genome.fa.s135.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  4  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
295432--295478	21	2.1	23	85	14	64	65	2	2	29	1.15
312589--312624	17	2.1	18	94	5	65	80	0	16	2	0.83
313646--313694	21	2.4	19	80	16	53	48	2	0	48	1.12
323079--323116	18	2.1	18	95	0	67	36	2	23	36	1.69
325570--325599	14	2.1	14	93	0	51	33	6	0	60	1.23
331820--331845	3	8.7	3	100	0	52	0	0	30	69	0.89
331882--331916	17	2.0	18	88	5	54	28	2	2	65	1.21
332406--332500	30	3.2	30	76	8	104	43	6	2	48	1.40
332529--332604	30	2.6	30	87	6	111	56	3	5	34	1.40
332654--332690	3	12.3	3	94	0	65	29	0	2	67	1.04
333174--333205	16	2.0	16	93	0	55	18	18	9	53	1.71
333248--333298	14	3.5	15	78	10	52	33	0	3	62	1.13
333271--333321	19	2.7	20	79	11	63	35	0	1	62	1.06
333286--333337	23	2.3	23	93	0	86	36	1	1	59	1.19
333285--333394	23	4.5	23	73	15	71	40	3	2	52	1.33
335411--335450	5	8.0	5	94	0	71	2	20	20	57	1.52
340617--340662	16	2.8	17	83	9	60	28	2	2	67	1.14
341832--341893	31	2.1	30	82	14	76	45	0	1	53	1.10
341542--341945	221	1.8	220	88	3	616	35	7	8	47	1.63
344572--344629	16	3.8	16	75	9	57	50	3	3	43	1.36
344953--344979	6	4.5	6	100	0	54	51	33	0	14	1.43
348063--348095	1	33.0	1	93	0	57	3	0	96	0	0.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350467--350495	4	7.2	4	100	0	58	51	24	0	24	1.48
354177--354210	3	11.3	3	100	0	68	67	0	32	0	0.91
355123--355170	3	16.0	3	100	0	96	33	33	0	33	1.58
355169--355198	3	10.0	3	92	0	51	66	3	0	30	1.07
355443--355473	4	7.8	4	92	0	53	51	25	0	22	1.48
361587--361629	19	2.4	19	85	11	56	55	0	0	44	0.99
361699--361742	18	2.4	18	96	0	79	22	18	4	54	1.61
362392--362477	34	2.5	34	83	3	102	40	5	3	50	1.44
373682--373725	19	2.5	17	88	7	61	36	2	4	56	1.32
375366--375403	2	19.0	2	100	0	76	50	0	0	50	1.00
376019--376046	6	4.7	6	100	0	56	14	0	0	85	0.59
376252--376281	14	2.1	15	93	6	53	13	0	10	76	1.01
376369--376407	20	2.0	20	89	0	60	25	2	10	61	1.41
376982--377022	21	2.0	21	100	0	82	43	4	9	41	1.59
376980--377032	21	2.6	21	87	3	72	47	7	9	35	1.64
377376--377443	30	2.3	30	87	2	93	44	0	0	55	0.99
377416--377467	22	2.5	22	93	6	90	50	0	0	50	1.00
382230--382289	25	2.4	25	85	0	93	20	26	18	35	1.95
385999--386042	22	2.0	22	86	0	61	36	9	11	43	1.72
396289--396319	15	2.1	15	100	0	62	19	32	12	35	1.90
401665--401763	33	3.0	33	98	0	189	25	12	14	48	1.78
413142--413301	77	2.1	77	80	6	173	51	1	1	46	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413718--413762	22	2.0	22	100	0	90	22	4	22	51	1.66
415789--415890	34	3.0	34	100	0	204	35	35	11	17	1.87
420000--420038	11	3.5	11	78	0	51	53	0	0	46	1.00
420331--420381	25	2.0	25	85	7	68	41	9	7	41	1.67
427888--427917	2	15.0	2	100	0	60	50	0	50	0	1.00
428360--428516	75	2.1	75	84	6	214	46	1	1	50	1.17
428458--428532	24	3.2	24	71	19	68	57	1	0	41	1.07
428960--429004	22	2.0	22	95	0	81	20	6	22	51	1.70
429295--429347	22	2.4	22	93	6	90	49	0	0	50	1.00
435175--435213	11	3.5	11	78	0	51	53	0	0	46	1.00
435507--435557	25	2.0	25	85	7	68	41	9	7	41	1.67
450142--450174	12	2.5	14	80	19	52	63	15	21	0	1.30
454814--454843	2	15.0	2	100	0	60	0	50	0	50	1.00
455270--455337	18	3.7	18	73	11	57	41	0	7	51	1.30
455318--455369	19	2.6	19	78	9	50	36	3	1	57	1.28
455451--455490	21	2.0	20	85	5	53	42	0	0	57	0.98
