genome.fa.s135.2.7.7.80.10.50.1000.97.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  97  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17364224--17364485	41	6.4	41	90	0	407	37	21	16	24	1.93
17365487--17365578	8	11.6	8	81	15	95	10	11	0	77	1.00
17365501--17365579	9	8.7	9	76	18	83	11	10	0	78	0.97
17365518--17365563	10	4.4	11	78	10	60	10	8	0	80	0.91
17368860--17368898	8	4.6	8	81	12	51	33	0	5	61	1.18
17368920--17368944	13	1.9	13	100	0	50	44	0	0	56	0.99
17387626--17387703	31	2.5	31	82	0	93	42	10	12	34	1.77
17392037--17392066	10	3.1	10	95	4	53	36	0	0	63	0.95
17392039--17392068	9	3.2	9	95	4	51	36	0	0	63	0.95
17392233--17392281	25	2.0	25	84	8	64	51	2	2	44	1.24
17393643--17393915	57	4.7	58	89	3	444	33	12	8	45	1.72
17393643--17393915	115	2.4	115	97	0	510	33	12	8	45	1.72
17393953--17394087	11	12.5	10	67	16	65	78	4	2	14	1.00
17393953--17394084	5	22.8	6	68	16	50	78	4	2	15	1.02
17394006--17394063	18	3.4	17	76	6	55	70	5	1	22	1.16
17394403--17394449	19	2.4	20	85	3	60	29	19	27	23	1.98
17394450--17394497	20	2.4	20	89	0	78	6	25	33	35	1.81
17395045--17395078	3	11.3	3	87	12	52	67	0	0	32	0.91
17395045--17395083	18	2.2	18	100	0	78	66	0	0	33	0.92
17397634--17397671	19	2.0	20	89	5	60	26	10	31	31	1.90
17402789--17402825	11	3.2	12	81	11	51	64	0	0	35	0.94
17405271--17405304	15	2.3	15	94	0	59	70	0	0	29	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17405271--17405349	24	3.2	24	78	16	83	64	0	0	35	0.94
17406701--17406758	25	2.3	25	88	5	82	50	1	0	48	1.11
17408858--17408983	30	4.2	30	79	7	91	39	2	2	55	1.26
17408882--17408983	30	3.4	30	83	2	107	40	2	1	54	1.26
17417703--17417733	15	2.1	15	94	5	55	77	6	0	16	0.97
17423615--17423680	30	2.2	30	83	5	80	51	0	3	45	1.16
17423639--17423702	32	1.9	32	84	6	83	50	0	1	48	1.10
17425057--17425088	2	16.0	2	93	0	55	46	3	0	50	1.17
17428993--17429038	14	3.5	13	83	13	58	39	0	2	58	1.10
17429140--17429180	19	2.2	18	95	4	73	39	0	0	60	0.96
17431113--17431353	60	4.0	61	78	13	237	41	7	7	43	1.61
17432344--17432378	16	2.2	16	89	0	52	31	2	5	60	1.35
17434243--17434282	11	3.6	11	82	0	53	52	0	2	45	1.14
17434240--17434282	22	2.0	22	90	0	68	51	0	2	46	1.13
17434723--17434834	25	4.4	24	78	13	91	54	0	0	44	1.06
17434777--17434822	14	3.4	14	77	16	53	56	0	0	43	0.99
17434746--17434824	26	3.0	26	75	12	81	51	0	1	46	1.08
17437034--17437095	30	2.0	30	84	15	81	51	0	4	43	1.23
17437064--17437116	24	2.2	25	86	3	72	54	1	7	35	1.40
17448855--17448958	54	1.9	54	86	0	145	45	5	21	27	1.74
17451040--17451085	17	2.7	16	83	12	56	82	2	10	4	0.89
17470120--17470161	13	2.9	15	86	13	61	54	0	2	42	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17470120--17470162	16	2.9	15	86	13	63	53	0	2	44	1.13
17470208--17470259	26	2.0	27	84	3	70	51	0	3	44	1.19
17470980--17471023	22	2.1	22	83	8	56	54	0	2	43	1.12
17475011--17475049	19	2.0	20	85	5	53	25	5	15	53	1.62
17475759--17475800	17	2.5	16	88	7	57	14	9	0	76	1.02
17476311--17476382	33	2.1	34	84	2	92	55	0	0	44	0.99
17476334--17476382	19	3.1	15	81	18	55	57	0	0	42	0.99
17476344--17476380	18	2.0	19	89	5	58	51	0	0	48	1.00
17476452--17476506	23	2.3	24	82	14	62	56	5	0	38	1.23
17476777--17476838	25	2.5	25	74	7	63	33	0	3	62	1.11
17477454--17477510	30	1.9	30	92	0	96	54	7	5	33	1.50
17480215--17480250	17	2.1	17	90	10	56	11	25	30	33	1.90
17494343--17494371	13	2.1	14	93	6	51	37	6	0	55	1.27
17494419--17494462	22	2.0	22	83	16	56	43	0	4	52	1.22
17494496--17494532	19	1.9	19	89	10	58	59	2	0	37	1.12
17498585--17498623	19	2.1	19	85	9	53	2	30	2	64	1.21
