genome.fa.s135.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  9  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1627630--1627688	24	2.3	26	85	5	77	37	6	0	55	1.26
1627644--1627688	12	3.6	12	80	11	54	42	2	0	55	1.12
1628371--1628407	12	3.0	12	92	4	56	40	0	5	54	1.24
1629388--1629437	20	2.5	20	90	0	73	56	4	6	34	1.43
1634246--1634311	32	2.1	31	83	8	80	40	9	12	37	1.74
1641152--1641219	33	2.1	32	81	15	77	55	0	0	44	0.99
1641140--1641223	17	5.0	17	67	17	50	57	0	0	42	0.99
1641648--1641691	12	3.7	12	79	11	54	61	0	0	38	0.96
1641648--1641698	12	4.2	12	78	14	52	56	0	0	43	0.99
1641736--1641779	19	2.3	19	84	0	52	38	0	2	59	1.10
1644207--1644278	29	2.4	29	82	11	83	48	5	11	34	1.62
1649287--1649315	2	14.5	2	100	0	58	48	0	0	51	1.00
1650409--1650435	14	1.9	14	100	0	54	40	0	0	59	0.98
1656949--1656987	21	1.9	21	89	5	62	56	0	0	43	0.99
1656947--1656994	21	2.3	20	78	3	60	47	0	0	52	1.00
1657646--1657676	7	4.6	7	92	8	55	12	0	0	87	0.55
1657646--1657676	13	2.3	14	94	5	55	12	0	0	87	0.55
1660984--1661115	30	4.4	30	81	5	126	53	1	6	38	1.37
1663966--1664004	13	2.9	13	84	3	51	69	5	0	25	1.09
1663944--1664383	225	1.9	228	94	1	787	47	6	4	41	1.49
1668163--1668196	15	2.4	14	90	5	50	11	8	5	73	1.24
1673734--1673787	27	2.1	27	83	13	69	50	3	3	42	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1687879--1687903	1	25.0	1	100	0	50	0	0	0	100	0.00
1694003--1694104	50	2.0	50	90	0	159	39	7	17	35	1.79
1697836--1697866	15	2.1	15	93	0	53	51	0	0	48	1.00
1698287--1698330	17	2.8	16	86	10	63	52	4	0	43	1.22
1698553--1698601	20	2.5	20	93	0	80	61	10	0	28	1.29
1698654--1698695	2	22.0	2	80	9	52	47	2	0	50	1.14
1700180--1700219	16	2.5	16	95	0	71	40	0	7	52	1.30
1701440--1701469	13	2.3	13	94	0	51	33	6	0	60	1.23
1701742--1701797	29	2.0	27	86	13	78	51	0	1	46	1.11
1704335--1704376	3	14.3	3	90	5	68	69	2	0	28	1.01
1704813--1704850	16	2.5	15	84	12	51	63	0	0	36	0.95
1704809--1704866	23	2.6	23	81	10	59	56	0	0	43	0.99
1704969--1705069	28	3.5	28	75	12	75	43	1	3	50	1.32
1706199--1706247	24	2.0	24	88	0	71	61	2	0	36	1.08
1707242--1707290	20	2.4	21	76	10	57	51	0	4	44	1.20
1708024--1708065	14	3.0	14	83	10	59	66	0	0	33	0.92
1708031--1708062	15	2.1	15	94	0	55	71	0	0	28	0.86
1708481--1708523	20	2.2	20	95	0	77	37	9	20	32	1.85
1709668--1709742	29	2.6	27	78	14	78	48	2	1	48	1.24
1715647--1715716	29	2.4	30	85	7	90	42	2	10	44	1.52
1716437--1716479	21	2.2	19	87	8	59	39	0	0	60	0.97
1722536--1722563	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1725144--1725300	56	2.8	56	87	3	226	29	20	12	37	1.89
1733305--1733343	20	1.9	20	84	5	51	15	5	7	71	1.26
1734132--1734172	21	2.0	21	85	0	55	26	0	0	73	0.84
1734567--1734617	26	2.0	26	88	0	75	37	0	0	62	0.95
1735360--1735402	17	2.4	19	85	14	56	55	0	0	44	0.99
1735409--1735451	12	3.6	12	81	12	61	65	0	0	34	0.93
1735409--1735451	16	2.3	20	81	18	58	65	0	0	34	0.93
1736643--1736951	117	2.7	113	79	11	270	36	5	3	54	1.41
1737180--1737236	8	6.9	8	73	15	53	1	3	14	80	0.92
1737732--1737771	16	2.3	18	87	8	57	5	10	7	77	1.11
1737733--1737771	18	2.3	17	86	8	53	5	7	7	79	1.05
1738240--1738273	17	1.9	18	88	5	52	23	2	2	70	1.15
1739490--1739551	25	2.5	25	76	5	63	35	4	9	50	1.57
1739631--1739686	26	2.2	26	90	0	85	50	5	1	42	1.35
1744026--1744096	35	2.0	35	100	0	142	45	8	11	35	1.70
1750978--1751391	210	2.0	210	97	0	783	26	10	32	30	1.90
