genome.fa.s135.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  55  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10426374--10426419	11	4.5	11	81	13	53	15	6	0	78	0.95
10426446--10426829	58	6.6	57	87	5	488	41	7	13	37	1.72
10426446--10426829	174	2.2	175	87	4	546	41	7	13	37	1.72
10427405--10427446	22	1.9	22	85	9	59	23	7	4	64	1.38
10428894--10428923	15	2.0	15	93	0	51	43	33	13	10	1.77
10438780--10439079	41	7.1	40	77	11	244	25	14	19	40	1.90
10438785--10438973	44	4.4	43	75	11	147	24	13	17	43	1.85
10439016--10439153	75	1.9	71	85	5	186	23	15	23	36	1.94
10439401--10439550	4	37.8	4	71	15	66	28	2	2	66	1.16
10439410--10439657	3	76.7	3	71	20	114	29	3	1	65	1.17
10439337--10439600	53	5.1	50	72	18	123	27	3	3	66	1.21
10439362--10439487	9	14.1	9	73	20	56	26	1	1	70	1.05
10439403--10439601	47	4.3	46	77	16	146	30	3	2	64	1.19
10439523--10439622	47	2.2	47	84	8	127	33	6	0	61	1.21
10439616--10439659	8	5.2	8	83	8	52	20	2	0	77	0.88
10439626--10439666	12	3.3	12	86	3	55	17	2	0	80	0.82
10440021--10440072	19	2.7	19	90	0	86	23	9	26	40	1.85
10440556--10440625	3	24.7	3	75	18	62	27	1	1	70	1.05
10440544--10440628	6	13.8	6	74	16	50	23	1	1	74	0.96
10440658--10441043	58	6.6	58	82	6	415	41	8	14	36	1.75
10440656--10441041	117	3.3	114	82	6	436	41	7	14	36	1.74
10456974--10457062	45	2.0	45	95	4	162	38	1	6	53	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10464257--10464289	16	1.9	18	88	11	52	27	12	12	48	1.76
10468782--10469726	482	2.0	473	86	5	1323	44	7	9	38	1.67
10473516--10473572	29	2.0	29	92	0	96	31	15	5	47	1.68
10475572--10475971	219	1.8	218	83	4	538	31	11	6	50	1.63
10484525--10484603	37	2.1	38	88	2	115	35	18	5	40	1.73
10488113--10488185	11	6.5	11	71	13	60	73	1	17	6	1.11
10488114--10488185	28	2.6	27	81	16	85	73	1	18	6	1.12
10488135--10488182	16	2.9	17	84	9	64	75	2	12	10	1.14
10488146--10488188	16	2.7	15	86	10	59	74	2	13	9	1.16
10489057--10489105	24	2.1	23	85	7	64	42	6	6	44	1.54
10489215--10489395	62	3.0	61	80	12	153	32	9	5	52	1.58
10489424--10489465	16	2.5	16	84	7	57	71	4	7	16	1.26
10490094--10490131	20	1.9	20	89	10	60	2	13	10	73	1.19
10493276--10493370	17	5.6	17	71	0	64	43	10	16	29	1.82
10493265--10493396	34	3.9	34	76	4	115	40	9	16	33	1.82
10493506--10493624	46	2.6	46	79	2	123	41	14	9	35	1.78
10494715--10494747	17	1.9	17	100	0	66	0	15	0	84	0.61
10496546--10496627	40	2.0	40	83	4	103	39	19	7	34	1.80
10497439--10497582	64	2.3	64	90	1	218	25	10	18	45	1.81
10498325--10498463	43	3.3	42	76	9	122	24	18	20	36	1.95
10498478--10498559	43	1.9	43	84	0	110	28	13	17	41	1.87
10498412--10498653	118	2.1	117	91	2	389	27	18	16	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10498527--10498672	75	1.9	76	87	4	215	28	19	16	35	1.94
10498908--10499287	46	8.3	45	77	8	286	32	12	11	43	1.78
10498979--10499240	137	1.9	135	88	1	398	31	10	12	44	1.77
10500810--10500971	64	2.6	64	87	2	211	37	11	19	31	1.87
10505096--10505399	62	4.9	60	72	9	229	33	14	10	40	1.81
10505754--10505930	61	2.8	61	80	11	182	36	12	13	37	1.83
10511021--10511057	13	2.8	13	87	0	56	24	8	5	62	1.44
10512204--10512937	161	4.6	161	81	2	771	33	11	13	42	1.80
10513941--10514000	33	1.9	33	86	10	90	40	18	8	33	1.80
10520902--10521161	124	2.1	125	81	5	294	35	15	16	33	1.90
10524163--10524238	34	2.3	33	86	2	98	59	3	3	32	1.34
10524196--10524248	14	3.4	14	72	22	52	56	0	5	37	1.23
10524199--10524235	19	1.9	19	88	0	56	59	0	2	37	1.12
10524163--10524248	33	2.6	34	86	1	111	56	3	4	34	1.37
10524218--10524248	14	2.2	14	94	0	53	54	0	6	38	1.26
