genome.fa.s135.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  63  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11259791--11259886	47	2.0	47	88	4	140	27	12	12	47	1.77
11260460--11260499	21	1.9	21	100	0	80	15	12	5	67	1.38
11261143--11261330	68	2.7	67	79	6	189	20	14	14	50	1.77
11261409--11261470	20	3.4	20	66	25	55	14	6	12	66	1.44
11264460--11264632	91	1.9	92	80	5	208	19	16	10	53	1.71
11264423--11264666	126	1.9	125	79	7	271	20	15	11	53	1.71
11265597--11266141	177	3.1	172	75	8	481	19	14	12	54	1.70
11266844--11267523	211	3.2	208	77	6	629	18	15	13	52	1.74
11266842--11267523	317	2.1	315	80	4	773	18	15	13	52	1.75
11267199--11268151	211	4.5	211	77	7	694	19	15	12	52	1.74
11269860--11270026	69	2.4	69	89	6	239	14	14	18	52	1.75
11270515--11270648	67	1.9	71	82	5	168	17	20	11	50	1.76
11271068--11271234	85	2.0	85	92	0	280	19	17	10	52	1.72
11270964--11271340	191	2.0	191	79	3	418	20	16	11	51	1.75
11272116--11272205	36	2.8	30	75	18	99	18	14	14	52	1.75
11272620--11273139	209	2.5	209	78	6	493	20	16	11	52	1.73
11272981--11273071	18	5.2	18	65	24	59	25	10	10	52	1.69
11273164--11273311	69	2.1	69	84	7	194	24	14	12	49	1.77
11274127--11274249	63	2.0	63	83	3	158	21	17	8	51	1.73
11274167--11274228	28	2.1	30	82	5	74	19	20	9	50	1.76
11273844--11274498	239	2.7	238	87	5	848	19	15	12	52	1.73
11274968--11275097	63	2.1	63	97	0	242	19	16	15	49	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11275580--11275758	68	2.6	69	78	7	191	19	13	12	54	1.71
11277213--11277344	41	3.2	40	83	8	158	18	18	11	52	1.74
11277213--11277344	42	3.2	42	86	6	173	18	18	11	52	1.74
11280470--11280671	106	1.9	106	86	6	293	19	16	12	50	1.77
11282079--11282422	139	2.5	138	79	7	369	18	15	13	52	1.74
11282367--11282665	101	2.9	100	73	15	252	18	17	12	51	1.75
11282710--11283273	139	4.0	138	76	10	429	19	16	11	51	1.75
11282689--11283256	104	5.4	103	73	12	335	19	16	11	52	1.73
11283473--11283598	66	1.9	67	83	4	166	21	19	9	49	1.77
11283592--11283946	142	2.5	140	82	6	407	19	15	12	52	1.74
11286548--11286738	69	2.8	69	78	7	210	19	12	14	53	1.71
11286583--11286918	174	1.9	175	83	6	432	19	13	13	52	1.73
11287152--11287335	100	1.8	100	82	4	237	23	16	11	47	1.79
11287195--11287404	69	3.1	68	76	9	205	23	17	9	49	1.76
11287259--11287772	209	2.5	206	77	5	514	20	14	11	52	1.73
11288962--11289024	30	2.1	30	85	2	83	19	19	11	50	1.76
11288932--11289060	65	2.0	65	84	0	168	22	18	9	49	1.76
11288798--11289177	206	1.8	206	79	4	444	21	17	10	50	1.75
11290477--11290542	32	2.1	32	82	0	78	19	18	9	53	1.71
11290518--11290756	104	2.3	104	79	7	243	20	18	12	48	1.79
11290509--11290784	104	2.6	102	77	9	229	19	18	11	49	1.78
11290661--11290800	68	2.0	69	79	8	151	19	20	10	49	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11292454--11292833	173	2.2	172	81	2	413	20	16	11	51	1.75
11294206--11294712	66	7.3	66	71	15	251	19	15	12	52	1.74
11294230--11294524	148	2.0	148	98	0	572	20	16	11	51	1.76
11294396--11294888	201	2.4	204	79	8	475	19	15	12	51	1.75
11295527--11295571	22	2.0	22	91	0	72	11	6	17	64	1.46
11295535--11295582	22	2.2	22	81	7	53	10	4	20	64	1.41
11296242--11296520	139	2.0	141	83	5	352	21	18	10	49	1.77
11296108--11296730	106	5.9	107	75	6	398	20	16	12	50	1.77
11296286--11296718	139	3.1	135	76	9	365	21	16	10	50	1.75
11297186--11297303	62	1.9	62	84	6	159	17	18	11	51	1.75
11297082--11297305	104	2.2	103	81	8	248	19	16	13	50	1.78
11297043--11297373	132	2.5	131	75	8	303	19	16	12	51	1.75
11297596--11297976	211	1.8	211	81	4	473	19	14	12	53	1.72
11298106--11298345	106	2.3	106	78	3	252	21	16	11	50	1.76
11298963--11299447	106	4.6	105	75	8	344	22	14	9	52	1.70
11299471--11300266	106	7.6	107	71	11	337	19	15	11	53	1.72
