genome.fa.s135.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  35  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6769678--6769732	28	2.0	28	88	0	83	32	20	25	21	1.97
6769964--6770034	32	2.2	32	85	5	99	30	18	15	35	1.92
6770942--6770991	16	3.2	15	83	8	64	4	20	0	76	0.95
6770951--6770999	20	2.6	18	81	15	55	4	18	0	77	0.92
6775482--6775526	19	2.5	17	89	7	63	0	15	2	82	0.77
6775482--6775526	9	5.0	9	78	10	56	0	15	2	82	0.77
6777485--6777570	35	2.5	35	94	0	145	24	0	26	48	1.51
6777488--6777534	21	2.2	21	84	0	58	21	0	29	48	1.50
6777500--6777570	21	3.7	21	68	24	57	23	0	26	49	1.51
6777586--6777653	28	2.4	28	87	4	102	22	0	26	51	1.48
6777674--6777743	36	1.9	36	88	2	104	15	0	22	61	1.34
6777864--6777914	3	17.0	3	95	0	93	33	1	0	64	1.05
6778009--6778074	3	22.3	3	78	9	73	31	3	1	63	1.19
6781068--6781102	18	1.9	18	94	0	61	34	0	0	65	0.93
6781427--6781451	6	4.2	6	100	0	50	84	0	16	0	0.63
6782705--6782776	29	2.4	29	86	4	81	45	2	5	45	1.41
6782718--6782776	29	2.0	29	90	0	91	45	3	5	45	1.42
6784264--6784313	15	3.6	14	72	22	52	52	0	0	48	1.00
6784255--6784312	25	2.4	22	79	20	71	53	0	0	46	1.00
6784256--6784309	27	2.1	25	86	13	74	50	0	0	50	1.00
6784286--6784324	16	2.6	14	84	8	51	53	0	0	46	1.00
6784263--6784315	27	2.0	27	85	7	72	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6784390--6784436	18	2.8	17	81	12	53	40	0	2	57	1.11
6785301--6785328	14	2.0	14	100	0	56	42	0	0	57	0.99
6785397--6785441	21	2.1	22	91	4	74	62	6	0	31	1.21
6785780--6785818	17	2.4	17	86	4	53	46	2	0	51	1.14
6785871--6785904	6	5.7	6	96	0	59	26	2	0	70	1.01
6789714--6789792	33	2.6	31	80	11	83	54	3	0	41	1.18
6796888--6797079	24	8.1	24	65	16	71	31	4	9	54	1.53
6796897--6797013	20	6.2	20	75	15	70	31	3	11	53	1.52
6796859--6796979	52	2.4	49	89	8	174	29	4	10	54	1.56
6796889--6796935	20	2.3	21	75	10	53	29	4	10	55	1.53
6796938--6797026	21	4.1	21	71	13	72	33	1	10	55	1.41
6796957--6797073	47	2.5	47	83	5	141	34	3	8	53	1.48
6797063--6797202	32	4.4	32	75	3	129	29	5	12	52	1.63
6797067--6797256	64	3.1	62	77	15	189	28	4	13	53	1.58
6797153--6797278	58	2.2	57	80	8	141	27	3	12	55	1.55
6797298--6797336	19	2.1	19	90	0	60	28	5	12	53	1.60
6797305--6797367	24	2.6	24	85	7	83	34	3	11	50	1.54
6797487--6797596	18	6.0	19	75	20	94	34	5	10	49	1.61
6797652--6797701	25	2.0	24	81	11	57	28	4	16	52	1.61
6799554--6799661	4	26.5	4	76	8	85	31	1	0	65	1.09
6799554--6799666	24	4.8	24	83	11	137	32	1	0	64	1.10
6800537--6800670	62	2.2	62	87	4	191	51	5	8	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6800537--6800670	61	2.2	59	84	10	171	51	5	8	33	1.58
6800571--6800700	62	2.1	62	80	5	138	53	6	7	32	1.54
6800598--6800769	76	2.2	76	87	8	242	52	6	8	31	1.57
6804144--6804189	15	2.8	17	87	9	69	17	19	10	52	1.74
6811415--6811444	15	1.9	16	93	6	53	86	0	0	13	0.57
6812136--6812190	16	2.9	19	76	23	62	25	18	18	38	1.93
6812145--6812201	16	3.5	16	92	2	87	24	19	19	36	1.94
6812450--6812783	42	7.9	42	77	7	202	26	12	16	44	1.83
6812481--6812720	84	2.8	84	79	10	224	27	11	15	45	1.80
6812539--6812843	42	7.0	45	80	5	227	25	12	17	45	1.83
6812668--6812839	87	1.9	88	82	3	211	22	13	19	44	1.85
6813028--6813055	6	4.7	6	100	0	56	17	0	14	67	1.22
6813051--6813125	4	19.0	4	71	15	50	29	2	0	68	1.04
6813059--6813149	27	3.4	27	81	14	93	30	3	1	64	1.16
6813948--6813986	11	3.5	11	89	3	51	12	5	0	82	0.83
6814044--6814183	69	2.0	68	86	4	192	52	7	7	31	1.59
