genome.fa.s135.2.7.7.80.10.50.1000.64.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  64  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11353299--11353626	137	2.4	137	79	6	313	21	15	10	51	1.74
11353380--11354182	141	5.8	137	72	11	309	20	15	12	51	1.75
11353584--11353765	98	1.9	98	80	6	217	19	16	11	52	1.74
11355744--11355799	17	3.2	17	70	22	53	16	7	14	62	1.52
11357411--11357791	35	10.9	36	75	14	202	21	17	8	52	1.71
11357308--11357483	87	2.0	87	92	0	289	21	16	12	50	1.78
11357412--11358419	70	14.4	69	70	12	474	19	15	11	53	1.72
11357222--11357571	193	1.8	193	81	7	442	20	15	12	51	1.75
11357553--11358419	35	24.8	35	73	9	216	19	15	11	53	1.72
11357398--11358352	105	9.1	105	73	7	451	19	15	11	52	1.73
11366260--11366426	35	4.8	35	78	1	120	25	16	5	52	1.66
11366260--11366531	70	3.9	69	78	2	240	23	15	7	53	1.67
11366327--11366703	171	2.2	171	80	5	402	21	16	10	51	1.74
11366295--11371895	35	157.8	35	67	13	679	20	15	11	52	1.74
11366969--11368902	106	18.5	105	70	8	466	20	16	11	51	1.75
11366941--11367327	141	2.7	141	74	9	304	19	16	12	52	1.74
11367505--11371356	106	36.3	104	69	12	634	20	15	11	51	1.74
11367525--11369188	316	5.3	312	73	8	890	20	16	12	51	1.76
11368310--11368402	34	2.7	33	81	9	89	16	11	15	56	1.66
11367537--11371905	70	61.6	70	69	11	1230	20	16	11	51	1.74
11369107--11369377	120	2.2	120	92	0	443	19	15	14	50	1.78
11369287--11369385	50	2.0	50	84	7	130	18	14	15	52	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11369337--11369744	141	2.9	138	77	12	355	19	13	12	53	1.71
11369351--11371905	105	24.2	104	71	12	818	20	16	11	52	1.73
11369910--11370365	248	1.8	249	81	6	575	20	16	10	52	1.72
11370026--11370757	141	5.2	140	73	8	359	21	15	9	53	1.69
11371398--11371443	19	2.4	19	92	0	74	30	13	4	52	1.59
11372025--11372073	16	2.7	19	78	15	59	32	0	6	61	1.21
11373215--11373912	58	11.7	58	86	8	971	44	8	13	33	1.73
11374446--11380606	35	177.0	35	69	11	1142	19	15	12	52	1.74
11374446--11411605	105	355.1	105	69	11	5221	20	15	11	52	1.74
11374456--11409629	70	502.0	70	68	12	3343	20	15	11	52	1.74
11376647--11377040	106	3.7	106	74	10	270	19	11	13	55	1.68
11375117--11379521	176	25.1	175	69	12	751	19	15	12	52	1.74
11377841--11377941	32	3.1	32	75	15	82	25	13	5	54	1.62
11377832--11378021	67	2.7	69	80	10	199	22	13	10	54	1.69
11378195--11378423	122	1.9	122	85	1	316	15	14	16	53	1.73
11378239--11378404	87	1.9	87	83	4	219	15	14	15	54	1.72
11378846--11378912	34	2.0	34	88	5	100	20	14	13	50	1.77
11378728--11409657	35	882.2	35	69	11	5851	20	16	11	52	1.74
11378917--11379514	209	2.8	209	76	9	484	20	16	11	52	1.74
11379250--11379619	106	3.5	103	74	13	294	20	15	13	51	1.76
11379473--11379774	167	1.8	166	82	7	387	20	14	12	52	1.73
11380396--11380487	31	2.7	34	82	12	111	20	16	11	51	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11380396--11380576	66	2.6	71	82	8	214	17	16	13	53	1.74
11379195--11380600	106	13.5	104	68	15	254	19	15	12	52	1.74
11380518--11380683	91	1.8	91	96	0	305	16	15	12	56	1.68
11380551--11380656	55	1.9	55	86	7	153	14	15	12	58	1.63
11380661--11380752	34	2.7	35	77	1	87	21	16	13	48	1.79
11381145--11381304	34	4.7	35	75	12	116	20	17	9	52	1.72
11381159--11381392	69	3.4	68	73	8	204	20	16	9	52	1.71
11381396--11381588	36	5.4	36	75	9	128	23	13	9	53	1.69
11381075--11381576	142	3.6	139	76	7	426	22	15	10	52	1.72
11381075--11381706	141	4.5	139	75	8	412	21	14	10	53	1.71
11382159--11382374	104	2.1	105	81	4	258	20	13	11	54	1.70
11382244--11382723	139	3.5	139	74	4	437	19	15	11	53	1.72
11382357--11382548	104	1.8	103	82	6	244	19	16	10	52	1.73
11385343--11385399	23	2.5	23	88	5	71	19	28	7	45	1.76
11385456--11385783	104	3.1	104	76	11	262	20	16	8	54	1.68
