genome.fa.s135.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  36  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6883550--6883605	26	2.2	26	80	6	60	46	21	8	23	1.79
6887185--6887251	30	2.2	30	78	5	73	25	19	8	46	1.79
6888092--6888123	12	2.7	12	90	0	55	15	18	15	50	1.79
6888265--6888397	69	1.9	69	98	0	257	49	2	8	39	1.45
6890918--6890950	2	16.5	2	100	0	66	51	48	0	0	1.00
6896810--6896854	20	2.2	20	84	8	54	26	0	22	51	1.49
6900011--6900386	124	3.0	124	95	0	671	25	14	7	51	1.68
6904525--6904566	19	2.2	19	95	0	75	23	26	19	30	1.98
6908391--6908458	29	2.4	30	76	13	74	50	1	1	47	1.19
6909012--6909308	125	2.4	125	79	5	323	38	15	10	35	1.82
6909247--6909361	61	1.9	61	83	13	150	43	15	9	31	1.79
6909362--6909402	21	2.0	21	95	0	73	26	2	31	39	1.70
6910326--6910402	25	3.2	24	65	10	59	31	9	5	54	1.54
6914758--6914793	15	2.4	15	90	0	54	16	8	11	63	1.49
6915070--6915213	55	2.7	55	81	2	157	45	10	13	30	1.76
6915178--6915479	159	1.9	159	86	4	430	44	10	16	28	1.82
6916029--6916086	27	2.3	24	85	11	73	44	3	0	51	1.18
6916056--6916116	21	2.7	23	85	11	83	44	6	0	49	1.28
6916022--6916115	23	4.1	23	76	15	88	43	6	0	50	1.28
6918913--6918943	4	7.8	4	100	0	62	51	0	0	48	1.00
6926882--6926929	3	16.0	3	78	8	53	29	2	37	31	1.69
6931605--6931647	18	2.3	19	80	15	54	76	0	9	13	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6933269--6933364	23	4.2	22	75	11	86	33	6	17	42	1.74
6933287--6933437	46	3.3	46	74	2	144	35	6	16	41	1.75
6933259--6933353	23	4.2	22	75	11	84	34	5	14	45	1.68
6933539--6933873	43	7.6	43	68	13	173	28	11	16	42	1.83
6933550--6933863	88	3.6	85	76	11	242	29	11	16	42	1.83
6933727--6933873	42	3.4	44	73	9	124	27	10	16	44	1.81
6933630--6933947	87	3.6	84	75	11	230	29	11	15	43	1.81
6935035--6935076	10	3.9	11	84	9	52	16	7	7	69	1.34
6935095--6935129	14	2.5	14	85	0	52	25	0	11	62	1.28
6936300--6936358	18	3.0	20	76	20	61	50	10	3	35	1.53
6936364--6936407	21	2.1	21	86	0	61	52	11	2	34	1.50
6936493--6936534	3	14.0	3	100	0	84	66	0	0	33	0.92
6936538--6936623	8	11.0	8	86	8	108	83	1	13	1	0.76
6936538--6936604	1	67.0	1	72	0	53	86	1	11	0	0.64
6938221--6938324	17	6.0	17	74	7	84	33	14	17	34	1.90
6938175--6938315	35	4.0	35	77	7	124	35	14	15	34	1.89
6938290--6938323	18	1.9	17	94	5	59	29	11	20	38	1.88
6938210--6938357	69	2.1	70	83	3	183	31	14	16	37	1.89
6938655--6938766	22	5.0	22	74	10	102	43	17	8	30	1.78
6938655--6938897	45	5.4	45	82	6	208	41	14	10	33	1.79
6938711--6938783	22	3.2	22	69	11	58	43	12	10	32	1.77
6939063--6939148	34	2.5	34	96	0	154	45	15	11	27	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6940230--6940263	10	3.5	10	92	8	61	8	8	0	82	0.85
6940230--6940262	9	3.6	9	95	4	57	9	9	0	81	0.87
6940797--6940853	29	2.0	29	89	0	87	43	7	12	36	1.69
6944901--6944955	27	2.0	28	89	3	85	54	7	3	34	1.46
6944924--6944967	21	2.1	21	95	0	79	50	9	4	36	1.55
6945091--6945130	14	2.9	15	85	10	50	75	7	2	15	1.14
6945091--6945129	15	2.6	14	84	11	51	76	7	2	12	1.09
6946112--6946145	17	1.9	18	94	5	61	64	2	2	29	1.22
6948833--6948876	22	1.9	22	82	17	54	22	34	0	43	1.54
6950028--6950054	13	2.1	13	100	0	54	70	0	7	22	1.12
6950384--6950433	23	2.2	23	85	0	64	68	0	20	12	1.21
6951109--6951161	13	3.8	14	78	9	63	28	18	13	39	1.88
6951556--6951597	21	2.0	21	90	0	66	28	4	21	45	1.72
6951624--6951762	46	3.0	46	84	0	179	38	9	14	38	1.78
6951684--6951745	24	2.7	23	73	14	56	35	3	14	46	1.61
6951984--6952109	45	2.9	44	80	5	139	27	11	15	44	1.82
