genome.fa.s135.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  94  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16686508--16686560	28	2.0	28	88	7	83	45	0	1	52	1.11
16687267--16687352	30	2.9	30	75	11	79	40	2	3	53	1.31
16687449--16687506	29	2.1	28	80	6	64	53	1	8	36	1.42
16696661--16696724	26	2.4	26	87	10	85	60	0	0	39	0.97
16696891--16696925	2	17.5	2	100	0	70	51	0	0	48	1.00
16699119--16699158	16	2.3	18	83	12	57	35	0	2	62	1.09
16700301--16700410	31	3.6	30	81	13	129	43	4	1	50	1.33
16700752--16700847	10	9.2	10	69	20	54	27	0	2	70	0.98
16700752--16700847	15	6.1	15	70	20	54	27	0	2	70	0.98
16700754--16700888	74	1.9	74	80	7	163	29	1	2	66	1.12
16700867--16700931	20	3.4	20	79	14	75	30	6	0	63	1.19
16700807--16700932	55	2.3	52	81	12	132	33	3	0	61	1.20
16703604--16703646	3	14.7	3	90	4	70	65	0	2	32	1.06
16704022--16704046	6	4.2	6	100	0	50	84	0	0	16	0.63
16705158--16705221	17	3.9	17	77	8	78	50	29	1	18	1.57
16705149--16705236	32	2.7	32	82	1	113	50	25	1	23	1.57
16705209--16705243	15	2.3	15	95	0	61	57	8	0	34	1.29
16713772--16713840	22	3.1	22	77	8	77	27	20	17	34	1.95
16714157--16714198	22	1.9	22	90	0	66	33	26	14	26	1.94
16714062--16714369	110	2.8	109	83	3	354	22	21	16	39	1.92
16714383--16714708	109	3.0	108	80	6	338	23	19	18	38	1.93
16714672--16714738	22	3.0	22	84	2	80	29	22	16	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16715954--16715985	14	2.3	14	94	0	55	21	3	0	75	0.95
16716428--16716479	15	3.3	15	79	12	59	53	21	0	25	1.45
16716427--16716473	7	5.8	8	79	20	53	51	21	0	27	1.48
16716477--16716590	30	3.8	29	76	13	106	50	27	0	21	1.55
16718021--16718091	29	2.4	29	84	9	83	61	1	1	35	1.13
16718454--16718508	23	2.3	25	84	6	69	60	3	1	34	1.25
16719400--16719722	166	2.0	158	91	6	522	53	5	5	34	1.50
16719821--16719851	16	2.0	15	93	6	53	45	3	0	51	1.17
16719903--16719936	18	2.0	17	88	11	52	64	0	8	26	1.22
16720028--16720061	9	3.6	9	85	14	50	35	0	0	64	0.94
16720415--16720669	128	2.0	128	89	0	393	30	20	17	31	1.96
16725341--16725370	2	15.0	2	100	0	60	50	0	0	50	1.00
16726766--16726807	21	2.0	22	90	4	68	52	0	2	45	1.13
16726767--16726835	21	2.9	25	79	12	67	49	2	1	46	1.25
16727067--16727111	21	2.2	20	84	7	56	37	2	2	57	1.23
16728681--16728740	29	2.1	29	100	0	120	31	21	6	40	1.79
16729434--16729479	23	2.0	23	83	8	58	52	2	2	43	1.25
16742147--16742177	15	2.1	15	93	0	53	25	19	3	51	1.62
16743072--16743145	36	2.1	36	89	0	112	41	24	12	21	1.87
16746826--16746941	61	2.0	57	84	6	151	36	10	3	50	1.54
16746941--16746965	13	1.9	13	100	0	50	80	0	0	20	0.72
16747032--16747080	23	2.1	23	85	14	66	75	2	2	20	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16747329--16747372	21	2.0	22	86	4	63	0	50	0	50	1.00
16747605--16747634	10	2.8	11	90	10	53	56	10	6	26	1.57
16747910--16747961	12	4.2	13	80	7	54	78	0	3	17	0.89
16747921--16748022	12	8.8	11	74	19	50	65	0	4	29	1.13
16747981--16748140	4	40.0	4	69	15	55	64	3	3	28	1.26
16747930--16748111	47	3.8	43	72	23	120	63	1	4	30	1.24
16747967--16748028	24	2.5	24	89	5	88	59	1	3	35	1.23
16748002--16748111	45	2.5	42	73	18	71	62	2	3	30	1.26
16748449--16748858	41	10.0	42	87	5	286	39	19	14	26	1.90
16748449--16748859	83	5.0	82	81	6	350	39	19	14	27	1.90
16748475--16748859	124	3.1	124	80	5	377	40	18	14	27	1.89
16750907--16750931	11	2.3	11	100	0	50	0	16	0	84	0.63
16754487--16754761	59	4.7	58	81	8	299	36	12	6	44	1.68
16754486--16754753	115	2.3	116	89	5	391	36	13	6	43	1.69
16754791--16754824	16	2.1	16	89	10	52	70	0	11	17	1.16
