genome.fa.s135.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  13  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2419957--2420050	27	3.3	27	73	19	75	18	7	1	73	1.12
2420058--2420465	59	7.0	59	87	5	521	45	8	13	32	1.73
2420342--2420447	50	2.1	51	89	1	160	45	8	13	33	1.73
2421922--2421976	28	1.9	28	85	3	74	29	1	7	61	1.33
2422425--2422467	19	2.2	20	87	4	61	30	2	9	58	1.42
2426150--2426199	12	4.5	11	74	16	50	36	0	0	64	0.94
2426140--2426185	19	2.4	19	82	13	58	36	0	0	63	0.95
2426500--2426562	31	2.0	31	82	11	76	53	0	1	44	1.10
2426523--2426626	24	4.4	24	72	9	70	43	0	0	55	1.06
2426588--2426653	29	2.3	30	81	5	73	31	3	3	62	1.26
2443246--2443701	59	7.7	57	84	10	587	33	14	8	42	1.76
2443246--2443705	116	3.9	117	90	6	655	33	14	8	43	1.76
2443780--2443817	12	3.2	12	86	13	53	86	2	0	10	0.66
2443780--2443819	20	2.0	20	90	0	62	85	5	0	10	0.75
2444133--2444176	20	2.2	20	88	4	63	27	20	25	27	1.99
2444229--2444299	31	2.3	31	85	0	97	25	23	23	26	2.00
2444308--2444361	25	2.2	24	83	6	63	40	18	5	35	1.74
2444765--2444832	15	4.3	15	77	17	59	70	5	0	23	1.09
2444795--2444836	9	4.7	9	91	5	59	69	9	0	21	1.17
2444793--2444836	18	2.4	19	85	11	65	68	9	0	22	1.18
2444764--2444834	33	2.3	31	82	7	81	69	5	0	25	1.10
2445021--2445164	42	3.5	42	92	1	245	35	24	18	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2445021--2445182	42	3.9	41	91	5	222	37	22	17	22	1.94
2445168--2445197	15	2.0	15	100	0	60	53	6	13	26	1.64
2445128--2445236	56	1.9	57	98	1	211	44	16	16	22	1.87
2445185--2445401	42	5.2	40	86	8	301	40	21	16	22	1.91
2445087--2445281	98	2.0	98	88	8	290	41	19	16	22	1.91
2445048--2445388	140	2.5	138	84	12	435	39	21	16	22	1.92
2445185--2445401	84	2.6	84	90	5	361	40	21	16	22	1.91
2446394--2446539	8	19.2	8	80	12	157	11	15	0	71	1.17
2446394--2446538	15	9.6	15	83	10	172	11	15	0	71	1.18
2446399--2446538	30	4.6	31	87	8	193	11	15	0	72	1.15
2450039--2450076	18	2.1	18	85	9	51	50	0	2	47	1.15
2450119--2450152	11	3.1	11	86	0	50	29	0	0	70	0.87
2450113--2450176	27	2.3	28	81	5	67	31	3	3	62	1.26
2454660--2454689	3	10.0	3	100	0	60	33	33	0	33	1.58
2460882--2461084	102	2.0	102	100	0	406	47	7	17	27	1.75
2469218--2469263	23	1.9	25	86	8	69	56	15	10	17	1.67
2474662--2474717	25	2.3	23	85	11	69	73	3	0	23	0.99
2488898--2488944	23	2.0	24	87	4	69	31	6	8	53	1.57
2500698--2500729	14	2.2	15	94	5	57	59	6	6	28	1.46
2505709--2505783	39	1.9	39	88	0	114	34	25	12	28	1.91
2507666--2507717	19	2.5	23	82	17	69	42	3	0	53	1.19
2507662--2507700	18	2.2	18	86	9	53	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2507666--2507719	22	2.7	20	78	18	58	42	3	0	53	1.18
2507824--2507874	18	2.8	18	93	0	84	43	0	25	31	1.55
2511489--2511541	27	2.0	27	82	10	65	47	1	5	45	1.37
2529418--2529457	21	1.9	21	89	0	62	17	20	10	52	1.72
2533420--2533459	2	20.0	2	100	0	80	50	0	0	50	1.00
2536195--2536232	17	2.2	18	90	4	60	65	7	0	26	1.19
2554002--2554050	16	3.1	16	100	0	98	42	24	6	26	1.78
2554638--2554790	78	2.0	78	93	0	261	35	14	9	41	1.78
2556360--2556547	64	2.9	64	93	0	322	39	17	19	23	1.92
2557701--2557738	20	1.9	20	89	10	60	76	0	0	23	0.79
2558796--2558820	2	12.5	2	100	0	50	52	0	0	48	1.00
2565938--2566002	21	3.2	21	76	12	64	47	0	0	52	1.00
2567952--2568015	31	2.1	31	96	0	119	45	3	9	42	1.52
2573166--2573310	52	2.8	51	84	6	166	50	7	14	27	1.70
2576343--2576404	24	2.6	24	75	12	65	27	3	19	50	1.63
2578149--2578250	51	2.0	52	92	1	170	37	19	14	28	1.91
