genome.fa.s135.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  71  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12643163--12643273	50	2.3	48	88	3	168	53	9	7	29	1.61
12644282--12644328	6	7.8	6	77	17	53	12	2	2	82	0.84
12644288--12644329	13	3.3	13	86	3	59	11	2	2	83	0.84
12644280--12644345	22	3.0	22	85	12	82	12	3	3	81	0.91
12644421--12644484	24	2.6	25	87	5	94	25	1	9	64	1.33
12644530--12644597	14	5.2	13	72	22	54	25	10	14	50	1.74
12645648--12645701	25	2.2	23	78	15	63	22	3	14	59	1.51
12645656--12645707	25	2.1	25	88	0	77	21	5	15	57	1.58
12648780--12648812	12	2.8	12	82	17	50	75	3	15	6	1.11
12649703--12649740	19	2.1	19	85	5	51	44	5	18	31	1.72
12650150--12650419	110	2.5	108	83	7	321	35	14	14	35	1.86
12650467--12650515	22	2.2	22	89	7	73	38	26	10	24	1.87
12650467--12650538	22	3.3	22	78	7	67	38	25	11	25	1.88
12650634--12650696	23	2.7	24	79	16	78	34	20	7	36	1.82
12650635--12650711	21	3.4	21	77	15	66	33	22	6	37	1.80
12650635--12650723	44	2.0	46	88	6	137	34	22	5	37	1.78
12650651--12650740	23	4.0	23	79	5	103	36	21	5	36	1.77
12651603--12651663	20	3.1	19	75	20	54	16	3	4	75	1.11
12651748--12651793	23	2.0	23	88	12	69	26	4	10	58	1.50
12651840--12651930	38	2.4	38	79	16	102	26	6	10	56	1.58
12655788--12655816	10	2.9	10	100	0	58	48	10	0	41	1.37
12657015--12657096	38	2.0	42	81	11	100	59	10	4	24	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12659834--12659900	34	1.9	35	84	3	91	55	0	0	44	0.99
12659920--12659995	12	6.4	12	67	24	54	42	1	1	55	1.16
12659919--12660006	19	4.7	17	75	20	79	40	1	1	56	1.14
12659935--12660008	17	4.6	15	75	13	51	41	1	1	55	1.17
12660120--12660165	22	2.1	21	84	11	58	26	4	6	63	1.38
12667430--12667468	16	2.5	16	83	4	53	38	0	5	56	1.22
12667447--12667493	23	2.0	24	84	8	62	31	0	4	63	1.13
12667462--12667511	26	2.0	25	84	4	64	30	2	4	64	1.23
12667571--12667595	13	1.9	13	100	0	50	36	0	0	64	0.94
12667571--12667635	18	3.7	17	78	12	69	33	0	0	66	0.92
12672244--12672444	104	1.9	104	91	0	330	47	7	7	36	1.62
12675616--12675680	3	21.7	3	90	0	85	69	4	0	26	1.08
12675616--12675680	18	3.6	18	89	0	103	69	4	0	26	1.08
12675679--12675722	3	14.7	3	90	0	70	31	4	31	31	1.78
12676027--12676243	64	3.4	64	83	1	240	43	11	21	23	1.85
12676027--12676194	34	5.2	33	66	16	109	44	11	20	23	1.84
12681504--12681543	12	3.3	12	85	0	53	67	2	2	27	1.16
12681848--12681877	11	2.7	11	100	0	60	36	43	10	10	1.72
12683433--12683459	3	9.0	3	100	0	54	66	0	0	33	0.92
12684542--12684597	18	3.2	19	78	19	75	51	10	0	37	1.37
12684380--12684806	127	3.4	127	81	4	445	42	9	4	43	1.58
12685162--12685199	3	12.7	3	100	0	76	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12686577--12686624	20	2.3	21	85	7	62	47	2	12	37	1.53
12688500--12688546	25	1.9	24	82	4	58	27	8	14	48	1.73
12688535--12688623	13	7.3	12	75	8	56	25	1	6	66	1.23
12688540--12688623	11	7.1	11	79	15	87	26	1	7	65	1.25
12688535--12688623	24	3.7	23	80	10	99	25	1	6	66	1.23
12688517--12688619	48	2.1	48	80	7	111	28	1	9	60	1.39
12693861--12693885	2	12.5	2	100	0	50	48	0	0	52	1.00
12694611--12694664	27	2.0	27	85	3	72	46	0	3	50	1.19
12694979--12695010	15	2.1	16	88	11	50	28	0	0	71	0.86
12702591--12702621	16	2.0	16	93	6	55	70	6	22	0	1.09
12702686--12703103	59	7.0	59	79	12	374	38	8	4	48	1.52
12704116--12704375	41	6.3	42	78	5	269	43	18	13	25	1.86
12704084--12704375	83	3.5	82	76	5	239	42	18	13	26	1.87
12704116--12704375	125	2.1	124	85	5	346	43	18	13	25	1.86
12721169--12721206	16	2.4	16	86	8	51	65	7	0	26	1.19
12726163--12726442	46	6.0	45	82	8	278	41	16	13	29	1.86
