genome.fa.s135.2.7.7.80.10.50.1000.83.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  83  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14568599--14568719	57	2.1	56	84	6	154	49	6	8	35	1.59
14568720--14568876	61	2.6	61	85	1	217	47	6	10	35	1.64
14571690--14571732	22	1.9	23	85	4	61	48	25	4	20	1.69
14571706--14571754	15	3.2	15	80	5	53	51	22	4	22	1.65
14571742--14571789	23	2.1	23	84	0	60	45	20	8	25	1.79
14571771--14571818	17	3.0	16	85	8	62	52	22	2	22	1.58
14571797--14571842	23	2.0	24	86	4	67	52	28	0	19	1.47
14571812--14571849	16	2.4	16	86	0	58	52	28	0	18	1.45
14576920--14576968	23	2.2	23	85	7	66	10	2	18	69	1.27
14577887--14578079	103	1.9	102	80	6	228	41	13	11	33	1.81
14581772--14581804	14	2.3	15	89	5	50	12	9	0	78	0.95
14581947--14581975	2	14.5	2	100	0	58	48	0	0	51	1.00
14583527--14583646	32	3.8	31	77	4	114	49	7	4	39	1.50
14584562--14584615	26	2.0	27	86	10	76	70	0	0	29	0.88
14588642--14588672	2	15.5	2	100	0	62	51	0	0	48	1.00
14590068--14590199	9	14.1	9	67	16	54	58	3	6	31	1.40
14590067--14590122	9	5.9	9	79	8	58	51	1	7	39	1.40
14590162--14590198	19	1.9	19	88	0	56	75	5	0	18	0.99
14590286--14590361	40	1.9	40	84	7	102	47	2	1	48	1.24
14590549--14590688	19	7.2	19	71	20	60	36	3	3	56	1.34
14590616--14590694	20	4.1	19	79	8	79	35	1	6	56	1.32
14590698--14590744	21	2.2	21	92	0	76	61	0	8	29	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14590834--14590872	19	2.0	20	85	5	53	46	7	5	41	1.55
14590844--14590992	70	2.1	70	78	10	162	43	1	2	52	1.23
14590891--14591018	31	4.2	31	68	15	88	42	0	3	53	1.16
14590936--14590967	9	3.4	9	95	4	55	28	0	0	71	0.86
14590963--14591009	22	2.2	21	88	3	67	44	0	0	55	0.99
14590792--14591018	10	22.3	10	69	9	95	40	1	3	53	1.28
14592224--14592278	28	1.9	29	85	3	76	63	3	3	29	1.28
14592402--14592463	18	3.4	18	84	4	81	51	0	4	43	1.23
14592402--14592514	8	13.0	8	72	12	64	53	3	3	39	1.36
14592402--14592547	9	16.2	9	71	14	70	55	4	2	37	1.33
14592624--14592668	20	2.3	20	88	3	65	31	4	6	57	1.44
14592684--14592720	16	2.2	17	90	4	58	37	2	2	56	1.28
14595353--14595393	20	2.0	20	100	0	82	19	17	19	43	1.88
14600442--14600649	104	2.0	104	99	0	407	32	14	9	42	1.79
14603121--14603299	89	2.0	89	93	0	304	29	13	10	46	1.76
14610658--14610714	29	1.9	30	82	3	71	57	3	3	35	1.33
14613195--14613262	29	2.4	28	80	9	75	27	7	5	58	1.48
14613396--14613473	30	2.6	30	73	4	77	41	3	14	41	1.63
14614852--14614936	28	3.0	27	84	8	82	64	4	1	29	1.21
14615904--14615936	15	2.2	15	89	10	50	27	3	0	69	1.03
14616737--14616831	37	2.6	36	80	6	111	35	20	4	40	1.72
14616801--14616857	26	2.2	26	83	0	69	38	12	1	47	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14624317--14624378	28	2.1	29	82	11	74	59	9	1	29	1.38
14625266--14625325	15	3.9	15	73	14	50	20	8	0	71	1.11
14626683--14626715	13	2.5	14	90	9	52	3	0	24	72	0.98
14628621--14628654	17	1.9	18	88	5	52	29	5	5	58	1.45
14629255--14629296	19	2.2	19	100	0	84	35	11	14	38	1.83
14636721--14636750	7	4.3	7	95	0	51	73	10	0	16	1.09
14636894--14636938	21	2.1	21	84	8	56	33	26	2	37	1.69
14639344--14639378	17	2.1	17	94	0	61	71	2	5	20	1.19
14641842--14641897	20	2.7	21	75	10	53	67	14	3	14	1.35
14645181--14645255	12	5.7	12	77	17	60	5	20	0	74	1.00
14645181--14645252	28	2.7	26	83	10	99	5	19	0	75	1.00
14645180--14645264	25	3.4	25	78	4	82	5	18	1	74	1.09
14645181--14645266	12	6.8	12	72	16	59	4	19	1	74	1.06
14647014--14647122	57	1.9	58	88	1	166	43	17	8	31	1.78
14647190--14647249	29	2.2	29	82	8	72	6	15	0	78	0.95
