genome.fa.s135.2.7.7.80.10.50.1000.74.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  74  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13000454--13000507	15	3.6	15	78	14	58	79	1	3	14	0.95
13000489--13000601	3	38.7	3	66	11	56	57	5	3	33	1.38
13000471--13000513	14	2.9	15	86	10	54	79	2	0	18	0.85
13000455--13000517	22	3.0	21	83	4	65	76	1	3	19	1.01
13000471--13000516	17	2.8	17	87	6	60	78	2	0	19	0.86
13000554--13000600	13	3.7	13	82	5	69	53	4	0	42	1.20
13002089--13002122	16	2.1	17	94	5	61	11	0	8	79	0.94
13006826--13006927	38	2.8	35	74	8	96	33	12	17	36	1.88
13009225--13009257	10	3.4	10	87	4	50	72	0	3	24	0.98
13016942--13017001	29	2.0	30	93	3	104	55	3	21	20	1.58
13017948--13018392	220	2.0	220	97	0	845	39	15	10	34	1.82
13019193--13019266	30	2.5	30	80	8	80	45	2	8	43	1.47
13019217--13019319	53	1.9	54	82	11	131	46	0	8	43	1.41
13019296--13019340	23	1.9	23	86	4	63	51	0	6	42	1.28
13020839--13020888	26	2.0	25	88	4	73	42	0	4	54	1.19
13020858--13020898	16	2.7	15	81	7	55	43	0	2	53	1.13
13020865--13020951	16	5.2	16	71	19	54	52	0	1	45	1.08
13020865--13020950	18	5.1	17	72	18	56	53	0	1	45	1.07
13020997--13021159	15	10.9	15	67	19	90	42	1	3	52	1.27
13020980--13021037	23	2.3	25	88	11	84	43	0	0	56	0.99
13020979--13021037	27	2.1	28	87	3	84	42	0	0	57	0.98
13020982--13021169	66	3.1	60	75	11	161	42	1	3	53	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13020979--13021149	8	21.1	8	67	16	59	41	1	2	54	1.23
13021119--13021156	18	2.1	19	85	5	51	50	0	2	47	1.15
13021703--13021778	32	2.4	32	86	4	100	32	10	14	42	1.80
13023011--13023094	40	2.1	41	88	2	125	36	11	3	47	1.58
13023554--13023869	23	13.6	23	64	23	103	42	0	2	54	1.17
13023550--13023790	26	8.9	25	68	22	98	43	0	2	54	1.13
13023661--13023709	18	2.9	17	75	19	50	38	0	2	59	1.09
13023597--13023790	29	6.7	29	69	17	116	42	0	2	55	1.13
13027521--13027562	20	2.1	21	82	8	52	80	2	14	2	0.90
13027524--13027561	19	1.9	19	89	5	58	78	2	15	2	0.97
13027503--13027552	18	2.8	18	77	17	50	76	2	18	4	1.04
13027761--13027795	17	1.9	17	88	11	52	77	0	22	0	0.78
13028885--13028922	15	2.6	15	84	16	53	71	0	2	26	1.00
13030238--13030272	15	2.3	15	90	5	52	45	0	5	48	1.26
13032050--13032157	39	2.8	38	80	6	94	23	4	24	48	1.70
13032069--13032157	39	2.3	39	84	3	108	22	4	24	48	1.69
13032359--13032416	3	18.7	3	80	7	55	25	3	0	70	1.03
13034802--13035570	387	2.0	388	91	1	1238	43	12	10	33	1.78
13039159--13040288	339	3.3	336	84	3	1419	36	11	15	36	1.84
13039159--13040282	509	2.2	509	86	2	1526	36	11	15	36	1.84
13039159--13040295	170	6.7	170	83	3	1313	36	11	15	36	1.84
13046855--13047172	157	2.0	157	90	0	501	34	8	14	42	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13049148--13049181	17	2.0	17	94	0	59	2	0	8	88	0.62
13049834--13049904	7	9.9	7	72	22	58	30	0	0	69	0.89
13049803--13049912	10	11.1	10	71	14	52	27	1	0	70	1.04
13049797--13049908	44	2.5	45	83	9	124	28	1	0	68	1.05
13049842--13049912	10	6.9	11	71	24	57	29	0	0	70	0.88
13049839--13049912	32	2.4	31	80	13	89	29	0	0	70	0.88
13051179--13051416	117	2.0	117	100	0	476	34	7	19	39	1.80
13051543--13051578	16	2.2	16	95	0	63	27	16	0	55	1.42
13055681--13055744	32	2.0	32	96	0	119	43	10	6	39	1.65
13056892--13056927	18	2.0	18	88	0	54	66	0	11	22	1.22
13058447--13058500	21	2.4	23	82	11	69	50	9	1	38	1.45
13062825--13062916	38	2.4	38	79	0	112	38	18	8	34	1.82
13063047--13063077	13	2.5	13	94	5	55	29	6	6	58	1.48
13064575--13064702	60	2.2	60	81	7	154	35	7	10	46	1.66
13064661--13064735	33	2.2	35	81	11	93	38	14	1	45	1.54
13066466--13066504	20	2.0	20	94	0	69	20	56	0	23	1.42
