genome.fa.s135.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  18  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3789012--3789044	14	2.2	16	89	10	52	39	0	0	60	0.97
3792646--3792692	23	2.1	23	84	4	60	51	2	2	44	1.25
3792646--3792698	22	2.3	23	83	3	63	50	1	1	45	1.23
3793118--3793160	3	14.3	3	100	0	86	65	0	0	34	0.93
3808222--3808267	22	2.1	22	91	0	74	60	2	15	21	1.45
3808599--3808632	2	17.0	2	93	0	59	52	0	0	47	1.00
3809575--3809631	24	2.4	24	96	0	105	36	21	12	29	1.90
3815027--3815068	20	2.1	20	90	0	66	52	11	16	19	1.74
3825038--3825109	36	2.0	35	84	7	92	40	2	0	56	1.13
3825391--3825415	12	2.1	12	100	0	50	48	0	0	52	1.00
3826315--3826364	26	1.9	26	95	0	91	44	10	14	32	1.78
3826324--3826365	13	3.2	13	80	12	59	45	11	14	28	1.80
3827017--3827116	30	3.4	29	77	12	80	37	15	5	43	1.68
3829909--3829941	15	2.1	16	88	5	50	51	0	9	39	1.34
3841517--3841564	6	7.7	6	84	9	51	2	0	10	87	0.62
3843165--3843199	17	2.0	18	94	5	63	0	40	28	31	1.57
3843750--3843802	12	4.2	12	77	15	54	79	0	18	1	0.83
3843747--3843789	11	3.7	12	85	14	63	79	0	20	0	0.74
3846247--3846519	58	4.7	57	81	5	316	36	13	7	42	1.73
3846247--3846501	114	2.2	117	86	4	358	36	13	7	42	1.74
3846536--3846618	5	15.8	5	75	18	64	77	0	4	18	0.95
3846536--3846618	17	4.9	17	77	8	89	77	0	4	18	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3846583--3846673	15	5.7	17	70	19	63	71	1	2	25	1.04
3846588--3846674	11	7.9	11	71	22	51	71	1	2	25	1.05
3846998--3847157	87	1.8	88	79	4	189	30	17	20	31	1.95
3847525--3847578	17	3.1	17	76	15	56	77	0	9	12	0.98
3847535--3847578	12	3.8	12	82	14	56	77	0	6	15	0.97
3847560--3847774	4	55.8	4	64	18	66	66	2	3	27	1.23
3847562--3847632	28	2.4	29	81	11	81	63	1	4	30	1.22
3847577--3847718	28	5.1	28	69	22	88	61	2	3	31	1.27
3847603--3847658	22	2.5	22	77	11	69	62	3	3	30	1.29
3847560--3847773	7	29.9	7	68	19	63	65	2	3	27	1.23
3847582--3847710	50	2.6	51	79	18	162	61	3	3	31	1.30
3847604--3847687	18	4.8	18	71	20	54	60	4	3	30	1.34
3847672--3847769	25	3.9	25	72	20	71	69	3	3	24	1.17
3847954--3848099	42	3.4	44	82	10	178	39	21	15	23	1.91
3847995--3848128	41	3.3	40	80	9	139	38	21	14	25	1.92
3853995--3854045	15	3.4	15	89	5	68	1	27	9	60	1.39
3859661--3859704	6	7.5	6	84	5	63	79	0	4	15	0.89
3859649--3859704	17	3.2	16	85	14	67	78	0	3	17	0.89
3859649--3859704	23	2.3	23	87	6	76	78	0	3	17	0.89
3860634--3860705	6	12.0	6	80	14	78	77	0	4	18	0.92
3860634--3860705	11	6.1	11	85	11	81	77	0	4	18	0.92
3860634--3860700	17	3.8	17	82	11	82	79	0	2	17	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3860634--3860705	23	3.0	23	82	12	83	77	0	4	18	0.92
3861003--3861047	21	2.1	22	87	4	65	0	48	0	51	1.00
3861526--3861555	12	2.5	12	88	0	51	83	0	3	13	0.77
3861528--3861563	17	2.1	17	94	0	63	80	0	5	13	0.88
3861562--3861617	28	1.9	30	85	7	80	58	1	5	33	1.31
3861621--3861746	4	31.2	4	67	16	64	67	3	3	26	1.21
3868849--3868886	17	2.3	17	86	13	53	71	7	0	21	1.11
3881371--3881936	175	3.2	175	85	5	691	25	12	14	46	1.80
3882200--3882243	18	2.6	16	82	10	52	9	2	9	79	1.02
3882200--3882248	16	2.9	17	77	20	57	10	2	8	79	1.01
3882564--3882625	28	2.3	26	81	10	79	9	9	4	75	1.17
3882828--3882926	15	6.7	15	69	26	52	39	0	2	58	1.10
3883149--3883192	24	1.9	23	86	9	63	13	4	9	72	1.24
3884092--3884132	22	1.9	22	85	5	57	36	2	2	58	1.24
3885082--3885115	12	2.8	12	90	0	59	5	11	0	82	0.83
3887487--3887597	54	2.1	54	94	0	195	26	16	14	43	1.86
