genome.fa.s135.2.7.7.80.10.50.1000.86.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  86  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15094985--15095064	39	2.1	39	92	4	135	65	0	1	33	1.01
15102551--15102612	30	2.1	30	93	0	106	56	4	17	20	1.59
15106412--15106453	5	8.0	5	80	19	50	38	0	2	59	1.10
15106370--15106456	24	3.5	24	74	6	66	40	0	4	55	1.21
15106419--15106464	22	2.0	24	91	8	78	39	0	4	56	1.19
15106430--15106480	24	2.1	24	85	7	68	45	0	3	50	1.20
15106432--15106482	23	2.2	24	82	10	61	45	0	5	49	1.26
15106533--15106574	18	2.3	19	91	4	68	33	0	0	66	0.92
15106669--15106698	15	2.0	15	93	0	51	53	0	3	43	1.17
15110519--15110557	18	2.1	19	95	4	71	48	0	12	38	1.42
15116073--15116098	2	13.0	2	100	0	52	50	0	0	50	1.00
15118676--15118701	2	13.0	2	100	0	52	50	0	0	50	1.00
15119905--15119932	2	14.0	2	100	0	56	50	0	0	50	1.00
15126072--15126101	1	30.0	1	100	0	60	100	0	0	0	0.00
15126662--15126703	13	3.3	13	73	6	50	50	0	9	40	1.35
15127171--15127209	11	3.5	11	78	0	51	38	0	5	56	1.22
15127172--15127229	22	2.6	22	86	0	71	36	3	6	53	1.45
15127172--15127256	27	3.4	25	76	10	86	36	3	7	52	1.46
15127401--15127447	6	7.7	6	77	13	51	46	0	0	53	1.00
15127401--15127453	11	4.5	11	76	17	52	47	1	0	50	1.12
15127402--15127448	13	3.8	13	86	5	62	46	0	0	53	1.00
15127845--15127892	16	2.9	16	76	14	53	31	2	0	66	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15134192--15134525	168	2.0	166	97	1	623	39	15	13	31	1.86
15135466--15135504	4	9.8	4	100	0	78	51	23	0	25	1.49
15142884--15142937	18	2.9	18	72	5	54	37	7	0	55	1.28
15143680--15143715	19	1.9	19	88	5	56	33	41	13	11	1.80
15147893--15147955	18	3.4	19	80	4	67	58	1	1	38	1.17
15149449--15149482	2	17.0	2	100	0	68	50	0	0	50	1.00
15150637--15150683	24	2.0	24	83	8	60	48	2	10	38	1.50
15150786--15150838	23	2.4	22	82	14	65	56	0	1	41	1.10
15150866--15150895	16	1.9	15	93	6	51	66	3	13	16	1.37
15153021--15153081	19	3.4	17	77	18	61	60	1	0	37	1.07
15155096--15155125	2	15.0	2	100	0	60	50	50	0	0	1.00
15166338--15166464	36	3.4	36	75	9	130	65	1	1	31	1.11
15166443--15166471	5	5.8	5	100	0	58	79	0	0	20	0.74
15168684--15168835	36	3.9	38	77	10	139	49	0	1	48	1.14
15168725--15168846	10	12.5	10	67	19	62	45	0	1	52	1.16
15168726--15168846	13	9.3	13	68	16	72	45	0	1	52	1.16
15168683--15168832	18	8.1	19	71	15	100	49	0	1	48	1.14
15168843--15168869	9	3.0	9	100	0	54	66	0	0	33	0.92
15181457--15181529	29	2.4	30	86	8	96	45	5	1	47	1.34
15182219--15182280	26	2.4	26	81	5	72	56	1	4	37	1.30
15187339--15187390	27	1.9	27	100	0	104	32	9	26	30	1.89
15187342--15187400	27	2.2	27	84	6	75	37	8	28	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15196726--15196769	23	2.0	23	86	4	63	29	6	4	59	1.44
15196870--15196933	24	2.6	24	80	11	76	53	6	1	39	1.36
15222605--15222643	2	19.5	2	100	0	78	51	0	0	48	1.00
15240702--15240763	30	2.0	31	81	9	74	56	1	4	37	1.30
15240890--15240925	16	2.3	16	95	4	65	36	0	0	63	0.94
15242141--15242190	23	2.2	22	85	7	64	56	0	0	44	0.99
15251725--15251786	27	2.3	27	83	2	72	51	0	0	48	1.00
15251735--15251788	19	2.8	19	83	5	65	50	0	0	50	1.00
15251745--15251825	42	2.0	41	81	16	96	53	1	0	45	1.08
15251835--15251882	25	1.9	25	84	16	64	43	2	2	52	1.24
15251878--15251917	10	3.9	10	83	6	53	47	0	0	52	1.00
15251906--15251938	13	2.4	14	85	10	50	51	0	0	48	1.00
15251883--15251938	11	4.6	13	80	10	57	50	0	0	50	1.00
15251912--15251948	19	1.9	19	94	0	65	54	0	0	45	1.00
15265041--15265071	16	1.9	16	93	0	53	51	25	19	3	1.62
15268822--15268893	34	2.1	34	84	2	92	43	6	8	41	1.62