6814815--6814940	63	2.0	62	89	1	189	51	8	3	36	1.49
6817586--6817698	57	2.0	57	89	6	176	52	12	13	22	1.73
6818470--6818525	25	2.3	24	84	9	69	30	1	25	42	1.65
6818628--6818670	19	2.3	19	95	0	77	34	0	11	53	1.37
6821056--6821085	15	1.9	16	93	6	53	20	0	3	76	0.92
6821324--6821355	17	1.9	16	93	6	55	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6821324--6821361	17	2.2	17	86	9	51	44	0	2	52	1.14
6821418--6821464	17	2.9	16	81	12	51	65	0	4	29	1.11
6821426--6821464	3	13.3	3	89	5	62	66	0	2	30	1.05
6821470--6821527	20	2.8	21	82	12	66	75	8	0	15	1.02
6821470--6821529	26	2.4	25	86	5	84	76	8	0	15	1.00
6821470--6821536	26	2.6	25	81	6	71	77	7	1	13	1.04
6822394--6822474	42	2.0	42	82	7	103	37	11	17	34	1.85
6822623--6822715	41	2.3	39	82	14	109	40	12	12	33	1.82
6822689--6822832	75	1.9	75	84	5	193	37	13	20	29	1.90
6822747--6822818	34	2.2	33	90	5	117	34	15	20	29	1.93
6829740--6829782	20	2.1	20	83	12	52	51	0	18	30	1.47
6837875--6837936	3	20.7	3	100	0	124	66	0	0	33	0.92
6839141--6839180	17	2.4	17	91	0	62	82	7	7	2	0.92
6839141--6839187	17	2.7	17	86	3	58	78	10	8	2	1.04
6839457--6839492	6	5.8	6	96	3	63	69	0	30	0	0.89
6839457--6839492	19	1.9	18	88	5	54	69	0	30	0	0.89
6843302--6843345	3	14.7	3	100	0	88	31	0	0	68	0.90
6844092--6844141	12	4.2	12	76	16	50	18	2	2	78	0.95
6844200--6844432	60	3.9	59	81	10	237	47	5	9	37	1.59
6844200--6844432	61	3.9	60	82	9	241	47	5	9	37	1.59
6844407--6844504	45	2.2	45	81	7	110	51	6	9	33	1.59
6844335--6844541	105	2.0	103	84	7	267	46	6	11	36	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6844441--6844669	60	3.8	60	77	8	236	50	6	11	31	1.64
6854873--6854903	15	2.1	14	94	5	53	51	3	25	19	1.62
6855223--6855273	24	2.2	23	89	10	77	84	1	9	3	0.83
6856283--6856361	40	2.0	40	89	0	122	27	11	21	39	1.88
6856355--6856445	41	2.2	42	84	2	121	19	17	14	48	1.81
6856451--6856522	37	1.9	37	85	0	99	23	11	12	52	1.71
6856769--6856846	3	26.0	3	87	5	113	30	3	0	65	1.10
6857046--6857084	21	1.9	21	84	5	53	74	12	12	0	1.08
6857647--6857841	61	3.2	61	79	13	206	47	4	8	39	1.54
6857676--6858048	57	6.4	57	78	9	303	49	5	9	35	1.59
6858119--6858155	16	2.2	16	90	4	56	2	10	0	86	0.67
6859183--6859208	2	13.0	2	100	0	52	50	0	0	50	1.00
6861404--6861434	15	2.1	15	100	0	62	48	0	0	51	1.00
6861654--6861681	2	14.0	2	100	0	56	50	0	0	50	1.00
6862372--6862418	18	2.7	18	80	6	53	72	4	0	23	1.02
6862388--6862435	23	2.1	23	88	7	71	68	2	0	29	1.01
6862414--6862450	19	1.9	20	88	5	58	59	2	0	37	1.12
6862584--6862633	19	2.5	21	83	6	68	44	4	6	46	1.47
6862584--6862638	20	2.8	18	76	15	56	40	3	5	50	1.43
6862780--6862927	31	4.9	29	74	13	95	40	2	4	53	1.31
6862866--6862911	19	2.4	19	85	7	58	45	2	2	50	1.26
6862792--6862919	11	12.6	10	68	17	50	42	1	4	51	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6862807--6862927	30	4.0	29	75	11	109	41	1	4	52	1.33
6862789--6862928	10	13.8	10	71	8	77	41	1	4	52	1.30
6862933--6863011	18	4.2	19	80	6	90	40	2	5	51	1.37
6862931--6863011	38	2.1	39	82	11	105	40	2	4	51	1.37
6873289--6873322	13	2.7	12	90	9	50	23	0	0	76	0.79
6873520--6873598	38	2.1	38	83	4	97	25	10	18	45	1.81
6873805--6873835	11	2.7	11	95	5	53	32	0	0	67	0.91
6881359--6881424	32	2.1	32	97	0	123	18	22	19	39	1.92
6882210--6882269	26	2.3	27	82	11	79	23	11	6	58	1.57
6883532--6883570	19	2.1	19	90	4	62	48	25	5	20	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105