16754775--16754841	6	11.2	6	71	17	50	76	1	5	16	1.06
16755441--16755470	10	2.8	11	90	10	53	63	16	0	20	1.31
16755750--16755970	14	14.5	14	70	19	67	67	1	3	27	1.16
16755755--16755974	12	18.9	11	68	26	77	66	1	3	28	1.17
16755754--16755948	4	48.8	4	71	15	70	65	1	3	29	1.17
16755766--16755947	102	1.8	99	83	12	246	64	1	3	30	1.19
16755760--16755960	60	3.3	59	77	16	162	65	1	2	29	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16755814--16755939	46	2.8	45	77	14	125	64	1	3	30	1.19
16761739--16761810	22	3.4	22	71	11	69	47	9	5	37	1.60
16761733--16761813	41	2.1	39	83	6	101	46	11	4	37	1.61
16763124--16763168	17	2.5	18	82	7	56	53	4	0	42	1.21
16763217--16763248	13	2.5	13	89	0	55	28	6	0	65	1.16
16763283--16763326	22	2.0	22	100	0	88	45	13	4	36	1.64
16763545--16763885	170	2.0	171	91	4	555	37	7	10	43	1.68
16763877--16763903	2	13.5	2	100	0	54	48	0	0	51	1.00
16765631--16765698	2	34.0	2	84	0	73	45	0	7	47	1.31
16769170--16769219	25	2.0	25	81	14	59	32	4	6	58	1.41
16769705--16769760	19	2.9	19	73	19	53	58	0	0	41	0.98
16769998--16770044	9	5.1	9	87	5	58	29	0	6	63	1.19
16769998--16770044	19	2.5	19	82	3	60	29	0	6	63	1.19
16770274--16770342	29	2.3	29	82	5	84	52	0	1	46	1.09
16770290--16770355	29	2.3	28	84	10	80	48	0	0	51	1.00
16770803--16770829	3	9.0	3	100	0	54	33	0	0	66	0.92
16777027--16777064	13	3.1	13	85	11	53	36	0	0	63	0.95
16777010--16777082	24	3.0	24	80	5	76	38	0	2	58	1.12
16777374--16777423	26	1.9	26	84	8	66	16	6	2	76	1.08
16785368--16785428	25	2.4	25	100	0	122	47	6	13	32	1.68
16785991--16786074	29	2.8	29	81	16	100	57	0	0	42	0.99
16785989--16786036	13	3.5	13	73	15	51	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16795786--16795861	40	1.9	40	84	10	102	35	1	2	60	1.19
16795987--16796041	23	2.3	24	81	3	67	49	0	0	50	1.00
16803044--16803156	56	2.0	56	94	0	199	49	12	18	19	1.79
16803948--16803991	24	1.9	23	86	9	63	27	6	27	38	1.82
16804103--16804203	40	2.5	40	78	15	109	46	0	2	49	1.23
16804217--16804270	24	2.3	23	79	17	58	61	1	0	37	1.07
16808745--16808774	15	2.1	14	93	6	51	83	0	0	16	0.65
16810453--16810479	10	2.7	10	100	0	54	59	0	7	33	1.25
16812220--16812296	36	2.1	36	81	13	88	51	1	1	45	1.17
16812234--16812296	11	5.3	12	72	24	53	50	1	0	47	1.10
16812260--16812302	13	3.2	14	80	12	54	48	2	0	48	1.14
16813491--16813538	21	2.4	20	80	13	55	52	0	0	47	1.00
16814166--16814217	20	2.7	19	74	11	52	51	0	0	48	1.00
16816628--16816661	2	17.5	2	87	6	52	47	52	0	0	1.00
16823979--16824017	12	3.1	12	82	13	51	41	0	12	46	1.42
16824198--16824228	16	2.0	16	93	6	55	67	0	0	32	0.91
16824209--16824273	21	3.1	21	74	8	71	53	1	3	41	1.25
16827396--16827455	11	4.8	13	73	20	56	46	0	5	48	1.24
16829952--16829991	21	2.0	21	85	5	55	45	2	0	52	1.14
16832879--16832922	22	2.0	22	86	0	61	36	25	13	25	1.92
16834288--16834326	3	13.0	3	100	0	78	66	0	0	33	0.92
16840121--16840387	133	2.0	132	91	0	435	36	14	17	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16845097--16845126	14	2.1	14	93	0	51	53	10	0	36	1.35
16845095--16845160	34	2.0	33	87	3	96	56	7	1	34	1.37
16845831--16845903	34	2.1	34	82	0	83	46	8	2	42	1.48
16846292--16846344	23	2.2	25	90	6	83	16	9	3	69	1.30
16846726--16846755	14	2.1	15	93	6	53	56	20	10	13	1.65
16849840--16849892	19	2.7	20	79	5	72	54	0	3	41	1.18
16849906--16849938	17	1.9	18	88	11	52	30	0	12	57	1.35
16850091--16850137	25	2.0	23	84	16	60	44	2	0	53	1.12
16860284--16860311	3	9.3	3	100	0	56	32	0	0	67	0.91
16863593--16863627	2	17.5	2	100	0	70	51	0	48	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105