genome.fa.s135.2.7.7.80.10.50.1000.70.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  70  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12475934--12475985	26	2.0	26	85	7	70	53	9	3	32	1.51
12479512--12479552	7	5.9	7	94	0	64	24	12	4	58	1.53
12484173--12484225	27	1.9	28	92	3	90	45	1	0	52	1.11
12485196--12485312	30	3.8	30	78	10	130	40	3	7	48	1.49
12487775--12487837	24	2.7	22	72	23	58	63	0	0	36	0.95
12487777--12487831	24	2.2	25	87	9	76	65	0	0	34	0.93
12488025--12488066	19	2.2	20	86	4	59	42	2	4	50	1.36
12491367--12491423	18	3.2	18	73	9	62	59	5	1	33	1.30
12496171--12496228	30	1.9	30	82	6	73	50	5	0	44	1.24
12496345--12496406	32	2.0	31	87	3	88	24	24	9	41	1.84
12509051--12509098	16	3.0	17	82	11	57	70	0	16	12	1.16
12509368--12509467	38	2.7	36	83	9	103	72	0	16	12	1.13
12509413--12509467	11	5.5	11	72	24	50	76	0	16	7	1.00
12509395--12509467	19	3.7	19	79	5	74	75	0	15	9	1.04
12510261--12510308	15	3.3	15	77	11	55	29	18	12	39	1.88
12511263--12511344	18	4.4	19	77	7	62	28	10	12	48	1.74
12511267--12511370	37	2.9	36	80	5	111	30	10	10	48	1.72
12511286--12511335	19	2.7	18	78	6	55	34	14	8	44	1.74
12511286--12511373	18	4.9	18	76	5	79	31	10	9	48	1.68
12511316--12511384	35	2.0	35	88	0	102	31	8	10	49	1.67
12511323--12511396	35	2.1	35	85	5	96	33	9	10	45	1.71
12511495--12511547	22	2.4	22	81	9	63	41	9	5	43	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12511530--12511581	23	2.4	21	75	9	50	32	9	13	44	1.76
12512031--12512078	21	2.3	21	85	3	62	58	10	10	20	1.60
12515602--12515640	4	9.8	4	88	0	51	33	0	20	46	1.51
12515933--12516003	33	2.2	33	84	5	90	29	11	21	38	1.88
12515884--12516340	134	3.4	134	80	4	501	28	13	19	38	1.90
12516940--12516988	21	2.4	20	70	6	53	20	22	12	44	1.84
12521781--12521908	64	2.0	64	95	0	229	46	17	11	25	1.81
12526181--12526433	80	3.2	79	82	2	328	22	8	27	41	1.83
12529884--12530762	305	2.9	304	82	3	1054	37	14	13	34	1.86
12532250--12532278	2	14.5	2	100	0	58	48	0	0	51	1.00
12542711--12542806	20	4.8	20	83	7	131	60	9	4	26	1.46
12542714--12542806	41	2.3	40	84	1	123	60	9	4	25	1.47
12544121--12544147	7	3.9	7	100	0	54	11	0	0	88	0.50
12544165--12544225	6	10.2	6	85	0	68	65	6	1	26	1.26
12544167--12544225	24	2.5	23	91	2	91	66	6	1	25	1.26
12544446--12544688	43	5.7	42	77	9	190	42	16	12	28	1.84
12544499--12544648	43	3.5	43	83	3	194	41	15	13	30	1.85
12544464--12544674	86	2.5	85	80	8	248	41	17	12	28	1.86
12544927--12544951	13	1.9	13	100	0	50	48	8	4	40	1.51
12545773--12545834	32	1.9	32	84	12	83	12	6	3	77	1.08
12550818--12550847	14	2.1	15	93	6	53	63	10	0	26	1.26
12550943--12551143	40	4.9	40	81	10	214	58	8	5	26	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12550956--12551154	21	9.9	21	82	8	229	58	8	5	28	1.49
12550944--12551154	61	3.5	62	83	7	254	58	9	5	27	1.50
12551735--12551908	42	4.1	42	71	14	135	51	15	7	25	1.69
12553275--12553312	12	3.2	12	85	7	51	10	2	34	52	1.50
12553295--12553372	13	5.8	13	74	4	75	17	1	33	47	1.56
12553284--12553372	7	13.7	6	74	17	72	16	2	32	48	1.59
12554919--12555319	145	2.8	143	77	7	361	41	12	13	33	1.82
12555993--12556032	20	2.0	20	100	0	80	20	20	25	35	1.96
12557123--12557258	41	3.3	41	77	0	128	44	12	13	28	1.81
12557227--12557345	41	2.9	40	68	8	96	42	13	15	28	1.85
12557326--12557435	42	2.6	42	77	1	112	43	7	16	32	1.75
12557475--12557627	41	3.7	41	75	5	139	41	16	15	26	1.88
12557663--12557767	23	4.6	23	87	0	129	42	15	14	27	1.85
12557786--12557872	41	2.1	41	82	4	104	39	17	18	25	1.92
12557958--12558029	18	4.1	18	76	5	76	41	4	13	40	1.64
12558151--12558245	17	5.4	17	69	14	57	50	9	7	32	1.62