10524230--10524303	35	2.1	34	80	7	78	43	8	5	43	1.57
10525463--10525493	2	15.5	2	100	0	62	48	0	0	51	1.00
10535172--10535202	16	2.0	16	93	6	55	35	6	0	58	1.24
10540029--10540058	9	3.4	9	95	4	53	46	6	0	46	1.29
10546165--10546203	21	1.9	20	94	5	69	43	5	0	51	1.24
10548590--10548624	17	2.0	18	88	5	54	48	2	2	45	1.32
10549642--10549694	18	2.9	18	72	10	54	33	1	13	50	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10550023--10550052	3	10.0	3	100	0	60	66	0	0	33	0.92
10550243--10550375	42	3.3	41	80	6	137	44	16	11	27	1.82
10550513--10550667	40	3.8	40	79	6	172	43	14	14	27	1.84
10551277--10551316	16	2.5	15	84	11	53	2	7	2	87	0.71
10551277--10551318	17	2.5	17	88	3	59	2	9	2	85	0.77
10552080--10552119	17	2.4	17	95	4	73	25	7	5	62	1.42
10558833--10558867	3	12.0	3	87	6	54	31	0	2	65	1.07
10559027--10559071	9	5.2	8	82	12	54	15	4	0	80	0.87
10559320--10559359	18	2.2	18	86	8	55	75	2	5	17	1.10
10559320--10559367	19	2.5	19	80	6	53	77	2	6	14	1.06
10560856--10560891	19	1.9	19	88	5	56	72	2	2	22	1.11
10561357--10561395	18	2.2	18	85	0	51	28	7	15	48	1.72
10561792--10561831	3	13.7	3	89	5	64	32	0	2	65	1.06
10567522--10567563	11	3.7	12	82	17	54	7	30	9	52	1.61
10567654--10567784	65	2.0	65	100	0	262	35	16	13	34	1.89
10570599--10570651	21	2.5	21	90	6	81	66	9	0	24	1.21
10570599--10570672	23	3.4	22	81	9	80	63	8	1	27	1.30
10570648--10570774	10	12.5	10	71	12	62	58	7	2	32	1.38
10570649--10570777	9	12.9	9	69	18	51	56	6	2	34	1.39
10570654--10570693	21	1.9	21	85	10	55	55	2	2	40	1.27
10570710--10570776	21	3.4	18	72	24	55	55	8	1	34	1.40
10571695--10571815	9	13.0	9	75	9	91	39	2	4	53	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10571705--10571788	19	4.4	19	80	8	91	35	1	4	58	1.27
10571802--10571846	12	3.8	12	82	11	65	46	4	4	44	1.43
10571895--10571974	10	8.2	10	72	10	58	32	2	7	57	1.40
10571895--10571974	19	4.2	19	74	6	72	32	2	7	57	1.40
10572431--10572568	43	3.2	42	76	9	111	42	13	15	28	1.85
10572631--10572757	34	3.8	34	83	5	134	41	13	20	24	1.88
10572965--10573032	34	2.0	34	97	0	127	42	20	7	29	1.79
10573913--10573949	18	2.0	19	94	5	67	10	10	2	75	1.14
10575961--10576022	15	4.1	15	76	15	56	79	1	17	1	0.90
10575959--10575993	17	2.1	17	88	0	52	82	0	17	0	0.66
10575951--10576022	23	3.0	24	74	11	58	76	1	20	1	0.94
10575961--10576022	8	8.3	7	76	16	54	79	1	17	1	0.90
10576104--10576153	25	1.9	26	92	8	84	66	0	12	22	1.24
10577209--10577329	8	14.9	8	72	12	68	52	28	0	18	1.45
10577209--10577324	16	7.2	16	73	8	92	55	28	0	16	1.42
10577209--10577329	24	5.0	24	74	9	102	52	28	0	18	1.45
10577242--10577324	41	2.1	38	80	6	85	56	28	0	14	1.39
10577483--10577519	18	2.2	18	85	9	51	24	0	2	72	0.97
10588630--10588668	19	2.0	20	90	5	62	79	5	10	5	1.04
10590150--10590225	35	2.2	35	80	4	82	19	17	13	50	1.78
10590510--10590557	14	3.5	14	81	13	55	75	0	0	25	0.81
10590531--10590578	19	2.5	19	75	3	51	77	4	2	16	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10592073--10592136	29	2.2	30	83	13	80	62	0	17	20	1.33
10592064--10592136	29	2.5	29	80	10	78	64	0	15	20	1.29
10592234--10592289	26	2.1	26	80	9	60	64	7	8	19	1.45
10592939--10592982	5	8.6	5	82	2	52	63	0	4	31	1.14
10593310--10593429	16	7.4	16	67	14	66	50	28	5	15	1.65
10593318--10593404	8	10.9	8	74	4	68	50	31	4	13	1.62
10598276--10598338	35	1.9	33	84	12	85	53	19	9	17	1.70
10606149--10606235	3	29.3	3	78	15	92	63	1	4	31	1.22
10606536--10606860	172	1.9	173	81	1	393	33	14	28	23	1.94
10615586--10615675	45	2.0	45	91	0	144	63	3	12	21	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105