1751402--1751442	18	2.3	18	87	8	57	0	21	17	60	1.35
1751456--1751523	27	2.7	24	79	16	84	5	11	19	63	1.48
1753401--1753474	36	2.1	36	86	0	103	20	29	13	36	1.91
1757638--1757672	17	2.0	17	88	5	52	31	2	0	65	1.07
1757647--1757685	17	2.3	17	86	0	51	35	0	0	64	0.94
1757832--1757881	25	2.0	25	84	7	66	54	2	0	44	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1760512--1760547	2	18.5	2	88	5	56	52	0	47	0	1.00
1760623--1760655	2	16.5	2	100	0	66	51	0	0	48	1.00
1763171--1763202	5	6.6	5	92	7	57	65	0	34	0	0.93
1772038--1772103	29	2.2	30	83	5	89	39	7	1	51	1.40
1772407--1772448	7	5.9	7	81	15	50	85	2	11	0	0.68
1772407--1772448	17	2.3	19	84	12	61	85	2	11	0	0.68
1774385--1774418	2	17.0	2	93	0	59	50	2	0	47	1.16
1777837--1777895	3	18.7	3	83	10	73	32	0	5	62	1.17
1778210--1778254	24	1.9	24	86	13	67	37	2	2	57	1.23
1780478--1780510	16	2.1	16	94	0	57	36	0	21	42	1.53
1780484--1780517	16	2.1	16	88	0	50	35	2	20	41	1.68
1780568--1780620	28	1.9	28	85	11	74	33	5	11	49	1.62
1784030--1784077	2	24.0	2	100	0	96	50	0	50	0	1.00
1786330--1786376	24	1.9	25	86	4	69	44	4	8	42	1.54
1789470--1789550	8	9.9	8	74	14	58	81	3	7	7	0.97
1789478--1789537	15	3.9	15	77	16	52	81	5	8	5	0.97
1789469--1789549	18	4.4	18	76	15	76	81	3	8	6	0.97
1790165--1790353	79	2.4	79	83	3	220	38	6	22	32	1.80
1791007--1791759	43	17.3	43	76	6	478	25	11	16	45	1.81
1791019--1791759	131	5.7	130	77	8	567	25	11	16	45	1.81
1791005--1791759	88	8.7	85	75	8	346	25	11	16	45	1.81
1791218--1791738	87	6.0	86	78	6	286	26	11	16	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1791962--1791992	14	2.1	15	94	5	55	83	0	3	12	0.75
1793934--1793967	3	11.0	3	87	6	50	35	2	0	61	1.11
1796331--1796356	2	13.0	2	100	0	52	50	0	50	0	1.00
1797681--1797725	17	2.8	16	86	6	56	31	0	8	60	1.28
1812001--1812026	6	4.3	6	100	0	52	0	0	30	69	0.89
1812608--1812643	11	3.0	13	76	23	51	27	5	0	66	1.13
1817671--1817722	26	2.0	26	96	0	95	42	25	15	17	1.88
1821618--1821904	100	2.9	100	89	2	450	47	16	9	26	1.77
1821618--1821904	101	2.9	99	89	3	448	47	16	9	26	1.77
1823275--1823304	6	5.0	6	91	0	51	30	33	20	16	1.94
1823653--1823828	87	2.0	88	97	1	336	39	8	2	50	1.46
1840568--1840616	17	2.9	16	79	11	53	75	4	2	18	1.06
1842904--1842942	19	2.0	21	90	10	64	66	0	0	33	0.92
1851961--1852023	3	21.0	3	100	0	126	66	0	0	33	0.92
1853518--1853731	104	2.0	105	91	0	349	47	12	13	26	1.79
1853673--1854092	43	9.9	42	77	9	345	44	14	14	26	1.83
1853661--1854092	85	5.1	86	80	5	439	44	14	14	26	1.84
1853661--1854094	128	3.4	128	80	3	471	44	14	14	26	1.84
1854367--1854573	65	3.2	64	81	3	225	47	12	18	21	1.82
1854568--1854622	20	2.6	21	83	11	67	47	12	7	32	1.69
1854670--1854740	37	1.9	37	82	5	90	43	12	7	36	1.70
1854975--1855127	80	1.9	80	85	2	209	45	10	9	34	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1856160--1856184	13	1.9	13	100	0	50	16	12	0	72	1.13
1856141--1856183	20	2.3	18	88	11	61	13	6	0	79	0.93
1856157--1856210	22	2.5	22	75	6	56	12	11	0	75	1.04
1856141--1856210	31	2.3	31	76	18	76	12	10	0	77	1.00
1856469--1856522	19	2.8	19	75	10	56	7	14	0	77	0.97
1860451--1860484	3	11.3	3	100	0	68	67	0	0	32	0.91
1861715--1861777	18	3.5	18	82	12	76	69	11	3	15	1.29
1864257--1864295	18	2.2	18	85	0	51	56	0	12	30	1.37
1867807--1867844	6	6.5	6	82	17	53	44	0	0	55	0.99
1868011--1868055	19	2.2	21	84	7	58	62	4	0	33	1.15

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105