11385630--11385884	104	2.4	104	80	5	280	20	14	9	55	1.67
11386397--11386542	33	4.3	33	84	5	148	21	19	9	49	1.77
11386419--11386582	68	2.4	68	85	2	204	21	19	10	48	1.78
11386568--11386816	137	1.8	137	80	3	304	18	16	12	53	1.73
11386691--11386995	141	2.2	140	80	7	332	18	15	12	53	1.72
11388323--11388430	33	3.3	32	73	13	94	17	12	15	54	1.71
11389005--11389198	96	2.0	96	94	0	343	18	19	12	50	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11390648--11391521	141	6.2	138	73	10	365	20	16	10	53	1.71
11392303--11392473	88	1.9	88	82	4	211	18	19	14	47	1.83
11392452--11392598	76	1.9	76	83	2	188	17	21	11	50	1.77
11392385--11392769	182	2.2	176	80	6	409	17	18	12	51	1.77
11393220--11393252	17	1.9	17	88	11	50	24	9	6	60	1.49
11393263--11393306	21	2.1	21	95	0	79	13	15	13	56	1.67
11395070--11395137	36	2.0	32	91	8	100	26	19	8	45	1.79
11395891--11395990	31	3.1	31	86	11	137	24	18	9	49	1.76
11394155--11399039	176	27.8	176	69	11	888	19	15	12	52	1.74
11396907--11396961	27	2.0	27	82	6	67	20	10	9	60	1.57
11396873--11396996	62	2.0	62	84	3	160	17	12	12	57	1.65
11393745--11398438	246	19.1	245	70	13	704	19	15	12	52	1.74
11398926--11399381	248	1.8	248	80	6	539	20	15	11	52	1.73
11399948--11400184	103	2.3	101	80	1	276	18	14	13	53	1.72
11399916--11400354	173	2.5	172	78	9	473	19	15	11	52	1.73
11399953--11400548	138	4.3	136	75	9	415	20	15	11	53	1.71
11400402--11400592	107	1.8	105	81	5	242	20	13	9	56	1.65
11401003--11401397	209	1.9	209	80	7	471	18	15	11	53	1.71
11403435--11403498	33	2.0	33	87	3	94	17	15	10	56	1.67
11405587--11405904	141	2.3	140	78	6	313	21	14	11	52	1.73
11406807--11406931	60	2.1	61	90	1	198	19	15	12	52	1.74
11407780--11407846	30	2.3	30	84	2	91	17	20	13	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11409316--11409874	161	3.8	141	75	12	380	18	15	13	51	1.76
11409662--11409873	35	6.0	35	77	3	201	19	17	13	49	1.79
11409664--11409873	70	3.0	71	79	4	228	20	17	12	49	1.79
11409500--11409819	161	2.0	163	86	2	448	18	15	15	50	1.78
11409435--11409856	231	1.8	231	80	6	514	18	16	14	50	1.78
11409672--11409947	70	3.9	69	77	5	223	19	17	11	50	1.77
11409722--11409958	35	6.8	35	72	6	117	20	17	10	51	1.75
11410042--11410946	35	25.9	36	70	12	203	19	16	12	52	1.74
11410095--11410470	176	2.1	175	79	5	393	19	18	11	50	1.77
11410249--11410751	141	3.6	138	77	7	367	19	15	12	52	1.74
11410162--11410735	104	5.5	104	73	7	306	20	15	11	52	1.74
11410130--11410889	35	21.7	34	73	8	305	20	16	11	52	1.73
11410240--11411567	35	37.7	35	70	11	265	19	16	11	51	1.75
11410935--11410959	13	1.9	13	100	0	50	20	8	0	72	1.10
11410864--11411028	84	2.0	83	90	5	262	16	14	12	55	1.69
11410760--11411135	189	2.0	188	81	5	438	18	16	11	53	1.72
11413709--11413751	22	2.0	22	85	0	59	23	13	34	27	1.93
11430620--11430711	45	2.0	45	87	4	132	23	23	30	21	1.99
11430629--11430745	45	2.6	45	83	0	126	28	23	27	21	1.99
11440764--11440800	16	2.3	16	90	0	56	43	18	0	37	1.51
11442280--11442454	89	2.0	89	86	0	242	25	18	10	46	1.80
11467477--11467674	103	1.9	102	94	1	351	52	13	10	24	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11467497--11467707	103	2.0	102	84	7	275	55	11	8	24	1.63
11468077--11468115	3	13.0	3	88	0	60	64	2	2	30	1.21
11468859--11468920	16	4.1	15	74	17	56	70	1	6	20	1.17
11468883--11469001	3	39.3	3	70	17	68	68	1	4	26	1.17
11468853--11468892	16	2.4	17	83	12	55	72	0	7	20	1.08
11468867--11468951	21	4.4	19	75	18	70	70	1	2	25	1.06
11468870--11468944	9	7.9	10	73	14	61	70	1	2	25	1.08
11474455--11474564	57	1.9	58	83	9	145	30	13	6	49	1.67
11474493--11474638	73	2.0	74	86	4	206	34	12	5	47	1.64
11475463--11475530	15	4.4	16	81	12	79	67	0	5	26	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105