11300807--11300942	65	2.1	64	83	6	175	15	12	16	55	1.70
11300844--11300942	30	3.1	30	76	12	99	14	13	17	55	1.69
11300715--11301047	171	1.9	171	80	4	375	19	12	15	52	1.73
11300987--11301182	65	2.9	66	80	8	175	19	16	12	51	1.77
11301085--11301148	30	2.1	30	85	5	85	17	10	17	54	1.70
11301015--11301217	100	2.0	100	81	5	232	18	16	12	52	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11301303--11301434	69	1.9	69	80	6	151	17	14	14	53	1.73
11301320--11301641	171	1.9	174	80	7	388	19	14	12	53	1.73
11301779--11301963	62	2.9	62	79	10	187	22	17	9	50	1.75
11302002--11302191	106	1.8	105	84	3	265	20	14	12	53	1.72
11302345--11302643	106	2.8	104	77	6	271	20	14	13	52	1.75
11306127--11306505	141	2.7	140	78	6	326	19	15	12	52	1.74
11306194--11306431	71	3.4	69	77	7	191	18	15	15	51	1.76
11307374--11307425	26	2.0	26	100	0	104	19	19	7	53	1.68
11307141--11307670	271	2.0	271	94	0	934	19	16	12	52	1.75
11308467--11308592	67	1.9	67	80	3	146	15	12	14	57	1.66
11309825--11309860	16	2.2	16	100	0	72	25	11	5	58	1.54
11309756--11309928	87	2.0	85	82	4	204	21	16	10	52	1.73
11310108--11310453	137	2.5	139	78	6	348	17	17	13	51	1.76
11310660--11310926	103	2.6	105	80	10	291	19	13	9	56	1.65
11313206--11313465	69	3.8	68	80	8	199	19	15	10	54	1.70
11314612--11314647	18	2.0	18	94	0	63	11	19	5	63	1.46
11314631--11314809	67	2.7	65	80	12	211	18	16	8	56	1.65
11314744--11314980	103	2.3	104	80	10	245	18	15	12	54	1.72
11314764--11315083	138	2.3	141	79	8	314	18	15	12	53	1.72
11315525--11315635	54	2.1	54	89	3	170	11	19	14	54	1.71
11316212--11316620	222	1.8	223	82	3	529	18	15	13	52	1.74
11316648--11316674	13	2.1	13	100	0	54	22	22	0	55	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11316613--11316709	48	2.0	48	84	4	124	23	20	7	48	1.74
11318868--11319004	68	2.0	69	82	5	170	21	17	8	51	1.72
11321577--11321700	66	1.9	66	84	3	169	16	16	15	51	1.77
11321437--11321948	206	2.5	206	78	6	480	18	16	13	51	1.76
11323033--11323261	125	1.8	125	81	2	289	22	15	10	51	1.74
11323875--11323934	17	3.3	19	70	13	54	16	6	16	60	1.56
11324573--11324624	17	3.0	17	71	23	54	19	9	9	61	1.54
11332514--11332547	17	1.9	18	88	5	52	20	11	5	61	1.50
11333605--11333997	207	1.9	208	82	5	492	17	15	12	54	1.71
11334695--11334733	20	2.0	20	89	0	60	10	12	20	56	1.65
11334621--11334796	90	2.0	90	83	6	223	19	16	10	53	1.70
11334741--11335123	211	1.8	210	80	8	456	20	17	11	50	1.76
11335971--11336459	211	2.4	200	76	10	470	21	13	9	54	1.68
11336208--11340295	141	29.2	137	70	11	461	20	16	11	51	1.75
11337441--11337496	29	1.9	29	85	0	76	19	19	12	48	1.80
11337404--11337682	99	2.7	99	73	13	251	18	13	12	54	1.71
11340342--11340543	69	2.9	69	83	5	228	19	14	12	52	1.73
11342024--11342229	101	2.0	101	81	3	236	17	15	14	52	1.74
11343501--11343818	139	2.3	136	77	6	329	18	14	14	52	1.75
11343966--11344086	62	2.0	61	85	1	161	18	13	10	57	1.64
11343931--11344112	97	1.9	97	86	5	260	18	15	9	56	1.67
11345607--11345682	39	1.9	39	91	0	125	19	17	9	53	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11346181--11346374	68	2.8	68	79	6	194	19	14	12	53	1.72
11346660--11347390	143	5.2	143	73	11	411	19	16	11	52	1.73
11327695--11358419	246	125.3	246	70	12	2257	19	15	12	52	1.74
11347906--11348156	137	1.8	137	81	3	308	19	15	14	50	1.78
11348449--11348588	34	3.9	36	82	7	135	16	14	14	55	1.70
11349483--11349887	69	5.8	69	73	7	291	18	17	12	51	1.76
11350714--11350971	102	2.5	103	79	7	254	19	15	11	53	1.72
11350739--11350985	137	1.8	137	81	7	313	19	15	12	52	1.75
11353130--11353630	139	3.6	139	76	11	354	21	15	11	51	1.74
11353297--11353674	106	3.6	105	76	7	295	21	16	11	51	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105