genome.fa.s135.2.7.7.80.10.50.1000.75.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  75  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13094195--13094285	20	4.7	19	75	17	82	65	2	3	28	1.20
13094233--13094358	23	5.4	23	71	21	86	62	2	4	30	1.28
13094259--13094359	41	2.3	43	76	10	107	63	1	4	29	1.26
13097688--13097720	2	17.0	2	93	6	59	48	0	0	51	1.00
13103262--13103287	2	13.0	2	100	0	52	50	0	0	50	1.00
13103724--13103762	20	2.0	20	85	10	53	82	2	2	12	0.89
13104363--13104451	38	2.3	38	83	7	101	38	15	12	33	1.85
13106090--13106217	59	2.2	60	80	4	143	32	7	12	47	1.68
13106176--13106250	33	2.2	35	83	7	100	36	13	4	46	1.62
13107262--13107290	11	2.6	11	100	0	58	37	27	0	34	1.57
13107584--13107735	61	2.5	62	81	10	161	39	13	12	34	1.83
13107998--13108054	20	2.8	20	94	0	96	21	56	0	22	1.43
13108640--13108680	20	2.0	20	100	0	82	39	9	14	36	1.79
13112116--13112182	32	2.1	32	86	5	91	58	13	5	22	1.57
13117213--13117285	33	2.2	33	83	11	87	23	6	6	63	1.44
13119314--13119338	2	12.5	2	100	0	50	52	0	0	48	1.00
13120060--13120105	20	2.3	21	78	17	53	50	6	6	36	1.54
13125700--13125754	4	14.0	4	85	11	69	70	0	1	27	0.97
13128906--13128988	3	27.0	3	77	9	69	56	2	2	38	1.25
13128881--13128964	38	2.2	38	93	0	141	51	3	2	42	1.32
13128881--13128975	38	2.5	38	84	6	113	52	4	2	41	1.32
13129824--13129868	19	2.3	18	81	11	54	62	2	2	33	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13135769--13135932	61	2.6	61	80	8	163	38	12	17	31	1.87
13135679--13136152	191	2.5	185	79	8	467	37	13	13	34	1.85
13137309--13137361	27	2.1	26	83	13	67	67	5	5	20	1.32
13137613--13137671	22	2.8	21	80	14	68	42	11	11	33	1.78
13137814--13137865	17	3.1	16	75	8	59	40	11	15	32	1.83
13137795--13137865	34	2.1	34	86	2	99	40	11	15	32	1.83
13137814--13137888	34	2.2	33	83	4	87	42	10	13	33	1.78
13138916--13138950	18	1.9	18	88	0	52	51	2	2	42	1.31
13139309--13139348	13	3.1	13	88	0	53	47	0	12	40	1.41
13139836--13139917	21	3.7	21	75	13	74	45	13	2	39	1.57
13139940--13140273	22	15.0	21	69	16	138	44	14	6	35	1.71
13139868--13140373	46	11.3	45	73	11	271	43	15	7	33	1.73
13139934--13140085	67	2.3	69	77	7	152	45	13	5	35	1.67
13140025--13140132	45	2.4	45	82	8	134	46	11	7	35	1.67
13140215--13140325	43	2.5	45	76	7	120	42	18	11	27	1.85
13140535--13140609	22	3.5	21	81	7	80	30	13	18	37	1.89
13140535--13140606	21	3.4	21	82	7	83	29	13	19	37	1.90
13140934--13141029	46	2.1	46	81	11	108	52	15	6	26	1.66
13140975--13141145	71	2.4	71	84	0	216	47	14	9	28	1.75
13146681--13146721	21	2.0	21	90	9	66	65	0	9	24	1.22
13159535--13159567	3	11.0	3	100	0	66	33	0	0	66	0.92
13160573--13160600	3	9.3	3	100	0	56	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13162494--13162552	17	3.4	17	73	15	57	77	1	3	16	0.98
13162513--13162556	22	2.0	22	86	0	61	79	2	2	15	0.93
13164064--13164121	21	2.9	21	79	5	75	29	20	1	48	1.60
13165647--13165766	43	2.8	44	83	3	154	35	15	14	35	1.87
13165605--13165794	43	4.4	43	69	9	118	37	14	12	35	1.84
13165754--13165948	78	2.5	78	84	3	239	38	16	13	30	1.88
13174109--13174169	26	2.3	28	75	18	67	13	3	6	77	1.09
13177094--13177148	19	2.9	19	82	15	60	14	5	7	72	1.24
13178088--13178155	30	2.3	30	82	7	86	27	4	4	63	1.33
13178380--13178408	3	9.7	3	100	0	58	31	0	0	68	0.89
13178542--13178603	13	4.5	15	79	20	57	80	0	1	17	0.79
13178542--13178601	25	2.2	25	85	11	75	81	0	1	16	0.77
13178558--13178594	11	3.5	10	86	13	56	86	0	0	13	0.57
13178560--13178602	18	2.4	17	88	11	68	86	0	0	13	0.58
13178543--13178600	6	9.8	6	71	17	50	81	0	1	17	0.78
