genome.fa.s135.2.7.7.80.10.50.1000.73.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  73  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12909603--12909650	5	9.6	5	86	8	71	35	2	2	60	1.20
12910631--12910666	19	1.9	18	88	5	54	5	13	5	75	1.17
12910662--12910750	9	9.6	9	71	20	60	24	1	0	74	0.89
12910666--12910739	22	3.5	22	76	20	70	25	1	0	72	0.92
12910664--12910750	24	3.5	26	73	25	80	24	1	0	74	0.88
12910689--12910751	17	3.3	18	76	21	58	22	1	0	76	0.88
12910689--12910748	21	3.0	21	80	20	74	23	1	0	75	0.90
12915788--12915955	66	2.5	66	83	1	212	20	24	8	45	1.80
12915920--12916256	120	2.8	120	80	6	355	22	23	10	42	1.85
12916282--12916525	66	3.8	65	74	12	205	19	22	11	46	1.81
12916296--12916547	132	1.9	129	80	5	283	19	23	11	46	1.81
12916824--12916876	5	10.6	5	88	8	81	35	1	1	60	1.19
12916905--12916942	20	1.9	20	88	0	58	31	2	0	65	1.06
12916937--12916967	15	2.1	15	100	0	62	6	6	0	87	0.68
12917476--12917527	19	2.7	19	90	0	77	28	5	26	38	1.79
12917827--12917887	22	2.8	22	80	5	61	21	3	1	73	1.06
12917827--12917866	17	2.4	18	80	16	50	20	0	2	77	0.88
12917886--12917934	22	2.3	20	83	13	62	28	4	0	67	1.09
12917847--12917925	21	3.8	21	77	14	83	26	5	0	68	1.10
12920147--12920278	68	2.0	68	87	1	194	37	9	13	39	1.77
12921465--12921826	196	1.9	193	82	5	460	35	11	7	45	1.70
12921793--12921826	14	2.4	14	85	0	50	32	2	0	64	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12922137--12922163	14	1.9	14	100	0	54	22	14	22	40	1.90
12923040--12923268	48	5.0	44	74	11	153	40	18	13	26	1.89
12923140--12923319	49	3.7	48	85	3	220	38	21	11	28	1.88
12923140--12923317	97	1.8	96	83	5	234	39	21	11	27	1.88
12923285--12923388	35	3.0	35	87	1	156	37	20	12	29	1.89
12923135--12923695	214	2.6	207	85	6	725	37	21	11	29	1.88
12923355--12923695	48	6.7	48	75	11	288	36	21	11	29	1.89
12923355--12923537	49	3.8	49	91	2	291	36	21	12	29	1.90
12923522--12923553	16	2.0	16	100	0	64	43	18	0	37	1.51
12923473--12923598	65	1.9	65	93	0	216	38	20	9	30	1.85
12923211--12923695	162	3.0	161	83	7	538	37	21	10	29	1.88
12923538--12923695	49	3.2	49	86	5	239	37	22	11	29	1.89
12923431--12923645	114	1.9	114	91	0	349	37	21	11	29	1.88
12923953--12924205	42	5.8	41	78	15	231	42	22	13	22	1.87
12923953--12924207	90	2.8	90	88	4	356	42	22	12	22	1.87
12924605--12924692	35	2.6	34	82	7	108	38	14	11	35	1.82
12929231--12929256	5	5.2	5	100	0	52	0	0	19	80	0.71
12930844--12930877	14	2.4	14	85	0	50	32	2	0	64	1.08
12932158--12932204	24	2.0	24	83	8	60	55	0	4	40	1.19
12932328--12932445	62	1.9	63	87	1	175	44	11	11	33	1.76
12932482--12932597	57	2.1	55	80	6	126	45	6	16	31	1.73
12934563--12934596	15	2.2	16	89	5	52	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12936556--12936619	21	3.1	21	80	14	64	34	1	0	64	1.03
12936583--12936624	21	1.9	21	90	9	66	42	0	0	57	0.99
12936682--12936730	24	2.0	25	84	4	64	42	0	10	46	1.37
12936757--12936834	36	2.2	36	88	4	113	43	2	15	38	1.60
12937036--12937093	16	3.6	16	76	17	50	44	0	3	51	1.18
12937037--12937277	132	1.8	130	81	9	301	44	6	7	41	1.59
12938315--12938367	26	2.1	25	82	10	63	37	1	22	37	1.65
12938519--12938699	62	2.9	62	79	3	177	39	2	17	40	1.64
12939316--12939461	58	2.5	58	80	6	145	37	6	15	39	1.74
12942621--12942649	11	2.7	11	94	5	51	72	0	0	27	0.85
12942728--12942995	147	1.8	148	91	0	448	43	14	10	31	1.80
12943642--12943858	109	2.0	109	88	1	319	40	12	20	26	1.88
12944159--12944201	10	4.5	10	81	18	56	27	0	2	69	1.00
12944159--12944201	18	2.2	20	88	8	63	27	0	2	69	1.00
12944617--12944642	2	13.0	2	100	0	52	50	0	0	50	1.00
