genome.fa.s135.2.7.7.80.10.50.1000.16.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  16  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3244784--3244827	22	2.0	22	90	0	70	38	11	18	31	1.86
3249069--3249104	18	2.0	18	100	0	72	33	11	22	33	1.89
3249652--3249686	17	2.1	17	89	5	54	0	28	0	71	0.86
3252145--3252185	2	20.5	2	94	0	64	43	0	4	51	1.23
3253272--3253318	23	2.1	23	84	11	62	46	21	10	21	1.81
3254541--3254606	28	2.3	29	84	7	82	42	0	1	56	1.08
3254541--3254583	14	3.1	14	76	10	52	39	0	0	60	0.97
3265512--3265564	23	2.3	23	87	6	72	35	7	9	47	1.64
3270873--3270914	22	1.9	22	90	0	66	66	9	0	23	1.21
3270971--3271037	33	2.1	30	86	8	89	55	7	0	37	1.28
3274306--3274344	10	3.8	10	89	3	51	56	0	0	43	0.99
3274291--3274365	37	2.0	37	84	2	96	53	1	2	42	1.23
3274371--3274405	16	2.4	14	90	9	52	28	0	0	71	0.86
3274602--3274626	8	3.1	8	100	0	50	52	0	0	48	1.00
3283931--3283969	17	2.2	18	90	4	62	33	0	0	66	0.92
3284749--3284819	18	3.8	19	73	17	76	47	1	1	49	1.18
3284749--3284818	6	11.3	6	74	17	63	48	1	1	48	1.19
3284756--3284816	32	1.9	31	86	3	86	50	1	1	45	1.21
3284747--3284819	25	3.0	24	78	11	85	49	1	1	47	1.18
3286657--3286703	18	2.6	19	76	10	53	68	0	10	21	1.20
3293634--3293665	3	10.7	3	100	0	64	31	0	0	68	0.90
3293867--3293891	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3294040--3294064	2	12.5	2	100	0	50	48	0	0	52	1.00
3294993--3295038	19	2.3	20	85	10	60	26	0	4	69	1.07
3295362--3295388	2	13.5	2	100	0	54	51	0	0	48	1.00
3299617--3299923	120	2.6	118	80	6	318	47	11	11	29	1.75
3299619--3299923	60	5.1	59	80	2	279	47	11	11	30	1.74
3311125--3311162	18	2.1	19	90	5	60	21	2	2	73	1.07
3311125--3311176	19	2.8	18	82	8	59	23	1	1	73	1.04
3311262--3311306	23	1.9	23	90	4	72	68	2	0	28	1.01
3311482--3311531	18	2.8	18	81	3	66	62	0	10	28	1.27
3323548--3323576	10	2.7	11	89	10	51	20	0	6	72	1.07
3323551--3323576	10	2.6	10	100	0	52	15	0	7	76	0.99
3323905--3323954	18	2.8	18	82	11	68	64	0	8	28	1.22
3326776--3326823	20	2.4	20	100	0	96	54	0	16	29	1.43
3331507--3331568	2	31.0	2	96	0	115	0	48	0	51	1.00
3341023--3341084	19	3.4	18	82	8	81	58	0	0	41	0.98
3349923--3349947	8	3.1	8	100	0	50	12	0	0	88	0.53
3350039--3350093	25	2.2	25	80	9	58	40	7	5	47	1.54
3351920--3352663	358	2.1	352	85	4	985	38	13	12	35	1.82
3367723--3367767	3	15.0	3	100	0	90	33	0	0	66	0.92
3368234--3368263	4	7.5	4	100	0	60	26	0	0	73	0.84
3369584--3369640	27	2.1	28	93	3	98	14	8	5	71	1.27
3369640--3369686	3	15.7	3	100	0	94	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3372460--3372518	30	1.9	31	89	3	93	22	0	28	49	1.50
3373146--3373228	29	2.8	29	81	5	85	46	4	0	48	1.23
3375330--3375373	16	2.8	16	86	6	63	40	0	6	52	1.28
3387502--3388059	200	2.9	195	78	8	548	36	11	12	39	1.79
3391456--3391494	20	1.9	21	89	5	62	33	20	10	35	1.86
3395990--3396021	16	2.0	16	93	0	55	31	0	9	59	1.29
3400264--3400294	2	15.5	2	100	0	62	0	51	0	48	1.00
3405750--3405922	71	2.5	71	85	2	242	45	16	9	28	1.79
3408596--3408627	2	16.0	2	100	0	64	50	0	0	50	1.00
3409894--3409924	15	2.0	16	93	6	55	12	0	22	64	1.27
3415554--3415593	21	2.0	20	85	14	55	57	20	7	15	1.61
3415905--3415953	13	3.9	13	78	7	57	51	0	4	44	1.20
3416044--3416108	20	2.9	22	80	15	71	52	0	1	46	1.10
3416044--3416108	21	2.9	22	82	15	71	52	0	1	46	1.10
3417993--3418021	10	3.0	10	95	5	51	72	0	0	27	0.85
3425456--3425524	32	2.2	32	82	10	81	50	0	1	47	1.09
