genome.fa.s135.2.7.7.80.10.50.1000.68.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  68  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12105135--12105213	38	2.1	38	80	4	88	22	6	2	68	1.25
12105129--12105213	37	2.3	39	77	8	95	27	5	2	64	1.28
12106550--12106579	3	10.0	3	100	0	60	66	0	0	33	0.92
12113287--12113330	22	2.0	22	86	0	61	45	11	11	31	1.76
12119148--12119181	2	17.0	2	100	0	68	0	0	50	50	1.00
12122641--12122997	62	5.7	62	71	10	208	44	8	5	40	1.60
12122835--12123043	63	3.4	62	78	4	206	44	8	5	41	1.59
12122806--12123043	126	1.9	125	82	7	295	44	7	6	40	1.60
12123763--12123823	26	2.4	24	79	12	77	45	0	1	52	1.10
12123994--12124084	26	3.8	23	72	20	71	48	1	1	49	1.15
12123982--12124071	26	3.5	23	73	19	72	46	2	2	48	1.26
12124177--12124309	25	5.2	25	67	17	69	48	4	0	45	1.28
12125087--12125131	20	2.2	20	88	0	63	46	2	2	48	1.26
12125235--12125293	28	2.1	28	83	3	73	40	6	5	47	1.52
12141670--12141713	22	2.0	22	86	8	63	45	11	6	36	1.67
12145435--12145522	25	3.5	25	83	6	90	37	13	27	21	1.91
12145458--12145546	25	3.6	25	90	4	128	41	13	25	19	1.88
12150190--12150229	7	5.7	7	96	0	71	62	0	0	37	0.95
12150174--12150229	21	2.7	21	86	8	71	62	0	0	37	0.95
12150915--12150944	15	2.0	15	93	0	51	70	3	0	26	1.03
12155927--12155968	19	2.2	20	91	4	68	50	0	4	45	1.23
12155934--12155989	17	3.1	18	85	10	69	48	0	1	50	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12163944--12163995	25	2.1	24	82	10	61	25	7	13	53	1.65
12163952--12164004	26	2.0	26	82	10	63	28	7	13	50	1.68
12166913--12166963	23	2.2	24	85	3	68	58	0	5	35	1.22
12167013--12167046	17	1.9	18	94	5	61	47	5	0	47	1.26
12166967--12167098	69	1.9	69	85	1	185	50	6	5	37	1.52
12168290--12168335	21	2.2	21	84	0	56	32	19	17	30	1.95
12168405--12168434	12	2.5	12	94	0	51	36	16	20	26	1.93
12170999--12171026	2	14.0	2	100	0	56	50	0	0	50	1.00
12171707--12171750	21	2.1	21	100	0	88	40	18	13	27	1.88
12182371--12182427	27	2.1	28	86	3	80	33	5	19	42	1.74
12187326--12187358	16	2.1	16	94	0	57	36	0	21	42	1.53
12187332--12187365	16	2.1	16	88	0	50	35	2	20	41	1.68
12187462--12187518	28	2.1	28	83	3	71	35	5	17	42	1.72
12189056--12189112	19	2.9	19	78	5	60	54	5	8	31	1.53
12191188--12191278	45	2.0	45	97	0	173	34	34	14	17	1.90
12193888--12193936	22	2.2	21	82	7	53	38	0	8	53	1.31
12194171--12194334	63	2.6	63	86	4	217	45	3	2	48	1.31
12194201--12194281	26	3.2	24	70	20	67	46	2	2	48	1.28
12194296--12194327	16	2.0	16	93	0	55	43	3	0	53	1.16
12194217--12194348	63	2.1	63	85	1	176	43	5	3	47	1.41
12194831--12194865	17	2.1	17	88	0	52	11	2	8	77	1.10
12195558--12195596	18	2.2	18	90	0	60	51	7	0	41	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12195713--12195793	17	4.8	16	73	13	72	62	4	0	32	1.16
12196012--12196070	22	2.8	22	79	5	59	42	1	5	50	1.34
12196185--12196245	18	3.3	18	79	6	68	42	3	0	54	1.17
12196186--12196246	19	3.2	19	79	9	79	44	3	0	52	1.17
12197270--12197316	22	2.1	23	88	7	71	29	6	0	63	1.19
12202992--12203052	31	2.0	32	84	12	83	32	6	1	59	1.33
12203434--12203473	14	2.9	14	85	10	55	50	0	7	42	1.30
12204720--12204802	2	42.5	2	78	9	82	53	2	1	43	1.21
12205984--12206055	35	2.1	35	97	0	135	26	25	25	23	2.00
12217071--12217109	20	2.0	20	85	10	53	48	7	10	33	1.66
12219385--12219453	31	2.3	31	89	2	104	34	5	8	50	1.57
12220577--12220606	3	10.0	3	92	0	51	63	3	0	33	1.11
12220584--12220646	16	4.1	16	80	11	53	66	0	0	33	0.92
12220632--12220665	12	2.8	12	81	0	50	64	0	0	35	0.94
12220721--12220777	23	2.5	23	91	5	89	14	49	17	19	1.80
12221538--12221572	16	2.2	16	89	0	52	28	37	14	20	1.91