6951981--6952192	87	2.4	87	78	3	208	30	10	14	44	1.80
6952161--6952247	42	2.0	43	82	6	106	25	17	19	37	1.93
6953228--6953269	19	2.3	19	87	4	59	71	0	26	2	0.98
6953451--6953484	14	2.5	13	86	9	50	26	0	11	61	1.30
6954545--6954588	20	2.1	21	95	4	81	81	18	0	0	0.68
6954548--6954588	16	2.6	16	92	3	66	82	17	0	0	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6954655--6954696	21	2.0	21	86	9	59	33	52	4	9	1.55
6955540--6955577	12	3.0	13	76	7	51	21	0	2	76	0.91
6955949--6956026	16	4.8	15	71	14	57	48	32	3	15	1.63
6955949--6956027	33	2.4	33	75	6	81	49	31	3	15	1.62
6977763--6978011	47	5.2	48	87	3	342	26	12	26	34	1.92
6977769--6978011	96	2.5	95	89	2	353	26	12	27	34	1.92
6978150--6978200	5	10.8	5	80	16	56	80	19	0	0	0.71
6978150--6978200	9	6.0	9	86	13	81	80	19	0	0	0.71
6978154--6978197	4	10.8	4	81	13	54	81	18	0	0	0.68
6978150--6978200	25	2.0	25	96	3	93	80	19	0	0	0.71
6978261--6978301	20	2.0	21	86	9	59	36	56	0	7	1.27
6978487--6978546	18	3.2	19	86	9	70	81	13	3	1	0.89
6978498--6978547	26	1.9	26	83	0	64	78	18	2	2	0.95
6979164--6979212	8	6.0	8	76	4	53	18	2	2	77	0.96
6979588--6979666	33	2.4	34	79	12	94	51	29	3	15	1.60
6979588--6979666	16	4.8	16	75	10	79	51	29	3	15	1.60
6982658--6982902	47	5.1	47	89	3	357	26	12	25	35	1.91
6982658--6982905	96	2.6	95	90	3	374	26	12	25	35	1.91
6983763--6983815	27	2.0	27	84	0	70	41	26	13	18	1.87
6984021--6984071	8	6.1	8	79	6	57	17	0	3	78	0.90
6984447--6984524	16	4.8	15	74	14	66	50	30	3	15	1.62
6984447--6984525	33	2.4	33	77	6	90	50	30	3	15	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6991164--6991227	32	2.0	32	93	0	110	42	6	9	42	1.62
6993317--6993341	13	1.9	13	100	0	50	92	0	8	0	0.40
6993318--6993349	15	2.1	15	94	0	55	90	3	6	0	0.53
7003921--7003963	21	2.0	21	100	0	86	48	9	18	23	1.76
7008435--7008506	27	2.7	27	77	12	78	59	1	4	34	1.25
7019387--7019456	33	2.1	35	94	5	126	28	22	8	40	1.84
7024680--7024721	11	3.8	11	90	0	66	19	0	30	50	1.48
7024679--7024721	22	2.0	22	95	0	77	20	0	30	48	1.50
7024756--7024902	52	2.8	52	84	4	181	39	8	26	25	1.84
7031855--7031883	4	7.2	4	100	0	58	24	0	24	51	1.48
7038147--7039387	357	3.5	356	88	1	1750	36	12	15	36	1.85
7038147--7039387	358	3.5	355	88	1	1741	36	12	15	36	1.85
7041278--7041594	159	2.0	159	92	0	526	29	12	18	39	1.88
7048515--7049287	158	4.9	156	78	5	703	44	16	8	30	1.77
7048516--7049261	315	2.4	313	83	4	836	43	16	8	31	1.78
7051032--7051179	3	51.7	3	81	11	141	37	0	2	59	1.17
7051977--7052028	5	10.2	5	79	4	59	23	5	0	71	1.07
7056860--7057148	120	2.4	119	80	4	303	19	18	15	46	1.84
7057527--7057660	3	48.7	3	73	19	78	38	0	4	57	1.19
7057541--7057656	5	21.8	5	79	8	90	40	0	4	55	1.20
7057544--7057659	8	13.8	8	73	20	76	40	0	4	55	1.20
7057979--7058020	22	1.9	22	90	9	68	19	4	26	50	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7058416--7058466	19	2.8	19	85	5	61	9	3	1	84	0.83
7062009--7062212	98	2.1	98	96	1	372	25	11	9	53	1.66
7062025--7062225	99	2.1	96	90	4	278	25	12	9	52	1.69
7062781--7062840	29	2.1	29	100	0	120	55	13	6	25	1.62
7064440--7064476	10	3.7	10	89	10	58	45	0	5	48	1.25
7064426--7064488	20	3.2	20	76	10	67	52	0	3	44	1.17
7064530--7064570	19	2.1	20	86	4	57	65	4	0	29	1.13
7064975--7065205	86	2.7	84	78	9	225	36	4	4	54	1.40
7064992--7065202	29	7.3	29	71	12	121	37	4	3	53	1.40
7065193--7065231	19	2.1	18	85	4	51	33	5	5	56	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105