2588966--2589044	39	2.0	39	90	0	122	44	11	6	37	1.66
2589787--2589846	31	1.9	32	86	10	88	28	0	3	68	1.05
2591635--2591671	2	18.5	2	100	0	74	0	51	0	48	1.00
2593734--2593792	23	2.6	23	80	0	64	38	3	3	54	1.34
2600433--2600470	20	1.9	20	94	0	67	23	18	26	31	1.97
2601050--2601090	17	2.3	18	83	8	57	60	7	0	31	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2601062--2601163	16	6.6	15	71	17	75	63	7	0	28	1.22
2601362--2601387	1	26.0	1	100	0	52	0	0	0	100	0.00
2601394--2601886	42	12.0	41	89	7	720	36	21	19	22	1.95
2601394--2601886	165	3.0	163	91	5	773	36	21	19	22	1.95
2601394--2601886	123	4.0	123	95	2	873	36	21	19	22	1.95
2603112--2603187	23	3.8	20	78	21	79	5	15	0	78	0.91
2603112--2603159	23	2.2	23	92	7	82	4	16	0	79	0.89
2603112--2603191	25	3.2	25	78	7	83	5	16	0	78	0.91
2603143--2603174	16	2.0	16	100	0	64	0	6	0	93	0.34
2607031--2607277	61	4.0	61	87	8	356	31	13	8	46	1.74
2607297--2607424	16	7.8	16	69	17	50	75	1	4	18	1.06
2607321--2607360	9	4.3	9	87	6	53	80	0	5	15	0.88
2607312--2607358	19	2.4	19	82	3	58	78	0	4	17	0.90
2607287--2607361	35	2.1	36	85	4	100	77	0	5	17	0.95
2607748--2607785	20	1.9	20	94	0	67	23	18	26	31	1.97
2608341--2608466	55	2.3	50	74	21	112	66	4	1	26	1.20
2608766--2608801	2	18.0	2	88	0	54	50	44	5	0	1.25
2608766--2608801	16	2.2	16	100	0	72	50	44	5	0	1.25
2612396--2612441	22	2.1	22	84	15	60	36	0	2	60	1.09
2612973--2613239	30	8.5	31	75	13	181	20	1	31	46	1.60
2612953--2613240	16	18.4	16	73	11	222	20	1	31	46	1.59
2613507--2613555	3	16.3	3	100	0	98	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2616166--2616268	51	2.0	52	86	1	145	36	18	14	30	1.91
2617039--2617621	144	4.0	144	96	0	1058	29	25	13	31	1.94
2624743--2624768	2	13.0	2	100	0	52	50	0	0	50	1.00
2627823--2627848	9	2.9	9	100	0	52	23	0	7	69	1.14
2630604--2630755	72	2.1	72	93	0	259	27	22	16	33	1.95
2630745--2631046	144	2.1	144	93	0	514	28	25	14	31	1.95
2641065--2641143	39	2.0	39	90	0	122	44	11	6	37	1.66
2643734--2643772	2	19.5	2	100	0	78	0	51	0	48	1.00
2645764--2645801	20	1.9	20	88	0	58	18	5	10	65	1.41
2645804--2645845	14	2.9	15	89	6	61	30	0	4	64	1.14
2652600--2652715	57	2.0	58	93	3	198	34	12	13	39	1.82
2677167--2677217	3	16.3	3	84	8	66	62	0	33	3	1.13
2677171--2677213	22	2.0	22	90	0	68	60	0	34	4	1.17
2677168--2677216	25	2.0	25	91	0	80	61	0	34	4	1.15
2682564--2682605	20	2.0	21	86	4	59	54	0	0	45	0.99
2689516--2689548	17	1.9	17	88	11	50	30	27	21	21	1.98
2695491--2695544	22	2.3	24	87	6	76	31	0	0	68	0.90
2695491--2695535	15	2.8	16	83	10	56	28	0	0	71	0.87
2698702--2698742	19	2.2	19	86	4	57	41	0	7	51	1.30
2724331--2724366	15	2.4	16	86	13	58	75	0	0	25	0.81
2724335--2724364	8	3.9	8	91	8	53	76	0	0	23	0.78
2725946--2726054	54	2.0	54	96	0	200	61	4	5	28	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2726731--2726761	15	2.1	15	93	0	53	70	0	29	0	0.87
2727052--2727084	16	2.1	16	88	11	50	9	0	6	84	0.76
2727052--2727084	15	2.1	16	88	5	50	9	0	6	84	0.76
2727147--2727508	197	1.8	197	81	8	459	46	8	9	35	1.66
2731811--2731956	72	2.0	72	82	2	177	31	19	18	30	1.96
2736168--2736228	25	2.4	25	81	13	72	21	1	9	67	1.29
2736217--2736260	3	14.7	3	100	0	88	34	0	0	65	0.93
2736663--2736705	13	3.2	14	83	9	63	74	0	4	20	1.00
2745826--2745896	31	2.3	31	75	7	72	50	2	5	40	1.40
2749615--2749671	3	19.0	3	88	0	87	61	0	35	3	1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105