genome.fa.s135.2.7.7.80.10.50.1000.28.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  28  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5606507--5606616	3	34.7	3	71	21	57	66	0	2	30	1.12
5606509--5606616	26	4.2	26	65	20	75	65	0	2	30	1.13
5606506--5606606	12	7.8	13	74	16	95	68	0	2	27	1.11
5606830--5606863	16	2.1	16	94	0	59	32	26	0	41	1.56
5608266--5608303	18	2.2	17	86	13	51	31	2	2	63	1.22
5608478--5608520	3	14.3	3	100	0	86	67	0	0	32	0.91
5608525--5608585	21	2.9	21	75	0	59	81	1	6	9	0.92
5608974--5609022	16	3.1	16	77	11	57	20	8	4	67	1.34
5616361--5616389	2	14.5	2	100	0	58	51	0	0	48	1.00
5619250--5619282	16	2.1	16	88	11	50	54	0	0	45	0.99
5619270--5619314	23	2.0	22	91	4	72	44	0	0	55	0.99
5619606--5619767	83	2.0	81	81	2	189	41	14	8	35	1.77
5619696--5619928	126	1.8	127	82	8	305	42	7	9	39	1.66
5622178--5622229	24	2.2	24	80	10	63	40	0	13	46	1.43
5626956--5627055	50	2.0	50	100	0	200	40	20	8	32	1.81
5627076--5627177	50	2.1	49	81	1	114	38	13	8	39	1.76
5627290--5627331	10	3.9	10	82	17	57	2	9	0	88	0.61
5627290--5627335	12	4.1	11	86	13	67	2	10	0	86	0.64
5627288--5627331	23	2.0	22	95	4	79	4	9	0	86	0.70
5627563--5627618	25	2.2	24	81	12	60	58	7	19	14	1.58
5632736--5632774	10	3.7	10	80	12	51	74	0	0	25	0.82
5632410--5632795	194	2.0	190	88	8	573	43	8	4	44	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5634172--5634227	28	2.0	28	89	0	85	28	10	12	48	1.74
5636603--5636632	15	2.0	15	100	0	60	26	26	13	33	1.93
5636760--5636786	2	13.5	2	100	0	54	51	0	0	48	1.00
5638767--5638805	13	2.9	13	88	3	60	71	0	5	23	1.05
5641981--5642009	15	1.9	15	100	0	58	65	0	0	34	0.93
5642701--5642905	106	1.9	106	88	0	311	35	8	9	46	1.66
5643971--5644431	153	3.0	153	96	2	845	44	4	5	45	1.45
5644801--5644896	42	2.3	42	80	10	115	50	3	1	45	1.24
5644863--5644919	29	2.0	29	89	0	87	45	3	1	49	1.29
5644864--5644930	29	2.2	29	81	7	71	49	2	1	46	1.26
5644916--5644963	24	2.0	25	83	4	62	60	0	2	37	1.09
5655868--5655893	4	6.5	4	100	0	52	23	0	0	76	0.78
5658494--5658524	3	10.3	3	100	0	62	32	0	0	67	0.91
5658607--5658633	2	13.5	2	100	0	54	51	0	0	48	1.00
5662768--5662811	21	2.0	22	82	4	54	25	36	0	38	1.56
5666178--5666233	24	2.3	23	79	8	58	41	5	1	51	1.35
5669771--5669799	2	14.5	2	100	0	58	48	0	0	51	1.00
5669882--5669909	3	9.3	3	100	0	56	67	0	0	32	0.91
5673522--5673577	29	1.9	29	100	0	112	33	17	7	41	1.77
5683435--5683510	29	2.6	29	81	4	73	50	2	2	44	1.30
5683444--5683549	34	3.1	34	74	12	81	48	0	3	47	1.26
5683474--5683571	42	2.3	41	81	8	117	45	1	3	50	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5683971--5684003	17	1.9	17	93	0	57	54	3	0	42	1.15
5683942--5684398	150	3.0	153	95	3	827	45	5	3	44	1.45
5685433--5685637	106	1.9	106	82	0	257	46	10	8	34	1.69
5686329--5686357	15	1.9	15	100	0	58	34	0	0	65	0.93
5693289--5693327	12	3.2	12	81	0	51	41	20	7	30	1.80
5699016--5699170	57	2.7	57	91	0	247	34	16	7	41	1.77
5699679--5699962	142	2.0	143	86	3	394	41	13	14	30	1.84
5700361--5700513	67	2.3	67	79	4	166	37	14	18	29	1.91
5702814--5702870	20	2.9	19	87	10	80	71	0	17	10	1.12
5702922--5702960	21	1.9	21	89	5	62	61	20	12	5	1.50
5703646--5703689	14	3.1	14	83	0	52	27	15	15	40	1.88
5704095--5704276	33	5.5	33	78	5	172	25	18	11	43	1.84
5704095--5704473	33	11.5	33	70	8	155	24	18	11	46	1.81
5704894--5704949	21	2.7	20	84	13	69	17	3	1	76	1.01
5705215--5705276	31	2.0	32	87	3	90	29	17	14	38	1.89