15268931--15269003	34	2.1	34	87	0	101	46	12	4	36	1.61
15274904--15274931	2	14.0	2	100	0	56	50	0	0	50	1.00
15276312--15276361	20	2.5	20	96	0	91	38	8	6	48	1.57
15280111--15280175	29	2.2	30	91	2	105	27	4	3	64	1.28
15280947--15281019	11	6.5	11	80	12	60	78	0	4	17	0.91
15280947--15281019	23	3.2	23	85	12	82	78	0	4	17	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15280977--15281017	19	2.2	19	87	12	59	80	0	4	14	0.87
15280957--15281009	13	4.4	13	79	15	60	77	0	3	18	0.92
15281399--15281438	11	3.8	11	83	12	57	60	20	0	20	1.37
15281399--15281442	10	4.3	11	86	13	58	61	18	0	20	1.35
15281815--15281871	24	2.4	22	82	11	60	73	1	21	3	1.07
15281873--15282113	3	80.7	3	79	8	100	63	2	6	26	1.33
15282170--15282286	26	4.5	26	73	4	101	26	21	27	24	1.99
15282489--15282627	54	2.6	54	78	5	156	32	17	26	23	1.97
15282565--15282970	114	3.5	114	84	3	456	34	14	26	23	1.94
15282566--15282985	231	1.8	228	81	2	518	34	14	26	24	1.94
15282802--15283036	117	2.0	117	79	1	256	39	15	23	21	1.92
15283259--15283370	41	2.7	41	79	2	127	31	17	16	34	1.92
15283430--15283478	6	8.7	6	84	10	68	0	2	14	83	0.73
15283430--15283478	11	4.3	12	85	10	68	0	2	14	83	0.73
15283430--15283478	17	2.9	17	82	11	66	0	2	14	83	0.73
15286867--15286931	29	2.2	30	91	2	105	27	4	3	64	1.28
15287519--15287574	26	2.2	26	80	6	60	30	1	8	58	1.39
15287699--15287774	11	6.6	12	79	10	61	73	1	2	22	1.03
15287699--15287774	23	3.3	24	78	12	79	73	1	2	22	1.03
15287730--15287772	6	7.5	6	89	7	63	74	0	0	25	0.82
15288006--15288047	21	2.0	21	85	0	57	64	19	2	14	1.39
15288424--15288481	24	2.4	23	85	8	71	75	1	17	5	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15288483--15288721	3	79.7	3	84	8	229	68	1	5	24	1.19
15288778--15288894	26	4.5	26	75	4	110	26	20	27	25	1.99
15288778--15288894	52	2.2	52	80	3	128	26	20	27	25	1.99
15289067--15289178	41	2.7	41	78	0	125	32	17	16	33	1.92
15289238--15289276	6	6.8	6	88	11	64	0	0	15	84	0.62
15289238--15289276	11	3.5	11	93	6	69	0	0	15	84	0.62
15289238--15289276	17	2.3	17	91	8	62	0	0	15	84	0.62
15292216--15292272	30	1.9	30	89	3	89	24	7	3	64	1.34
15293049--15293080	12	2.8	11	90	9	55	75	0	3	21	0.95
15293049--15293112	12	5.3	12	77	17	53	76	0	3	20	0.92
15293074--15293118	5	8.8	5	83	11	56	77	0	4	17	0.92
15293072--15293126	25	2.3	23	84	9	74	80	0	5	14	0.89
15293079--15293126	20	2.5	19	83	12	62	79	0	6	14	0.92
15293918--15293954	16	2.2	18	90	9	60	78	5	16	0	0.93
15293916--15293962	24	2.0	23	84	12	60	78	4	17	0	0.90
15293958--15294035	6	12.8	6	85	8	50	71	1	2	24	1.06
15293976--15294159	3	63.7	3	80	11	136	67	2	5	24	1.24
15294238--15294307	26	2.7	26	86	0	104	24	25	30	20	1.99
15294480--15294658	54	3.3	54	81	3	162	33	15	27	24	1.95
15294587--15294997	114	3.6	114	82	2	439	36	12	26	24	1.91
15294722--15295057	117	2.9	116	80	5	288	39	13	23	23	1.90
15295280--15295427	41	3.6	41	79	0	161	31	22	16	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15295451--15295506	6	9.5	6	92	1	78	8	0	5	85	0.73
15295451--15295515	12	5.6	11	83	3	67	7	0	6	86	0.72
15295451--15295506	18	3.2	18	92	2	87	8	0	5	85	0.73
15299406--15299460	23	2.3	23	79	11	67	7	9	23	60	1.52
15299862--15300286	47	8.7	48	80	8	403	39	19	11	28	1.87
15299862--15300286	146	2.9	145	83	5	489	39	19	11	28	1.87
15299990--15300284	96	3.0	95	84	6	369	40	20	10	28	1.86
15299869--15300284	99	4.3	95	80	7	401	39	19	11	29	1.87
15304606--15304653	16	2.9	16	74	17	53	60	6	20	12	1.54
15311370--15311411	11	3.8	11	81	12	50	11	0	7	80	0.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105