12946121--12946187	29	2.3	29	89	0	98	37	1	7	53	1.38
12946814--12946852	17	2.2	19	86	9	55	46	2	0	51	1.14
12947571--12947627	28	1.9	30	83	16	75	57	1	3	36	1.26
12948414--12948448	18	1.9	18	94	0	61	57	11	2	28	1.48
12948510--12948534	13	1.9	13	100	0	50	48	4	0	48	1.20
12948706--12948787	28	3.0	27	82	8	103	45	1	3	50	1.27
12948821--12948853	17	1.9	17	93	0	57	39	6	0	54	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12949178--12949222	21	2.0	21	83	8	54	40	6	2	51	1.41
12949598--12949636	19	2.1	19	100	0	78	35	23	15	25	1.94
12950945--12950992	21	2.3	21	92	0	78	39	10	20	29	1.86
12952851--12952889	3	13.0	3	94	0	69	64	0	2	33	1.08
12953878--12953908	3	10.3	3	100	0	62	32	0	0	67	0.91
12954040--12954076	11	3.5	11	88	7	58	72	0	0	27	0.84
12954038--12954077	10	3.9	10	87	6	62	70	0	0	30	0.88
12956210--12956293	28	2.8	29	82	8	107	3	8	8	79	1.03
12956211--12956294	32	2.8	30	85	10	118	3	8	8	79	1.03
12956460--12956883	105	4.0	103	80	6	431	31	14	15	37	1.88
12956503--12956871	105	3.5	105	85	4	449	32	14	15	37	1.88
12957232--12957316	22	3.8	21	70	11	53	24	17	25	31	1.97
12958006--12958039	17	1.9	17	88	5	50	2	5	2	88	0.70
12958696--12958726	8	3.8	8	91	8	53	9	0	0	90	0.46
12958696--12958727	9	3.7	9	95	4	57	9	0	0	90	0.45
12959025--12959067	5	8.8	5	85	14	63	81	0	2	16	0.79
12959030--12959069	19	2.2	18	95	4	71	82	0	2	15	0.77
12960438--12960470	3	11.0	3	93	0	57	69	0	0	30	0.88
12960438--12960524	22	4.0	22	74	14	65	70	0	0	29	0.88
12960465--12960523	17	3.5	16	81	9	64	71	0	0	28	0.87
12960439--12960524	9	9.2	9	75	20	54	70	0	0	29	0.87
12960576--12960624	23	2.1	23	84	0	62	12	51	16	20	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12961621--12961664	23	2.0	22	86	4	61	38	2	9	50	1.47
12962008--12962061	17	3.2	16	76	10	54	50	29	1	18	1.58
12973486--12973549	8	8.0	8	72	19	53	84	3	3	9	0.84
12973520--12973550	16	1.9	16	100	0	62	90	3	0	6	0.55
12973487--12973534	20	2.3	22	89	7	73	85	2	4	8	0.80
12973486--12973547	20	3.0	20	76	4	61	83	3	3	9	0.86
12973498--12973550	10	5.9	9	79	16	65	86	3	1	7	0.75
12974577--12976354	74	24.6	73	79	5	1549	20	22	13	43	1.87
12974586--12976354	147	12.2	147	80	5	1625	20	22	13	43	1.87
12974833--12975031	35	5.3	38	68	10	115	22	25	12	40	1.89
12976147--12976338	39	5.1	38	67	16	114	17	22	15	43	1.87
12977771--12977814	23	2.0	22	86	4	61	38	2	9	50	1.47
12978164--12978217	17	3.2	16	76	10	54	50	25	1	22	1.59
12980819--12980877	31	1.9	31	85	0	82	74	3	6	15	1.16
12982257--12982465	109	1.9	109	92	3	350	43	11	21	24	1.85
12982778--12982821	10	4.5	10	81	16	56	31	0	2	65	1.05
12982778--12982821	20	2.2	20	88	4	63	31	0	2	65	1.05
12983237--12983266	2	15.0	2	100	0	60	50	0	0	50	1.00
12984739--12984804	29	2.3	29	89	0	96	36	1	7	54	1.38
12987292--12987324	12	2.8	12	95	0	57	72	0	0	27	0.85
12987316--12987460	3	49.0	3	72	10	66	55	2	6	34	1.41
12987366--12987448	11	7.5	11	75	21	52	54	2	3	39	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12987365--12987454	40	2.2	40	83	11	105	55	2	3	38	1.29
12987616--12988002	114	3.4	114	79	6	374	32	14	27	25	1.95
12999421--12999452	15	2.1	16	94	5	57	37	3	6	53	1.42
12999559--12999643	10	8.4	10	70	17	59	80	4	3	11	1.00
12999551--12999643	17	5.3	17	73	22	68	80	4	3	11	0.97
12999550--12999642	24	3.7	24	78	8	80	79	4	3	12	1.00
12999553--12999635	6	13.7	6	73	20	50	80	3	3	12	0.96
12999603--12999648	18	2.5	19	92	3	76	82	4	2	10	0.89
13000455--13000491	8	4.9	8	87	12	51	81	0	5	13	0.86
13000455--13000489	7	4.9	7	89	3	52	82	0	5	11	0.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105