12558792--12558841	7	7.1	7	83	0	55	50	26	4	20	1.66
12558792--12558844	21	2.5	21	84	0	61	49	26	5	18	1.70
12559928--12559988	16	3.6	17	77	16	56	8	16	1	73	1.14
12559916--12560018	35	3.0	33	72	21	86	7	16	0	74	1.09
12559944--12559996	17	3.1	17	76	13	54	11	16	0	71	1.13
12559919--12560022	7	14.9	7	69	14	54	6	16	0	75	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12567262--12567309	18	2.7	18	90	0	78	20	4	41	33	1.72
12571196--12571340	50	2.9	50	90	0	218	22	57	2	16	1.51
12571330--12571401	31	2.3	31	95	0	135	29	63	4	2	1.27
12579268--12579491	114	2.0	114	94	1	396	42	9	2	45	1.50
12579688--12579778	19	4.5	19	70	22	69	30	3	9	56	1.48
12579678--12579784	34	3.3	34	71	19	120	31	3	8	56	1.47
12579678--12579801	62	2.0	62	98	0	239	30	4	9	55	1.51
12579788--12579864	32	2.5	31	89	6	111	31	6	14	48	1.69
12583830--12583906	29	2.6	29	82	12	93	35	1	0	63	1.03
12583868--12583907	7	5.3	7	83	16	53	37	0	0	62	0.95
12583864--12583907	14	2.8	16	83	16	65	38	0	0	61	0.96
12587243--12587293	6	8.2	6	79	16	59	78	1	0	19	0.85
12592797--12592828	2	16.0	2	100	0	64	50	0	50	0	1.00
12593630--12593731	44	2.3	44	79	3	116	22	8	9	58	1.57
12594726--12594774	25	2.0	24	84	4	62	36	18	4	40	1.70
12594469--12594942	137	3.4	139	80	6	545	28	10	10	50	1.70
12596171--12596208	20	1.9	20	89	10	60	81	0	18	0	0.69
12596206--12596237	10	3.3	10	95	4	57	65	0	18	15	1.27
12597419--12597444	13	2.0	13	100	0	52	30	23	7	38	1.83
12597656--12597745	41	2.2	41	85	0	117	37	20	13	28	1.90
12597773--12597957	40	4.6	38	75	10	154	32	14	15	37	1.87
12597695--12597911	81	2.7	80	80	6	208	32	14	16	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12597808--12598050	42	5.9	40	73	13	149	30	14	19	35	1.92
12598519--12598588	35	2.0	35	97	0	131	28	4	22	44	1.72
12599850--12599970	58	2.1	58	82	1	143	48	10	7	33	1.66
12601668--12601735	30	2.3	30	89	0	109	20	48	8	22	1.77
12604412--12604443	3	10.7	3	93	0	55	31	3	0	65	1.08
12607517--12607916	143	2.7	147	84	4	506	33	22	13	30	1.93
12616158--12616182	13	1.9	13	100	0	50	32	0	20	48	1.50
12621185--12621218	14	2.2	16	90	10	54	35	2	0	61	1.11
12621510--12621543	15	2.2	16	89	5	52	52	0	2	44	1.16
12623132--12623253	61	2.0	62	82	4	149	31	10	11	45	1.74
12623305--12623445	61	2.3	60	80	8	162	42	14	8	34	1.76
12628786--12628824	21	1.9	20	84	5	51	23	20	17	38	1.93
12630795--12630851	27	2.1	28	90	3	89	45	7	8	38	1.62
12631185--12632050	125	6.9	122	73	11	445	38	10	10	40	1.73
12631563--12631760	63	3.2	60	74	14	170	39	9	10	40	1.71
12631270--12632127	124	6.9	123	74	11	464	38	10	10	40	1.74
12631443--12632232	247	3.2	245	76	11	573	38	11	10	40	1.74
12634659--12634731	28	2.6	28	74	10	69	56	10	8	24	1.61
12634682--12634866	56	3.4	55	69	8	155	54	8	11	25	1.64
12634661--12634881	107	2.1	105	84	3	282	55	9	9	26	1.62
12639926--12639980	8	6.8	8	78	10	58	74	1	14	9	1.14
12639926--12639975	18	2.9	18	82	5	59	72	2	16	10	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12639915--12639982	26	2.6	26	88	9	95	75	1	14	8	1.12
12640593--12640742	79	1.9	79	91	0	246	36	11	22	30	1.89
12640596--12640766	79	2.2	79	87	2	236	37	11	21	29	1.89
12641239--12641365	21	5.8	21	81	9	139	38	8	16	36	1.80
12641225--12641358	67	2.0	68	88	4	200	39	9	14	35	1.80
12641388--12641484	43	2.2	45	80	12	123	37	12	17	32	1.87
12641799--12642066	41	6.5	41	82	5	294	24	12	19	44	1.85
12641799--12642066	81	3.3	81	83	5	310	24	12	19	44	1.85
12641799--12642066	122	2.2	123	79	8	303	24	12	19	44	1.85
12642933--12642965	15	2.1	17	88	11	52	81	0	6	12	0.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105