5712348--5712378	10	3.0	10	95	4	53	77	3	0	19	0.90
5717412--5717445	17	2.1	17	88	5	52	61	0	0	38	0.96
5721966--5721991	2	13.0	2	100	0	52	50	0	0	50	1.00
5724494--5724535	9	4.8	9	79	5	50	26	0	2	71	0.98
5724540--5724573	13	2.6	13	90	0	50	64	0	2	32	1.08
5726790--5726815	2	13.0	2	100	0	52	50	0	0	50	1.00
5727292--5727367	31	2.5	31	79	10	93	46	13	1	39	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5728870--5728913	20	2.3	19	84	4	52	27	0	9	63	1.24
5734164--5734194	2	15.5	2	100	0	62	51	0	0	48	1.00
5736847--5736881	17	2.1	17	89	5	54	42	8	0	48	1.33
5736931--5736975	9	5.3	9	76	12	51	68	0	0	31	0.89
5740324--5740380	27	2.1	28	83	3	71	43	0	1	54	1.10
5741040--5741098	32	1.9	29	86	10	82	62	3	3	30	1.28
5744426--5744457	12	2.7	12	95	0	55	40	6	3	50	1.43
5749470--5749547	29	2.7	29	96	2	140	32	7	25	34	1.84
5752562--5752599	18	2.2	17	90	4	58	47	0	0	52	1.00
5752559--5752599	17	2.3	19	91	8	68	46	0	0	53	1.00
5752588--5752648	24	2.5	25	87	10	83	55	0	0	44	0.99
5752742--5752776	15	2.2	16	90	5	54	40	8	14	37	1.76
5752857--5753258	196	2.0	197	92	0	671	31	15	16	36	1.90
5759597--5759625	15	1.9	15	100	0	58	41	10	0	48	1.37
5759994--5760028	2	17.5	2	93	0	61	45	0	2	51	1.16
5761356--5761400	20	2.3	19	85	11	56	51	17	2	28	1.58
5762946--5763029	40	2.1	41	90	2	134	51	8	19	21	1.73
5765662--5765920	132	2.0	132	91	1	421	28	14	15	40	1.87
5766337--5766663	165	2.0	163	87	3	469	30	13	17	39	1.88
5769012--5769087	39	1.9	39	89	5	118	38	21	3	36	1.72
5769886--5769928	21	2.0	21	86	0	59	53	4	2	39	1.34
5770418--5770451	17	1.9	17	88	5	50	61	5	11	20	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5786179--5786249	29	2.4	29	90	4	117	45	16	14	23	1.84
5792415--5792518	45	2.3	44	83	4	120	49	0	2	48	1.16
5792494--5792565	23	3.2	21	74	16	65	63	1	1	33	1.11
5792497--5792565	21	3.2	21	75	13	68	63	1	1	33	1.12
5792505--5792552	24	2.0	23	88	4	69	68	2	0	29	1.01
5803094--5803235	4	35.8	4	74	13	82	28	0	2	67	1.09
5803141--5803271	15	8.5	15	70	25	62	25	1	3	70	1.10
5803094--5803212	49	2.4	48	80	5	123	31	0	3	64	1.15
5803096--5803279	57	3.2	56	74	20	155	27	1	3	67	1.15
5803161--5803224	26	2.5	26	85	7	78	32	0	3	64	1.10
5803133--5803292	20	8.1	19	69	13	58	23	1	3	71	1.10
5803133--5803273	22	6.0	23	74	17	80	24	1	2	70	1.08
5803661--5803699	19	2.1	19	90	0	60	30	10	20	38	1.86
5804144--5804198	4	14.5	4	80	14	55	18	0	3	78	0.90
5804140--5804280	11	12.2	12	73	17	63	17	2	4	75	1.09
5804221--5804297	6	13.7	6	69	13	56	15	6	1	76	1.05
5804142--5804297	17	9.6	16	70	17	83	17	3	3	74	1.12
5804168--5804297	11	11.4	11	73	16	88	18	4	3	73	1.13
5804331--5804895	59	9.4	58	80	10	570	45	6	13	34	1.70
5804330--5804877	181	3.0	178	86	7	716	46	6	12	34	1.69
5815368--5815485	8	14.2	8	80	13	107	74	1	11	11	1.15
5815367--5815474	9	12.7	9	82	12	106	75	1	10	12	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5815373--5815492	61	2.0	61	82	9	147	73	1	12	12	1.18
5816493--5817004	42	12.1	41	79	8	510	22	17	24	35	1.95
5816769--5816806	19	2.0	19	94	0	67	10	18	31	39	1.85
5816727--5816915	61	3.0	61	79	11	236	21	18	25	34	1.96
5816810--5816863	26	2.1	26	100	0	108	25	20	20	33	1.97
5817011--5817061	20	2.5	20	90	6	77	86	9	0	3	0.70
5817011--5817061	14	3.9	14	76	21	56	86	9	0	3	0.70
5817310--5817402	4	22.8	4	77	18	86	27	0	2	69	0.99
5817298--5817465	37	4.3	38	76	17	150	25	2	3	68	1.20
5817266--5817389	49	2.4	50	80	11	128	29	1	4	64	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105