	6	46	1.57
18601214--18601275	22	2.8	22	82	0	79	37	4	9	48	1.57
18601466--18601527	22	2.8	22	74	11	65	29	6	3	61	1.37
18601589--18601864	22	12.9	21	70	11	116	36	7	4	50	1.53
18601730--18601785	26	2.2	25	84	6	69	37	8	1	51	1.44
18601744--18601791	24	2.0	25	83	4	62	41	6	0	52	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18601610--18601886	44	6.4	44	71	9	140	37	8	3	49	1.52
18602016--18602077	22	2.9	21	82	2	61	40	11	1	46	1.49
18604493--18604519	13	2.1	13	100	0	54	55	0	0	44	0.99
18606913--18606937	11	2.3	11	100	0	50	44	0	16	40	1.47
18607619--18607655	17	2.2	17	90	0	56	54	0	5	40	1.24
18611113--18611166	25	2.2	25	86	6	74	37	1	5	55	1.34
18611385--18611410	2	13.0	2	100	0	52	50	0	0	50	1.00
18611713--18611803	41	2.1	43	82	6	105	47	7	8	36	1.63
18611774--18611821	22	2.2	22	84	0	60	52	4	8	35	1.51
18611834--18612038	11	18.7	11	67	9	80	54	5	3	36	1.42
18611924--18612042	44	2.7	44	76	2	114	53	5	4	36	1.42
18612070--18612272	22	9.3	22	72	11	105	49	6	8	34	1.61
18612117--18612230	43	2.6	44	80	8	117	51	6	6	35	1.52
18612117--18612251	65	2.1	64	82	8	157	51	5	5	37	1.51
18612214--18612272	21	2.7	22	76	10	59	50	5	6	37	1.51
18615569--18615599	7	4.4	7	95	0	53	19	29	25	25	1.99
18616625--18616674	16	3.1	16	80	13	66	66	2	2	30	1.14
18616597--18616662	28	2.5	26	74	13	62	60	0	4	34	1.17
18617452--18617507	19	2.8	19	80	17	69	58	0	0	41	0.98
18617539--18617586	21	2.3	22	79	13	57	47	0	0	52	1.00
18618053--18618118	28	2.3	29	77	12	75	51	1	0	46	1.10
18619812--18619864	27	2.0	27	85	7	72	50	1	3	43	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18628870--18628903	2	17.0	2	93	0	59	52	0	0	47	1.00
18632324--18632360	13	3.0	13	84	7	51	72	0	0	27	0.84
18632453--18632487	18	1.9	18	100	0	70	51	17	14	17	1.77
18638823--18638875	21	2.3	23	75	18	56	62	0	0	37	0.96
18639797--18639837	18	2.3	18	87	4	57	58	0	0	41	0.98
18646344--18646404	26	2.3	26	86	10	81	52	0	0	47	1.00
18646362--18646429	33	2.0	34	83	8	86	58	0	0	41	0.98
18646356--18646464	57	1.9	55	81	9	130	55	0	0	44	1.06
18651838--18652193	181	2.0	178	93	2	606	34	17	15	32	1.91
18660080--18660222	30	4.8	30	75	13	100	52	2	4	41	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105