12726172--12726441	93	2.9	92	83	8	325	42	15	12	28	1.85
12726186--12726477	139	2.1	139	84	5	376	42	17	11	28	1.84
12726186--12726568	46	8.3	46	76	9	269	42	16	12	28	1.84
12737979--12738033	10	5.9	10	71	16	55	50	0	0	49	1.00
12737981--12738032	18	2.8	19	77	11	63	51	0	0	48	1.00
12738735--12738798	28	2.2	29	84	10	87	15	1	12	70	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12745859--12745884	2	13.0	2	100	0	52	50	0	0	50	1.00
12746380--12746571	98	2.0	98	95	0	348	29	20	10	39	1.86
12747562--12747614	12	4.2	12	77	15	54	43	0	0	56	0.99
12747646--12747714	23	2.9	24	82	4	86	47	4	1	46	1.31
12747703--12747781	19	4.2	19	67	20	67	39	1	1	58	1.14
12747699--12747780	17	4.5	17	68	21	51	41	1	1	56	1.15
12749302--12749347	21	2.2	21	92	0	74	41	19	8	30	1.82
12752598--12752751	76	2.0	76	89	2	238	49	12	11	27	1.74
12753317--12753467	79	1.9	79	89	4	234	30	19	7	43	1.78
12754667--12754706	16	2.5	16	91	0	62	55	2	0	42	1.13
12755081--12755105	2	12.5	2	100	0	50	48	0	0	52	1.00
12755693--12755747	28	2.0	27	89	6	85	43	0	0	56	0.99
12755771--12755800	15	2.0	15	93	0	51	56	3	0	40	1.16
12756023--12756066	2	22.0	2	100	0	88	50	0	0	50	1.00
12763703--12763757	26	2.1	26	89	0	83	52	5	10	30	1.59
12764225--12764269	23	2.0	23	87	12	67	22	2	2	73	1.05
12766726--12766768	22	2.0	21	90	4	68	81	2	11	4	0.93
12767860--12768027	71	2.4	71	80	2	203	26	11	17	44	1.84
12768615--12768846	32	7.3	32	70	8	125	20	24	9	45	1.81
12768955--12769017	33	1.9	33	87	3	92	28	17	4	49	1.67
12768996--12769101	33	3.2	33	70	11	83	28	19	12	39	1.88
12769060--12769139	38	2.1	38	81	4	90	26	17	11	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12769581--12769623	21	2.0	21	86	8	61	25	11	0	62	1.29
12770191--12770250	26	2.2	28	82	5	70	10	0	15	75	1.05
12775859--12775887	15	1.9	15	100	0	58	27	10	0	62	1.28
12780923--12780991	32	2.2	32	91	0	111	37	21	10	30	1.87
12781130--12781159	15	2.0	15	93	0	51	20	30	13	36	1.90
12781107--12781197	41	2.2	41	86	0	119	32	23	10	32	1.89
12781383--12781421	18	2.2	18	95	0	69	20	17	20	41	1.91
12781761--12782071	49	6.3	50	81	7	330	29	14	18	37	1.90
12781787--12782071	99	2.9	96	82	6	304	30	14	19	36	1.91
12782047--12782092	20	2.2	21	88	3	67	39	10	8	41	1.71
12782008--12782141	70	1.9	70	84	3	180	34	13	14	38	1.85
12781899--12782241	169	2.0	169	84	4	442	32	13	16	37	1.88
12782078--12782355	49	5.6	48	79	7	236	33	13	15	37	1.87
12782102--12782359	99	2.6	100	77	10	262	33	12	16	36	1.87
12782067--12782380	49	6.4	48	77	11	212	34	13	14	37	1.85
12785070--12785107	18	2.1	18	90	0	58	15	13	23	47	1.81
12788876--12788930	27	2.0	27	86	13	76	34	3	3	58	1.33
12791371--12791452	25	3.2	25	67	16	67	29	12	7	51	1.66
12791350--12791491	53	2.7	52	83	5	178	26	16	8	47	1.75
12792842--12793103	42	6.3	41	85	3	265	42	19	12	24	1.86
12792835--12793103	84	3.2	83	82	3	297	42	19	13	25	1.87
12794010--12794043	13	2.6	13	85	0	50	5	8	0	85	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12800550--12800747	99	2.0	99	90	2	308	30	14	15	39	1.87
12802585--12802642	29	2.0	29	96	0	107	32	13	22	31	1.93
12802585--12802633	15	3.3	15	71	5	55	34	12	24	28	1.91
12803520--12803627	50	2.3	45	75	14	108	49	4	18	27	1.67
12803527--12803622	50	1.9	50	84	0	129	50	5	18	26	1.68
12805034--12805063	16	1.9	16	93	6	53	16	0	0	83	0.65
12805293--12805340	9	4.9	9	78	16	51	81	4	0	14	0.84
12805294--12805334	21	2.0	21	90	0	64	82	2	0	14	0.76
12806182--12806221	15	2.7	15	84	0	53	80	0	20	0	0.72
12806198--12806238	21	2.1	20	86	13	59	78	0	21	0	0.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105