455492--455541	18	2.7	18	84	9	57	60	0	2	38	1.09
463248--463272	4	6.2	4	100	0	50	0	24	0	76	0.80
463344--463517	92	1.9	92	89	0	267	29	25	8	36	1.85
474196--474246	9	5.4	9	81	9	57	62	1	3	31	1.24
474191--474235	15	3.1	15	81	18	60	62	0	4	33	1.15
474196--474249	19	2.8	19	83	8	65	62	1	3	31	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
474196--474242	15	3.3	15	80	17	55	61	2	4	31	1.27
474204--474278	19	3.9	19	81	6	62	57	6	6	29	1.50
474344--474409	26	2.6	24	79	11	69	59	4	1	34	1.27
474696--474736	19	2.2	18	91	4	64	63	0	0	36	0.95
474705--474736	10	3.3	10	91	8	57	62	0	0	37	0.95
477775--477810	2	18.0	2	94	0	63	50	2	0	47	1.15
480438--480470	14	2.3	15	89	5	50	75	0	0	24	0.80
482128--483007	267	3.3	268	92	2	1402	27	23	21	26	1.99
491403--491444	21	2.0	22	81	13	52	69	16	9	4	1.33
492183--492228	21	2.2	21	100	0	92	45	6	0	47	1.28
498271--498317	3	15.7	3	95	0	85	34	2	0	63	1.06
498661--498905	23	10.3	22	70	19	97	54	1	1	43	1.16
498687--498931	72	3.4	71	81	15	258	55	1	1	42	1.15
498742--498926	85	2.1	87	94	4	322	55	1	1	42	1.14
498981--499016	14	2.6	13	91	8	54	44	0	0	55	0.99
499017--499057	16	2.7	15	85	7	55	48	2	0	48	1.14
499025--499090	26	2.6	26	90	4	100	48	1	0	50	1.10
499020--499090	9	8.2	9	71	20	53	49	1	0	49	1.09
503542--503575	12	2.8	12	90	0	50	82	5	11	0	0.83
508599--508638	16	2.6	16	92	4	64	62	0	0	37	0.95
513623--513762	70	2.0	70	88	0	208	35	18	10	35	1.84
514703--514835	61	2.2	61	93	1	223	45	12	6	35	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
515429--515463	18	1.9	18	88	0	52	54	0	8	37	1.31
516919--516971	21	2.4	22	93	6	90	50	0	0	49	1.00
525140--525200	27	2.4	27	74	17	67	39	6	0	54	1.27
525129--525206	29	2.8	27	69	14	68	37	5	0	57	1.21
526322--526366	12	3.2	14	87	12	58	51	0	0	48	1.00
526320--526366	13	3.3	15	82	14	55	51	0	0	48	1.00
526322--526368	14	3.5	13	83	13	60	48	0	0	51	1.00
526322--526376	28	2.0	26	83	13	67	45	0	0	54	0.99
526326--526384	14	4.1	14	75	18	50	40	0	0	59	0.97
526351--526402	11	4.5	12	74	16	56	40	0	0	59	0.97
526360--526409	22	2.4	21	81	12	59	42	0	0	58	0.98
526905--526970	25	2.8	23	73	24	66	43	0	1	54	1.09
526941--527013	35	2.1	36	84	7	96	45	0	0	54	0.99
527109--527159	21	2.4	21	90	0	75	39	7	0	52	1.30
527935--527975	13	2.9	15	82	13	52	39	0	0	60	0.96
531758--531822	2	32.5	2	86	6	78	49	6	1	43	1.37
534220--534266	20	2.3	20	85	0	67	59	0	0	40	0.97
538669--538723	21	2.7	21	81	15	71	43	0	0	56	0.99
538668--538716	11	4.5	12	73	21	54	42	0	0	57	0.99
539218--539283	25	2.8	23	73	24	66	43	0	1	54	1.09
539254--539326	35	2.1	36	84	7	96	45	0	0	54	0.99
539270--539348	27	2.8	29	74	14	76	40	1	0	58	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
539418--539468	21	2.4	21	83	0	57	37	5	1	54	1.36
540244--540283	13	3.0	14	85	10	57	40	0	0	60	0.97
544055--544119	2	32.5	2	86	6	78	49	6	1	43	1.37
550589--550638	16	3.0	16	79	5	55	40	0	2	58	1.10
550626--550676	21	2.5	21	96	3	95	50	0	0	49	1.00
550806--550840	17	2.1	17	94	0	61	28	28	17	25	1.97
559150--559213	14	4.3	15	72	18	62	48	0	0	51	1.00
559137--559224	44	2.0	44	91	4	142	45	0	2	52	1.13
559914--559953	13	3.0	13	81	3	53	22	0	5	72	1.04
559914--559953	20	2.0	20	95	0	71	22	0	5	72	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105