14648478--14648502	12	2.1	12	100	0	50	16	24	24	36	1.94
14648613--14648664	22	2.4	22	83	6	70	78	0	5	15	0.92
14648624--14648661	17	2.4	16	84	16	53	84	0	5	10	0.77
14649749--14649795	3	15.7	3	90	0	67	68	25	0	6	1.13
14649747--14649801	12	4.6	12	88	0	74	67	21	0	10	1.21
14649747--14649789	15	2.9	15	96	0	77	67	23	0	9	1.19
14649749--14649795	15	3.1	15	93	0	76	68	25	0	6	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14653446--14653499	25	2.2	25	96	0	99	37	9	14	38	1.79
14653696--14653829	46	2.8	49	92	6	238	22	17	28	31	1.97
14653806--14653853	24	2.0	24	100	0	96	20	20	29	29	1.98
14653757--14653902	73	2.0	73	98	0	283	22	19	28	30	1.98
14653863--14653973	32	3.3	32	74	18	116	22	15	29	32	1.95
14653899--14653955	19	3.0	19	89	0	96	26	15	26	31	1.96
14653899--14653948	9	5.3	9	76	9	55	24	16	28	32	1.96
14653699--14654063	119	3.0	118	81	12	402	25	17	26	30	1.97
14654085--14654119	10	3.6	10	84	7	54	22	17	25	34	1.96
14654079--14654171	19	4.9	19	86	0	123	29	16	23	31	1.96
14654079--14654122	10	4.7	9	78	10	52	27	13	27	31	1.94
14654260--14654316	19	3.0	19	92	0	96	28	17	24	29	1.97
14653870--14654348	215	2.2	209	78	8	539	28	16	24	30	1.96
14654300--14654365	32	2.1	32	85	0	87	24	15	25	34	1.94
14655552--14655598	5	8.8	5	80	17	51	76	2	2	19	0.99
14655550--14655600	12	4.6	11	79	20	54	74	1	1	21	1.02
14655580--14655917	174	1.9	175	83	9	431	46	8	10	34	1.69
14664502--14664548	24	2.0	24	91	8	78	34	2	19	44	1.62
14666055--14666103	3	16.3	3	100	0	98	67	0	0	32	0.91
14667180--14667204	13	1.9	13	100	0	50	8	20	0	72	1.10
14674669--14674700	10	3.4	10	87	12	50	78	21	0	0	0.76
14675770--14675799	15	1.9	16	93	6	53	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14677554--14677681	2	64.5	2	67	7	64	40	9	4	45	1.57
14680917--14680962	23	2.0	23	87	8	67	76	0	15	8	1.02
14684728--14684962	120	2.0	116	82	6	285	52	8	17	21	1.71
14687090--14687166	23	3.3	23	82	7	84	29	20	14	35	1.92
14687967--14688056	8	10.9	8	79	15	69	82	5	2	10	0.92
14687967--14688054	9	9.7	9	76	11	56	82	5	2	9	0.90
14690761--14690801	20	2.2	20	86	8	59	58	4	7	29	1.46
14691324--14691369	2	23.5	2	91	4	76	50	0	0	50	1.00
14691368--14691553	100	1.9	100	83	2	248	37	9	11	41	1.74
14691933--14691971	2	20.0	2	94	5	71	51	0	0	48	1.00
14692382--14692442	24	2.5	24	76	5	61	59	3	1	36	1.24
14694416--14694444	8	3.6	8	100	0	58	51	0	0	48	1.00
14698100--14698147	23	2.1	23	96	0	87	37	33	14	14	1.87
14699443--14699488	7	6.6	7	100	0	92	60	0	13	26	1.32
14704234--14704265	14	2.3	14	94	0	55	40	6	9	43	1.62
14704338--14704382	2	21.0	2	82	13	54	48	4	2	44	1.35
14704340--14704390	24	2.1	24	92	0	84	47	5	3	43	1.46
14704340--14704398	24	2.5	24	88	0	73	45	6	5	42	1.52
14711014--14711082	3	23.3	3	88	8	106	34	0	1	63	1.03
14711453--14711479	5	5.4	5	100	0	54	81	0	0	18	0.69
14712477--14712512	15	2.3	16	90	4	56	50	2	0	47	1.15
14713083--14713118	2	18.5	2	94	5	65	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14718144--14718205	19	3.3	19	88	4	90	20	3	4	70	1.19
14720814--14720843	15	1.9	16	93	6	53	46	0	0	53	1.00
14720817--14720873	21	2.5	23	83	13	66	43	0	0	56	0.99
14720832--14720878	15	3.0	16	81	12	62	40	0	0	59	0.97
14720840--14720886	15	3.1	15	79	8	51	40	0	0	59	0.97
14721375--14721414	13	2.6	16	74	25	50	50	0	0	50	1.00
14722166--14722201	2	18.0	2	100	0	72	0	50	0	50	1.00
14725183--14725212	16	1.9	16	93	6	53	33	3	0	63	1.11
14728206--14728239	16	2.1	16	89	10	52	17	0	11	70	1.16
14729196--14729220	3	8.3	3	100	0	50	68	0	0	32	0.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105