genome.fa.s135.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  37  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7065304--7065356	19	2.7	20	82	5	63	35	0	5	58	1.22
7065413--7065506	18	4.8	18	77	12	80	27	2	7	62	1.33
7065434--7065506	9	7.7	9	73	21	60	26	1	8	64	1.30
7065370--7065515	39	3.5	40	79	13	138	31	2	6	59	1.35
7065048--7065506	10	46.5	10	66	17	86	34	2	5	56	1.37
7065434--7065506	19	3.8	18	84	10	83	26	1	8	64	1.30
7066484--7066555	3	25.0	3	73	8	60	29	1	1	68	1.07
7066525--7066558	6	5.7	6	100	0	68	14	0	0	85	0.60
7067409--7067449	22	1.9	21	85	5	55	12	2	4	80	0.97
7072512--7072603	22	4.4	22	77	13	95	16	2	32	48	1.58
7072532--7072655	37	3.3	37	84	7	144	16	2	29	50	1.58
7072628--7072654	14	1.9	14	100	0	54	14	3	29	51	1.60
7072645--7072682	16	2.4	16	91	8	60	13	0	47	39	1.42
7072512--7072688	76	2.4	74	74	10	171	16	1	33	48	1.57
7072512--7072716	98	2.1	98	80	5	218	17	1	32	48	1.59
7072675--7072775	29	3.5	28	72	15	80	23	0	26	48	1.57
7072697--7072740	21	2.0	22	86	4	63	25	0	29	45	1.54
7072710--7072781	22	3.3	21	72	14	58	22	0	30	47	1.52
7075105--7075138	13	2.8	12	91	8	52	0	0	17	82	0.67
7075105--7075138	6	5.7	6	90	10	52	0	0	17	82	0.67
7075380--7075656	36	7.8	36	69	10	149	40	12	27	19	1.88
7075412--7075715	71	4.3	70	76	1	239	38	14	28	18	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7075374--7075656	107	2.6	107	75	2	316	40	13	27	18	1.88
7075412--7075715	142	2.1	143	80	4	353	38	14	28	18	1.90
7075835--7076087	34	7.4	33	74	8	202	47	11	18	22	1.81
7075823--7076093	69	3.9	69	84	2	339	46	11	18	22	1.81
7075919--7076114	35	5.7	34	72	10	121	44	14	19	21	1.86
7077473--7077558	10	9.0	9	75	17	68	5	11	1	81	0.92
7077473--7077527	12	4.6	12	82	15	69	3	12	0	83	0.77
7077474--7077560	11	7.6	12	71	13	60	5	10	1	82	0.88
7078286--7078318	16	2.1	16	88	5	50	75	0	15	9	1.03
7078494--7078717	58	3.9	58	81	6	244	37	11	6	45	1.65
7078476--7078717	57	4.2	58	78	4	235	37	10	7	45	1.67
7078476--7078717	115	2.1	113	82	7	292	37	10	7	45	1.67
7078725--7078752	6	4.7	6	100	0	56	85	0	0	14	0.59
7078778--7078843	3	21.0	3	81	9	78	66	1	3	28	1.15
7079284--7079314	11	2.8	11	90	0	53	61	0	0	38	0.96
7079274--7079312	11	3.5	11	85	0	51	66	5	0	28	1.12
7079274--7079328	22	2.5	22	82	5	58	58	7	0	34	1.26
7079540--7079685	44	3.3	44	87	4	197	44	16	13	25	1.84
7080689--7080720	12	2.8	12	95	4	57	0	15	0	84	0.63
7087468--7087629	57	2.8	57	84	6	186	37	12	8	41	1.73
7087529--7087646	57	2.1	55	88	4	173	38	8	6	46	1.61
7087654--7087689	17	2.1	18	94	5	65	75	0	8	16	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7087706--7087773	3	22.0	3	91	5	109	63	1	2	32	1.18
7088166--7088232	35	1.9	35	90	0	107	59	7	1	31	1.34
7088467--7088556	36	2.6	36	78	8	105	66	2	2	28	1.15
7099734--7099825	22	4.4	22	72	18	79	14	3	30	52	1.57
7099882--7100008	13	8.9	14	67	18	59	19	0	30	48	1.54
7099852--7100006	29	5.4	28	73	14	111	17	0	32	49	1.52
7099929--7099970	21	2.0	22	85	4	59	21	0	30	47	1.51
7099881--7100006	57	2.2	56	83	9	157	19	0	30	49	1.54
7104049--7104094	23	2.0	23	83	4	58	56	8	6	28	1.54
7104235--7104273	17	2.2	19	86	9	55	35	12	5	46	1.65
7104654--7104689	7	5.1	7	100	0	72	27	27	13	30	1.94
7105583--7105652	34	2.1	34	100	0	140	41	14	5	38	1.69
7106635--7106759	62	2.0	63	89	4	191	49	15	4	31	1.62
7107548--7107608	31	2.0	30	90	3	95	49	1	1	47	1.21
7107742--7107771	2	15.5	2	93	6	53	50	0	0	50	1.00
7117578--7117615	20	1.9	20	89	10	60	42	5	2	50	1.39