3430237--3430278	20	2.1	20	90	0	66	83	4	4	7	0.91
3433754--3433829	36	2.1	34	81	11	82	43	1	0	55	1.08
3438276--3438309	1	34.0	1	100	0	68	100	0	0	0	0.00
3441423--3441453	15	2.1	15	93	0	53	67	3	0	29	1.06
3441430--3441477	18	2.6	17	79	20	53	66	2	4	27	1.21
3447598--3447671	27	2.9	27	76	13	66	77	1	4	17	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3447643--3447676	16	2.1	16	88	0	50	88	2	5	2	0.70
3447618--3447676	27	2.2	27	82	11	68	83	1	6	8	0.89
3450237--3450267	13	2.4	13	100	0	62	41	0	12	45	1.42
3450634--3450798	80	2.1	80	96	0	303	27	22	12	37	1.90
3451954--3451994	17	2.4	17	87	4	64	46	0	0	53	1.00
3451956--3452006	19	2.7	19	85	11	70	50	0	0	49	1.00
3451956--3452065	18	5.8	18	69	17	71	51	1	1	44	1.22
3452040--3452116	36	2.1	37	95	2	138	42	2	2	51	1.29
3452039--3452119	37	2.2	37	91	4	137	43	2	2	51	1.28
3452072--3452178	27	4.3	24	70	14	76	50	0	1	46	1.18
3452080--3452170	22	3.8	23	79	10	85	49	1	2	47	1.21
3452078--3452170	23	3.9	23	80	12	91	50	1	2	46	1.20
3452109--3452209	22	4.7	22	74	19	72	57	0	1	40	1.10
3452971--3453035	31	2.1	31	83	11	80	41	3	1	53	1.25
3453116--3453171	11	4.8	11	75	18	51	32	3	0	64	1.11
3458803--3458869	22	3.0	22	74	21	61	46	0	1	52	1.09
3470057--3470095	17	2.3	17	95	0	69	12	5	0	82	0.83
3470452--3470485	15	2.3	15	89	0	50	20	23	2	52	1.60
3477026--3477072	15	3.1	15	82	11	53	23	0	10	65	1.23
3477698--3477760	21	3.0	21	85	0	90	22	7	33	36	1.83
3482337--3482425	46	1.9	46	83	0	115	38	17	13	30	1.89
3484205--3484424	54	4.1	54	84	1	230	22	29	25	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3484299--3484451	54	2.8	54	85	0	153	24	27	24	23	2.00
3484249--3484445	108	1.8	108	82	2	252	22	27	24	24	2.00
3493617--3493706	30	3.0	29	80	6	99	36	13	3	46	1.60
3495081--3495130	17	2.7	19	78	12	59	68	8	0	24	1.16
3501629--3501653	6	4.2	6	100	0	50	36	16	16	32	1.90
3504801--3504843	22	2.0	22	86	9	61	60	0	0	39	0.97
3507369--3507424	29	1.9	29	92	0	94	60	1	1	35	1.17
3514477--3514517	16	2.5	17	84	7	50	36	0	2	60	1.10
3514589--3514654	22	3.1	20	79	14	62	48	6	0	45	1.27
3514619--3514647	14	2.1	14	100	0	58	41	6	0	51	1.28
3516039--3516140	45	2.3	45	94	0	177	17	16	19	46	1.85
3517146--3517178	15	2.2	15	94	0	57	12	9	27	51	1.69
3522084--3522158	37	2.0	37	94	0	132	30	9	30	29	1.88
3531042--3531087	23	2.0	23	82	0	56	30	4	26	39	1.75
3531072--3531252	15	12.0	15	66	19	56	22	0	27	49	1.54
3531169--3531244	7	9.9	7	73	18	53	22	1	25	51	1.56
3531139--3531248	46	2.4	45	74	6	103	24	0	26	48	1.57
3531169--3531253	15	5.4	17	80	9	83	21	1	27	50	1.56
3531666--3531717	12	4.3	12	77	22	56	73	0	0	26	0.84
3531672--3531717	9	5.2	9	80	10	51	73	0	0	26	0.83
3532743--3532772	15	2.0	15	93	0	51	50	0	0	50	1.00
3533120--3533205	34	2.5	34	79	7	104	44	15	22	18	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3533165--3533682	174	3.0	171	81	8	563	48	12	17	21	1.80
3534474--3534530	21	2.6	22	72	10	55	45	1	1	50	1.22
3535003--3535032	1	30.0	1	100	0	60	100	0	0	0	0.00
3536307--3536352	23	1.9	25	82	8	60	41	0	2	56	1.11
3538399--3538434	17	2.1	18	94	5	65	30	2	0	66	1.06
3538558--3538621	28	2.4	27	87	7	87	46	0	0	53	1.00
3538578--3538621	14	3.1	14	76	0	52	52	0	0	47	1.00
3538590--3538673	27	3.3	24	70	15	62	50	1	0	48	1.08
3540148--3540190	17	2.5	16	85	11	50	60	2	0	37	1.10
3549656--3549726	20	3.3	20	71	15	54	53	1	0	45	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105