17502326--17502396	24	3.2	22	69	18	58	66	0	1	32	1.01
17502816--17502843	3	9.3	3	100	0	56	32	0	0	67	0.91
17507810--17507844	16	2.1	17	89	5	54	48	0	5	45	1.26
17508157--17508217	25	2.4	26	76	13	65	50	4	0	44	1.23
17508771--17508835	27	2.4	28	77	10	73	50	1	0	47	1.10
17509619--17509665	24	2.0	24	86	0	67	40	2	2	55	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17513909--17513941	16	2.1	16	94	0	57	27	0	0	72	0.85
17522833--17522866	16	2.1	16	89	10	52	73	0	0	26	0.83
17524272--17524389	38	3.2	38	72	16	140	53	9	17	19	1.71
17524249--17524389	71	2.0	71	95	0	255	53	9	17	18	1.70
17524140--17524486	180	1.9	180	84	3	457	49	12	18	19	1.79
17524320--17526162	218	8.5	218	83	3	1839	46	12	19	21	1.83
17525616--17525799	38	5.0	36	70	9	131	46	11	20	21	1.83
17525513--17526006	36	13.6	37	65	9	151	46	13	19	20	1.82
17524320--17526179	109	17.1	109	79	4	1612	46	12	19	21	1.83
17536995--17537042	4	11.5	4	78	8	51	70	0	4	25	1.04
17539166--17539232	26	2.8	23	77	20	66	64	2	5	26	1.31
17545775--17545804	2	15.0	2	92	0	51	46	0	3	50	1.18
17552580--17552637	3	19.7	3	92	7	93	29	1	0	68	0.99
17552954--17553010	30	1.9	30	85	0	78	45	0	1	52	1.11
17552983--17553034	22	2.5	22	93	6	90	50	0	0	50	1.00
17556485--17556557	37	2.0	36	81	10	85	49	1	2	46	1.24
17560355--17560429	38	2.0	38	94	0	132	36	18	22	22	1.95
17567743--17567781	19	2.1	19	85	0	51	12	10	12	64	1.51
17569199--17569240	13	3.1	14	82	6	59	83	9	7	0	0.81
17572231--17572256	2	13.0	2	100	0	52	50	0	0	50	1.00
17580507--17580539	15	2.2	15	94	0	57	63	0	3	33	1.10
17580514--17580565	15	3.6	14	78	17	54	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17580506--17580565	26	2.2	28	82	11	72	65	0	1	33	1.03
17582408--17582549	51	2.8	52	82	4	153	28	15	5	50	1.67
17582864--17582921	27	2.1	27	80	0	62	63	0	1	34	1.04
17583123--17583168	21	2.2	21	84	7	58	41	0	4	54	1.20
17585348--17585594	125	2.0	124	87	2	352	30	12	5	51	1.63
17585629--17585704	21	3.7	20	79	8	80	40	6	1	51	1.36
17586076--17586110	16	2.1	17	89	10	54	51	0	0	48	1.00
17586210--17586279	36	1.9	36	83	11	90	50	0	1	48	1.09
17586799--17586861	33	1.9	33	96	0	117	36	25	23	14	1.93
17588822--17588854	13	2.5	14	85	14	52	57	0	0	42	0.98
17597532--17597853	160	2.0	160	99	0	635	29	13	17	39	1.88
17599425--17599501	29	2.6	29	79	4	82	40	15	16	27	1.89
17604175--17604250	38	2.0	37	85	7	100	38	0	1	60	1.05
17612478--17612524	25	2.0	23	87	8	67	42	2	0	55	1.12
17630116--17630163	18	2.7	18	86	0	78	33	25	14	27	1.94
17639534--17639577	6	7.0	6	90	10	70	36	0	63	0	0.95
17639939--17640034	30	3.2	28	82	8	111	37	3	0	59	1.13
17639959--17640036	29	2.7	28	88	6	111	42	2	0	55	1.13
17640023--17640062	18	2.2	18	90	0	62	57	2	0	40	1.12
17640056--17640130	29	2.6	29	76	8	80	56	1	0	42	1.08
17642058--17642092	2	18.0	2	94	5	63	48	0	0	51	1.00
17643746--17643786	14	3.1	14	86	6	59	4	4	17	73	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17649287--17649311	13	1.9	13	100	0	50	0	16	0	84	0.63
17651044--17651232	93	2.0	93	86	2	263	23	20	13	41	1.88
17652801--17652994	97	2.0	95	96	4	354	41	14	17	26	1.88
17655372--17655402	2	15.5	2	93	0	53	54	0	45	0	0.99
17656103--17656246	74	1.9	74	91	2	236	39	11	11	36	1.79
17657096--17657183	35	2.4	36	76	14	99	56	4	6	31	1.46
17660363--17662083	858	2.0	859	98	0	3345	42	9	10	38	1.71
17663400--17663469	22	3.2	22	72	11	63	44	5	14	35	1.69
17663400--17663492	44	2.1	44	80	4	98	44	6	10	38	1.65
17665503--17665610	43	2.5	44	79	11	125	50	6	10	33	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105