13178540--13178603	26	2.3	29	82	15	82	79	0	1	18	0.81
13183042--13183125	41	2.0	41	88	8	127	59	3	2	34	1.28
13183048--13183135	41	2.1	41	83	10	108	62	3	2	31	1.24
13186784--13186808	3	8.3	3	100	0	50	64	36	0	0	0.94
13193150--13193178	2	14.5	2	100	0	58	48	0	51	0	1.00
13197541--13197578	16	2.4	16	82	13	51	76	2	0	21	0.91
13200389--13200451	27	2.6	24	76	19	69	1	47	0	50	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13201379--13201441	27	2.3	27	83	8	74	49	1	3	46	1.27
13203111--13203163	25	2.1	25	100	0	106	56	11	0	32	1.35
13203123--13203167	12	3.7	12	76	5	54	55	8	0	35	1.31
13204095--13204130	3	12.0	3	100	0	72	33	0	0	66	0.92
13204764--13204789	11	2.4	11	100	0	52	15	0	30	53	1.42
13214473--13214546	11	6.5	11	72	18	55	71	12	2	13	1.25
13214473--13214513	12	3.7	12	78	18	52	70	14	0	14	1.16
13214985--13215024	11	3.6	11	82	0	53	22	0	27	50	1.50
13215052--13215207	52	3.0	52	85	1	197	42	7	22	27	1.81
13215780--13215844	25	2.6	25	73	9	69	36	10	33	18	1.86
13216074--13216115	11	3.8	11	87	0	66	16	2	30	50	1.58
13216074--13216115	22	1.9	22	95	0	75	16	2	30	50	1.58
13216140--13216296	52	3.0	52	80	9	169	41	8	22	27	1.82
13217206--13217237	15	2.1	15	94	0	55	50	25	6	18	1.70
13219272--13219310	9	4.1	10	80	12	55	76	0	10	12	1.01
13219272--13219307	19	1.9	19	94	5	65	77	0	8	13	0.98
13220581--13220645	23	2.9	22	77	6	67	43	0	3	53	1.16
13220611--13220671	28	2.3	25	76	20	61	55	0	1	42	1.09
13220624--13220659	16	2.2	16	90	9	56	50	0	0	50	1.00
13220725--13220791	28	2.4	27	78	14	66	40	0	2	56	1.14
13220723--13220763	16	2.8	16	78	14	52	41	0	2	56	1.13
13222107--13222164	26	2.3	26	85	5	75	51	0	5	43	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13222828--13222964	63	2.2	62	80	5	150	37	10	13	37	1.79
13232911--13232952	14	2.8	15	78	10	50	45	0	4	50	1.23
13233836--13233860	13	1.9	13	100	0	50	68	0	0	32	0.90
13234650--13234678	2	15.0	2	92	7	51	48	0	0	51	1.00
13235662--13235686	13	1.9	13	100	0	50	56	4	0	40	1.18
13235831--13235861	3	10.3	3	92	0	53	35	0	0	64	0.94
13238587--13238647	29	2.1	29	84	0	77	49	8	4	37	1.54
13254315--13254610	101	2.9	102	95	1	522	31	14	20	33	1.93
13257513--13257554	2	21.0	2	100	0	84	50	0	0	50	1.00
13258486--13258850	182	2.0	181	88	0	532	25	17	14	42	1.87
13260464--13260727	137	1.9	136	92	0	438	30	12	20	36	1.90
13263278--13263309	3	10.7	3	100	0	64	34	0	0	65	0.93
13269312--13269362	21	2.5	20	81	9	59	50	0	1	47	1.12
13270011--13270044	18	1.9	18	88	5	52	44	2	2	50	1.32
13271084--13271129	23	2.0	22	84	12	58	26	0	8	65	1.21
13272935--13272983	16	3.1	17	82	11	59	57	2	0	40	1.10
13277480--13277594	52	2.2	52	92	0	185	25	8	24	41	1.83
13279196--13279256	30	2.1	30	90	6	99	63	0	0	36	0.94
13285866--13285930	3	21.3	3	75	9	60	67	1	3	27	1.14
13285861--13285925	28	2.3	28	86	2	94	67	1	4	26	1.18
13286124--13286320	44	4.5	44	83	3	247	41	20	16	20	1.90
13286124--13286320	87	2.2	88	81	6	240	41	20	16	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13286283--13286481	84	2.3	82	81	10	222	45	19	10	24	1.82
13286260--13286563	44	7.1	44	79	10	240	43	18	11	25	1.84
13287966--13288029	8	7.8	8	76	13	58	12	7	0	79	0.92
13287958--13288029	25	2.8	25	85	10	101	13	8	0	77	0.98
13287958--13288027	33	2.1	33	86	5	97	14	8	0	77	0.99
13287958--13288043	9	9.8	9	75	15	74	15	9	0	75	1.04
13288006--13288043	19	2.0	20	84	5	51	15	13	0	71	1.16
13287965--13288030	26	2.6	25	90	4	98	13	7	0	78	0.94
13292877--13292901	10	2.5	10	100	0	50	8	8	32	52	1.60
13294792--13294817	13	2.0	13	100	0	52	69	0	0	30	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105