genome.fa.s135.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  22  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4532245--4532320	19	4.2	17	76	20	57	19	3	2	73	1.11
4541724--4541785	32	1.9	32	90	0	97	48	30	0	20	1.50
4541874--4541925	18	2.9	16	78	16	50	46	42	0	11	1.40
4541954--4542009	19	2.8	21	83	5	71	53	28	0	17	1.44
4541980--4542070	33	2.8	32	72	11	85	50	30	0	18	1.47
4541980--4542173	67	2.9	66	72	14	164	48	31	1	18	1.58
4542045--4542091	21	2.3	20	92	3	76	55	31	0	12	1.38
4542103--4542157	26	2.1	26	86	0	74	49	29	1	20	1.59
4544046--4544098	21	2.4	22	90	6	81	49	0	1	49	1.12
4554218--4554363	59	2.5	59	95	2	260	31	10	14	43	1.80
4554995--4555021	2	13.5	2	100	0	54	48	0	0	51	1.00
4555236--4555293	29	2.0	29	86	6	82	36	0	1	62	1.06
4556481--4556520	3	13.7	3	94	5	73	35	0	0	65	0.93
4558469--4558505	1	37.0	1	100	0	74	0	0	0	100	0.00
4559762--4559823	32	1.9	32	90	0	97	48	30	0	20	1.50
4559912--4559963	18	2.9	16	78	16	50	46	42	0	11	1.40
4559992--4560046	18	2.8	21	81	10	62	54	27	0	18	1.44
4559996--4560127	6	19.9	7	66	23	56	52	30	0	17	1.45
4560010--4560117	27	4.0	27	67	18	80	50	30	0	18	1.47
4560018--4560210	67	2.9	66	74	13	171	48	31	1	18	1.57
4560082--4560128	21	2.3	20	92	3	76	55	31	0	12	1.38
4560140--4560194	26	2.1	26	86	0	74	49	29	1	20	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4562099--4562151	20	2.5	20	84	6	70	52	0	1	45	1.11
4562101--4562153	21	2.4	21	84	12	63	50	0	1	47	1.12
4568151--4568195	22	2.1	21	84	8	56	26	6	11	55	1.59
4574891--4574916	3	8.7	3	100	0	52	34	0	0	65	0.93
4585034--4585073	17	2.3	18	86	4	55	50	0	2	47	1.14
4585213--4585243	16	1.9	16	93	0	53	41	3	3	51	1.34
4585210--4585273	22	2.9	22	75	13	60	43	3	1	51	1.26
4585233--4585283	18	2.8	17	81	18	59	39	1	0	58	1.09
4585439--4585495	23	2.4	23	85	5	78	50	1	0	47	1.11
4586223--4586264	15	2.6	17	81	11	52	52	2	0	45	1.13
4589721--4589807	33	2.5	34	83	5	113	27	4	33	34	1.77
4589753--4589800	18	2.7	18	80	0	60	27	6	29	37	1.81
4590174--4590221	6	8.0	6	88	0	69	33	45	0	20	1.52
4593616--4593787	92	1.9	92	97	0	326	22	33	15	28	1.95
4593762--4593812	25	2.0	25	96	0	93	31	31	19	17	1.95
4593674--4594021	117	3.0	117	93	0	570	26	32	14	26	1.95
4593879--4593929	25	2.0	25	92	0	84	31	31	17	19	1.95
4594306--4594359	25	2.2	25	96	0	99	40	16	9	33	1.80
4598005--4598046	15	2.8	15	85	0	57	16	2	16	64	1.40
4597994--4598041	18	2.7	18	83	3	62	18	2	16	62	1.42
4598107--4598171	23	2.8	24	86	6	80	33	9	12	44	1.74
4611560--4611611	9	5.6	9	82	8	50	84	3	5	5	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4611566--4611611	20	2.3	20	88	0	65	86	2	4	6	0.75
4611566--4611612	9	5.0	9	82	10	58	85	2	4	8	0.81
4613118--4613175	24	2.4	25	85	2	73	29	15	17	37	1.90
4613582--4613786	95	2.1	97	80	7	231	35	14	13	36	1.86
4613744--4613976	126	1.8	126	83	8	305	34	14	14	36	1.86
4614268--4614348	22	3.7	22	81	3	83	35	22	8	33	1.85
4613956--4614326	119	3.1	118	79	8	432	34	17	14	33	1.90
4614388--4614567	22	8.0	22	70	8	121	32	18	12	36	1.89
4614390--4614552	67	2.4	68	88	3	231	33	19	12	34	1.90
4614565--4614691	37	3.5	36	81	7	132	12	15	20	51	1.76
4614733--4614775	16	2.6	16	77	3	50	79	11	2	6	1.02
4615012--4615054	20	2.1	20	86	4	59	67	4	0	27	1.10
4615025--4615097	9	7.4	9	75	17	65	76	2	2	17	1.02
4615025--4615097	20	3.7	18	75	15	56	76	2	2	17	1.02
4615059--4615108	17	2.8	17	73	26	50	78	2	6	14	1.03
4615026--4615086	31	2.0	31	87	6	88	77	3	1	18	0.99