7120664--7120707	22	2.0	22	90	0	70	45	13	9	31	1.75
7124548--7124597	26	2.0	26	88	7	77	56	8	16	20	1.65
7131665--7131831	82	2.0	82	96	0	307	41	13	10	34	1.80
7134765--7134789	2	12.5	2	100	0	50	0	48	0	52	1.00
7136921--7137229	154	2.0	152	85	3	415	33	10	17	39	1.84
7141334--7141378	21	2.2	20	84	4	54	42	8	15	33	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7143257--7143290	16	2.1	16	88	5	50	26	2	11	58	1.47
7143280--7143325	21	2.2	21	88	0	65	34	8	10	45	1.70
7144042--7144097	17	3.3	16	83	11	67	60	10	14	14	1.58
7146016--7146057	22	1.9	22	90	0	66	38	4	9	47	1.57
7146159--7146226	22	2.9	23	79	10	84	42	13	4	39	1.64
7146451--7146529	40	2.0	41	85	7	108	39	8	5	46	1.57
7146594--7146652	22	2.7	22	83	0	73	33	8	10	47	1.68
7147797--7147852	12	4.9	11	78	10	51	82	0	14	3	0.81
7147797--7147854	20	2.8	22	82	10	68	82	0	13	3	0.79
7147796--7147854	31	1.9	31	86	10	86	83	0	13	3	0.78
7147796--7147855	13	4.7	12	75	19	50	81	0	15	3	0.81
7149290--7149318	3	9.7	3	100	0	58	34	0	0	65	0.93
7150389--7150435	16	2.8	17	90	3	69	14	12	10	61	1.56
7154714--7154769	21	2.7	21	72	16	62	50	5	12	32	1.63
7156724--7156779	29	1.9	29	96	0	103	23	21	5	50	1.69
7170078--7170146	36	1.9	36	91	5	113	39	24	14	21	1.91
7170708--7170853	46	3.2	44	73	12	127	31	9	15	43	1.78
7171106--7171153	19	2.6	18	78	21	62	79	8	2	10	1.02
7171119--7171168	27	1.9	27	84	8	68	78	8	4	10	1.09
7172459--7172508	25	2.0	25	84	4	64	76	0	22	2	0.89
7172529--7172578	17	2.9	17	78	18	50	74	2	24	0	0.93
7172532--7172608	27	2.8	26	79	11	75	75	2	19	2	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7174619--7174687	22	3.1	22	87	0	93	37	14	7	40	1.74
7174817--7174897	27	2.9	27	85	5	81	40	13	4	40	1.66
7174837--7175187	22	15.8	22	68	13	110	35	10	6	47	1.64
7174845--7174898	27	2.0	27	100	0	108	37	14	7	40	1.74
7175026--7175186	65	2.5	66	78	4	173	35	8	6	49	1.59
7175395--7175443	22	2.2	22	85	0	62	44	6	4	44	1.47
7175405--7175466	22	2.9	21	80	4	70	45	8	1	45	1.42
7179417--7179481	34	2.0	34	81	6	80	50	1	1	46	1.20
7181282--7181603	161	2.0	161	97	0	608	38	16	13	31	1.88
7185460--7185492	16	2.1	16	100	0	66	39	0	0	60	0.97
7187878--7187916	20	2.0	20	95	5	71	76	5	0	17	0.96
7193654--7193696	21	2.1	20	87	12	61	32	20	0	46	1.51
7196021--7196065	19	2.5	18	82	10	56	64	0	11	24	1.26
7196026--7196066	19	2.2	19	90	0	64	65	0	12	21	1.25
7196026--7196066	10	4.3	10	78	9	50	65	0	12	21	1.25
7200167--7200213	21	2.2	21	100	0	94	38	10	17	34	1.84
7201014--7201095	41	2.0	41	97	0	155	41	8	19	30	1.81
7203534--7203707	30	5.9	30	77	3	131	48	28	1	21	1.60
7203599--7203707	28	3.8	27	76	20	87	49	23	1	24	1.60
7203705--7203755	22	2.3	22	100	0	102	39	23	7	29	1.83
7205647--7205671	9	2.8	9	100	0	50	84	8	8	0	0.79
7206927--7206953	9	3.0	9	100	0	54	33	0	33	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7209814--7209847	15	2.3	15	90	10	52	88	2	8	0	0.62
7211312--7211417	23	4.7	22	77	9	115	37	23	16	21	1.93
7211312--7211417	45	2.4	45	85	9	153	37	23	16	21	1.93
7211651--7211848	32	6.2	32	71	11	120	34	20	15	29	1.93
7211675--7211875	32	6.3	32	70	12	128	32	19	16	30	1.95
7211676--7211816	64	2.2	64	81	6	162	34	20	15	29	1.94
7211577--7211794	95	2.3	94	83	3	260	34	20	14	30	1.92
7211652--7211981	159	2.1	159	87	2	475	32	18	16	32	1.94
7212166--7212360	36	5.4	36	72	9	117	19	22	11	46	1.82
7212233--7212332	37	2.7	37	83	4	105	17	20	14	49	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105