12222184--12222319	32	4.3	32	70	21	92	48	32	0	18	1.53
12222184--12222377	16	12.2	15	68	20	83	48	32	0	18	1.52
12227654--12227702	16	3.0	16	81	3	62	85	6	2	6	0.80
12227656--12227707	11	4.6	11	75	20	54	86	7	1	3	0.76
12227657--12227707	26	1.9	27	88	4	77	86	7	1	3	0.77
12227656--12227698	10	4.3	10	82	8	52	88	4	2	4	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12227658--12227707	9	5.4	9	80	17	50	86	8	2	4	0.78
12229911--12229966	22	2.6	23	77	11	64	33	21	14	30	1.93
12230133--12230176	23	1.9	23	90	0	70	29	22	20	27	1.99
12229802--12230398	175	3.5	175	84	3	737	24	20	18	36	1.95
12230261--12230365	22	4.7	23	76	8	92	27	24	19	28	1.98
12230417--12231243	73	11.5	73	80	7	802	22	22	11	43	1.85
12230493--12230593	34	2.9	33	73	12	96	19	23	12	43	1.86
12230394--12231193	210	3.7	210	81	5	865	22	22	11	44	1.85
12230789--12230907	38	3.2	38	73	12	113	23	17	10	48	1.77
12230951--12231133	35	4.9	39	65	16	111	24	21	9	44	1.81
12230417--12231243	142	5.7	146	80	6	825	22	22	11	43	1.85
12231489--12231522	12	2.8	12	90	0	50	58	2	0	38	1.13
12231500--12231563	16	4.2	16	75	16	57	64	0	0	35	0.94
12231547--12231587	6	6.7	6	94	5	73	70	0	0	29	0.87
12233067--12233120	16	3.3	15	82	12	63	46	37	1	14	1.56
12233040--12233119	32	2.5	33	83	4	90	47	32	1	18	1.57
12234513--12234537	12	2.1	12	100	0	50	16	0	8	76	1.02
12237155--12237440	156	1.8	156	83	6	382	34	9	8	47	1.66
12239423--12239511	45	2.0	45	100	0	178	51	6	2	39	1.41
12239426--12239498	22	3.3	22	67	17	69	50	8	2	38	1.47
12239493--12239545	9	5.9	9	80	6	63	66	0	1	32	1.03
12242958--12242996	19	2.0	19	85	5	51	12	20	2	64	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12249303--12249332	3	10.0	3	100	0	60	66	0	33	0	0.92
12252111--12252173	19	3.4	19	72	16	69	17	22	4	55	1.60
12252110--12252181	36	2.0	36	97	0	135	18	20	5	55	1.62
12256380--12256428	23	2.1	23	84	3	62	67	12	2	18	1.32
12266001--12266065	34	1.9	34	90	6	105	35	20	9	35	1.84
12268099--12268130	17	1.9	17	93	6	57	40	0	0	59	0.97
12277285--12277321	2	19.0	2	94	5	67	48	0	0	51	1.00
12279244--12279717	144	3.3	140	74	9	348	34	10	12	42	1.77
12281344--12281395	26	2.0	27	92	3	88	42	40	0	17	1.49
12281345--12281401	26	2.2	26	87	6	80	45	38	0	15	1.47
12281384--12281499	25	4.8	24	65	21	64	43	29	0	25	1.60
12281361--12281535	63	2.6	64	75	14	174	43	32	1	22	1.61
12281408--12281464	19	2.9	19	80	10	62	42	28	1	28	1.66
12281384--12281540	71	2.2	71	84	6	194	44	31	1	22	1.61
12281881--12281930	18	2.8	18	96	3	93	44	46	0	10	1.37
12285495--12285745	125	2.0	125	98	0	484	42	12	8	35	1.74
12286266--12286304	20	2.0	20	89	0	60	56	2	20	20	1.54
12287234--12287287	26	2.1	26	82	6	65	24	22	24	29	1.99
12287428--12287472	21	2.2	20	85	14	58	28	4	2	64	1.25
12287441--12287482	21	2.0	21	85	4	57	33	4	2	59	1.31
12288825--12288900	34	2.2	34	86	9	102	35	10	15	38	1.82
12289155--12289198	20	2.2	20	91	0	70	25	4	20	50	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12291309--12291552	121	2.0	121	96	0	452	33	20	6	39	1.79
12294955--12294997	19	2.3	19	87	0	68	62	13	18	4	1.48
12296110--12296190	28	2.8	28	84	3	108	59	9	3	27	1.46
12296110--12296181	28	2.5	30	88	4	112	58	9	4	27	1.48
12296511--12296549	13	3.0	13	81	11	53	82	0	0	17	0.68
12296512--12296552	9	4.8	9	79	11	50	85	0	0	14	0.60
12296522--12296552	16	1.9	16	93	0	53	87	0	0	12	0.55
12297337--12297409	21	3.4	21	77	9	67	8	1	10	79	0.99
12297514--12297545	16	2.0	16	93	0	55	53	0	0	46	1.00
12297477--12297608	64	2.0	67	88	4	198	54	3	6	36	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105