4615070--4615113	21	2.2	19	88	8	61	79	2	6	11	1.01
4616092--4616352	119	2.2	119	84	2	335	34	17	14	33	1.90
4616304--4616384	22	3.7	22	83	3	92	37	23	7	32	1.83
4617476--4617615	14	9.7	14	66	11	52	50	27	1	20	1.57
4617504--4617574	22	3.2	21	70	7	52	50	28	1	19	1.56
4617578--4617676	28	3.5	27	78	12	83	48	30	2	19	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4617598--4617771	88	2.0	88	82	2	215	49	29	0	20	1.53
4617598--4617756	28	5.5	29	75	8	101	50	28	0	20	1.53
4617790--4617847	29	2.0	29	93	0	98	51	20	0	27	1.47
4619479--4619520	18	2.2	20	87	8	61	66	0	0	33	0.92
4619478--4619520	9	4.6	9	80	8	50	65	0	0	34	0.93
4620322--4620402	30	2.7	31	86	3	112	38	1	3	56	1.25
4622979--4623052	25	3.0	25	97	0	139	37	18	4	39	1.70
4623920--4624242	43	7.5	43	79	10	320	44	16	12	26	1.83
4623916--4624237	131	2.5	128	82	5	364	44	15	12	26	1.83
4624520--4624590	33	2.2	33	84	0	88	38	16	15	29	1.90
4635848--4635878	15	2.0	16	93	6	55	19	0	0	80	0.71
4636400--4636464	25	2.6	25	92	2	96	43	9	3	44	1.51
4636842--4636883	21	2.0	21	81	9	50	0	38	0	61	0.96
4637523--4637563	16	2.6	16	84	7	57	48	7	0	43	1.30
4637659--4637705	3	15.7	3	100	0	94	31	0	0	68	0.90
4637846--4637904	31	2.0	30	83	6	75	40	3	15	40	1.64
4638461--4638513	27	2.0	26	85	10	72	56	1	5	35	1.34
4638461--4638513	26	2.0	26	86	13	74	56	1	5	35	1.34
4639337--4639405	27	2.5	27	81	11	86	50	1	1	46	1.19
4644031--4644102	24	2.7	26	83	14	78	33	1	1	63	1.11
4644420--4644659	133	1.8	133	83	3	322	29	16	20	33	1.94
4652156--4652200	23	2.0	23	95	0	81	35	4	26	33	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4652214--4653346	355	3.2	355	85	3	1446	36	15	12	35	1.86
4655618--4655657	21	1.9	21	89	0	62	45	15	17	22	1.85
4657372--4657439	35	1.9	35	87	0	100	39	17	13	29	1.88
4658676--4658742	29	2.3	28	90	7	107	55	1	1	41	1.18
4660154--4660186	15	2.1	16	94	5	59	27	12	0	60	1.32
4664065--4664116	26	2.0	26	81	7	61	55	13	3	26	1.55
4664923--4665001	9	8.0	9	72	15	50	77	1	16	5	1.01
4664923--4665006	31	2.9	26	74	22	78	76	1	17	4	1.03
4673684--4673851	87	1.9	87	81	4	205	27	12	13	47	1.78
4673904--4674078	90	2.0	88	81	2	206	26	13	15	44	1.84
4673698--4674159	44	10.8	44	71	11	257	26	13	15	44	1.83
4673993--4674204	39	5.2	39	78	6	172	26	15	14	43	1.85
4673716--4674128	214	1.9	211	85	6	557	26	13	14	45	1.82
4673993--4674165	81	2.1	83	86	2	242	26	13	15	44	1.84
4674006--4674196	81	2.3	83	79	6	226	26	15	15	42	1.87
4674142--4674217	39	1.9	39	94	0	134	31	19	9	39	1.83
4674143--4674237	39	2.4	39	87	0	127	32	18	9	38	1.83
4675327--4675364	20	1.9	20	84	10	51	76	2	2	18	1.02
4675407--4675455	25	1.9	26	84	12	66	44	4	4	46	1.41
4675413--4675471	26	2.4	24	81	13	66	42	1	8	47	1.44
4675953--4676102	48	3.0	49	83	8	171	53	7	12	26	1.65
4679093--4679136	22	2.1	21	91	8	72	50	4	11	34	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4684879--4684912	16	2.1	16	88	5	50	55	5	26	11	1.58
4688479--4688600	34	3.6	33	77	8	93	30	9	18	41	1.81
4694606--4694650	21	2.1	21	84	8	56	33	22	15	28	1.95
4693623--4695280	828	2.0	829	84	3	2176	34	16	11	37	1.85
4696084--4696124	19	2.2	19	100	0	82	31	24	17	26	1.97
4696568--4696603	15	2.4	14	90	9	54	88	2	2	5	0.67
4697154--4697186	17	2.0	17	94	5	59	42	18	12	27	1.85
4697148--4698630	187	7.9	187	82	5	1547	36	12	10	41	1.77
4697148--4698625	373	4.0	372	83	4	1732	36	12	10	41	1.77
4697148--4698630	560	2.6	561	84	3	1817	36	12	10	41	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105