13069058--13069089	11	2.9	11	95	0	55	25	0	28	46	1.53
13069114--13069270	52	3.0	52	83	1	181	41	8	23	26	1.82
13069795--13069908	25	4.6	25	76	6	97	35	7	35	21	1.81
13069795--13069890	50	1.9	50	83	6	124	36	7	34	21	1.82
13069795--13069906	49	2.3	50	81	4	129	36	7	34	21	1.81
13070154--13070185	11	2.9	11	95	0	55	25	0	28	46	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13070210--13070366	52	3.0	52	85	1	208	39	8	25	26	1.84
13070891--13071004	25	4.6	25	77	6	106	35	7	35	21	1.81
13070891--13071002	49	2.3	50	82	4	138	35	7	35	21	1.81
13071250--13071281	11	2.9	11	95	0	55	25	0	28	46	1.53
13071306--13071462	52	3.0	52	84	1	199	39	8	25	26	1.85
13071987--13072100	25	4.6	25	76	6	97	35	7	35	21	1.81
13071987--13072082	50	1.9	50	83	6	124	36	7	34	21	1.82
13071987--13072098	49	2.3	50	81	4	129	36	7	34	21	1.81
13072346--13072377	11	2.9	11	95	0	55	25	0	28	46	1.53
13072402--13072558	52	3.0	52	84	0	197	40	8	24	26	1.84
13073083--13073196	25	4.6	25	73	6	88	36	7	34	21	1.81
13073442--13073473	11	2.9	11	95	0	55	25	0	28	46	1.53
13073498--13073654	52	3.0	52	84	1	199	39	8	25	26	1.85
13074181--13074286	25	4.3	25	78	8	110	37	7	33	20	1.81
13074537--13074568	11	2.9	11	95	0	55	25	0	28	46	1.53
13074593--13074749	52	3.0	52	84	0	197	40	8	24	26	1.84
13075274--13075387	25	4.6	25	73	6	88	37	6	35	21	1.78
13075314--13075382	24	2.8	24	86	6	86	37	8	36	17	1.81
13075633--13075664	11	2.9	11	95	0	55	25	0	28	46	1.53
13075699--13075845	52	2.8	52	84	2	179	39	8	25	26	1.84
13076370--13076477	24	4.5	24	75	8	94	37	7	35	20	1.81
13076370--13076480	49	2.3	49	80	3	125	36	7	35	21	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13076668--13076744	27	2.8	27	92	4	118	32	5	31	31	1.80
13076753--13076784	11	2.9	11	95	0	55	25	0	28	46	1.53
13076813--13076965	52	2.9	52	85	0	189	39	9	24	26	1.85
13078991--13079057	32	2.1	32	88	0	98	56	13	7	22	1.62
13078976--13079060	32	2.5	33	81	12	84	56	12	5	24	1.59
13078999--13079060	32	1.9	32	93	0	106	58	11	6	24	1.56
13079218--13079284	34	2.0	33	82	2	80	47	28	4	19	1.68
13079322--13079422	46	2.2	45	82	8	114	34	34	3	26	1.75
13084319--13084360	21	2.0	21	85	0	57	30	2	23	42	1.67
13085470--13085953	58	8.1	57	78	9	396	36	12	6	44	1.68
13085470--13085917	117	3.8	118	84	8	502	36	12	6	43	1.68
13086049--13086073	4	6.2	4	100	0	50	52	0	0	48	1.00
13086400--13086479	23	3.6	22	75	11	74	65	3	5	26	1.30
13086397--13086479	43	1.9	43	85	4	114	63	3	4	27	1.31
13086420--13086558	23	6.2	23	70	22	93	61	2	6	30	1.33
13086458--13086557	41	2.3	43	78	13	107	61	2	7	30	1.34
13087027--13087289	41	6.4	41	87	5	311	42	19	14	23	1.88
13087027--13087289	83	3.2	81	84	5	343	42	19	14	23	1.88
13087027--13087289	124	2.1	123	87	4	368	42	19	14	23	1.88
13087807--13087847	22	1.9	21	95	5	73	34	19	9	36	1.85
13088938--13089015	25	3.4	23	78	10	88	7	11	0	80	0.89
13088936--13089013	15	5.1	16	75	18	67	7	12	0	79	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13088965--13088992	10	2.8	10	100	0	56	7	0	0	92	0.37
13088940--13088989	17	2.9	17	80	14	57	8	8	0	84	0.79
13092968--13093120	61	2.5	62	84	7	197	43	12	3	40	1.58
13093028--13093649	236	2.6	233	82	9	710	39	11	5	44	1.63
13093022--13093682	58	11.2	56	76	12	480	39	10	5	44	1.62
13093660--13093694	18	1.9	18	88	11	54	51	0	2	45	1.16
13093703--13093812	6	17.5	6	68	15	53	73	4	2	19	1.13
13093702--13093848	72	2.0	69	81	15	190	70	6	2	21	1.20
13093775--13093814	14	2.8	14	88	3	53	82	2	2	12	0.87
13093732--13093885	72	2.2	70	85	8	204	70	6	1	22	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105