3888749--3888788	3	13.3	3	100	0	80	32	0	0	67	0.91
3889002--3889054	6	8.3	6	76	12	52	30	1	3	64	1.22
3889002--3889060	21	3.0	20	78	11	59	28	1	3	66	1.18
3890454--3890617	79	2.1	78	88	2	220	28	4	10	55	1.55
3890514--3890580	34	2.0	34	82	5	82	34	5	5	53	1.50
3890717--3890750	18	1.9	18	88	5	52	29	0	8	61	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3898284--3898378	37	2.5	39	74	8	88	35	11	15	36	1.84
3898317--3898485	39	4.3	38	70	13	137	30	11	18	38	1.87
3898479--3898609	38	3.4	38	86	0	172	25	6	22	44	1.78
3899246--3899297	24	2.3	22	83	6	59	57	15	15	11	1.65
3902501--3902532	16	1.9	16	93	6	55	68	15	0	15	1.21
3907600--3907782	94	1.9	94	92	0	303	37	18	10	34	1.85
3923499--3923547	23	2.1	23	81	7	55	63	2	2	32	1.17
3925041--3925092	3	17.3	3	95	0	95	30	0	1	67	1.02
3927630--3927672	15	3.2	15	69	30	51	20	0	18	60	1.36
3927595--3927672	25	3.2	25	83	7	106	21	1	17	58	1.45
3931146--3931171	13	2.0	13	100	0	52	38	0	30	30	1.58
3934217--3934241	12	2.1	12	100	0	50	32	0	0	68	0.90
3934385--3934422	20	1.9	20	89	10	60	65	0	0	34	0.93
3934397--3934431	13	2.7	13	90	0	52	68	2	0	28	1.04
3934658--3934693	17	2.1	18	89	5	56	47	0	0	52	1.00
3934657--3934697	18	2.3	19	83	12	59	46	0	0	53	1.00
3936629--3937951	442	3.0	442	96	2	2484	24	23	13	38	1.92
3940244--3940319	37	2.0	38	92	2	127	22	3	13	60	1.49
3940307--3940346	18	2.2	18	95	0	71	27	0	12	60	1.33
3940250--3940383	18	7.7	18	63	22	54	26	2	11	60	1.42
3940260--3940290	15	2.1	15	100	0	62	19	0	12	67	1.22
3941063--3941134	35	2.1	35	100	0	144	27	11	8	52	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3941855--3941884	11	2.7	11	100	0	60	23	56	0	20	1.42
3947127--3947181	28	2.0	28	85	7	76	27	9	0	63	1.24
3952224--3952256	9	3.7	9	95	0	57	57	6	0	36	1.23
3952329--3952406	21	3.6	21	70	16	68	56	15	0	28	1.40
3954146--3954186	12	3.5	12	86	3	57	65	7	0	26	1.18
3954147--3954186	18	2.3	17	91	4	62	67	7	0	25	1.16
3954153--3954189	6	6.2	6	93	0	56	67	5	0	27	1.12
3954428--3954513	45	1.9	45	90	4	138	33	20	4	40	1.73
3954474--3954568	37	2.5	37	80	8	111	41	17	8	32	1.80
3954961--3955050	22	4.1	22	74	8	85	30	13	23	33	1.93
3954877--3955085	111	1.9	112	80	6	246	32	13	22	31	1.93
3954990--3955177	45	4.2	45	79	5	161	34	15	18	31	1.92
3954834--3955131	156	1.9	156	79	4	332	33	14	20	31	1.93
3955152--3955196	22	2.1	22	83	4	56	28	6	26	37	1.82
3955462--3955496	18	1.9	18	88	0	52	34	5	28	31	1.81
3955565--3955669	18	5.8	18	70	11	63	34	17	18	30	1.93
3955636--3955674	18	2.2	18	86	9	53	48	10	17	23	1.78
3955783--3955899	37	3.2	36	84	5	148	44	13	8	33	1.74
3955841--3955867	13	2.1	13	100	0	54	40	22	7	29	1.81
3956321--3956479	70	2.3	70	79	4	169	45	15	9	30	1.77
3957625--3957685	5	12.6	5	77	11	65	0	22	0	77	0.78
3959137--3959438	145	2.0	148	84	6	389	50	10	9	29	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3959305--3959803	140	3.7	133	78	8	494	49	11	11	27	1.73
3959922--3959993	22	3.3	22	100	0	144	41	9	22	26	1.84
3960040--3960118	40	2.0	39	87	4	115	51	7	15	25	1.69
3961663--3961733	25	2.8	24	76	19	65	47	8	0	43	1.33
3962974--3963179	43	4.9	43	88	3	287	47	15	14	22	1.82
3962974--3963179	85	2.5	84	88	2	299	47	15	14	22	1.82
3963184--3963370	42	4.4	42	88	2	266	45	13	14	25	1.83
3963121--3963243	65	1.9	64	93	3	212	48	11	14	25	1.77
3963078--3963286	107	2.0	107	94	1	366	48	12	14	24	1.79
3963184--3963370	85	2.2	85	86	4	261	45	13	14	25	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105