genome.fa.s135.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  98  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17665507--17665625	22	5.5	22	71	4	89	50	7	9	32	1.62
17665503--17665626	43	2.8	45	76	8	123	50	7	9	33	1.63
17665579--17665677	52	1.9	50	84	8	128	46	11	8	34	1.69
17665642--17665909	22	12.4	21	71	12	87	48	5	9	36	1.60
17665630--17665711	43	1.9	43	82	5	103	46	8	8	36	1.65
17665803--17666117	44	7.0	44	73	10	219	43	6	10	39	1.65
17665936--17666117	22	8.3	22	78	4	152	45	7	9	38	1.64
17666446--17666487	22	1.9	22	85	0	57	50	4	7	38	1.51
17666453--17666527	22	3.4	22	75	3	71	46	2	9	41	1.50
17666632--17666682	22	2.3	22	93	6	86	45	9	7	37	1.67
17666648--17666862	22	9.9	21	69	12	103	47	5	10	36	1.61
17666779--17666864	11	7.7	11	69	16	52	51	5	9	33	1.58
17666836--17666892	30	1.9	30	85	0	78	47	5	8	38	1.57
17666967--17667143	44	4.0	44	74	7	119	45	5	8	40	1.58
17666908--17667057	22	6.9	22	71	7	92	46	7	7	38	1.60
17667422--17667559	42	3.3	42	78	7	147	50	10	5	34	1.58
17667531--17667580	20	2.5	20	83	6	57	56	14	6	24	1.60
17667422--17667559	21	6.7	20	75	10	98	50	10	5	34	1.58
17667489--17667580	21	4.5	20	79	6	78	50	13	6	30	1.66
17673836--17673869	11	3.3	11	92	8	54	88	0	5	5	0.64
17673836--17673905	9	7.4	9	81	9	59	80	1	2	15	0.91
17674079--17674399	49	6.8	48	76	9	237	38	20	11	29	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17674079--17674399	96	3.4	96	81	6	350	38	20	11	29	1.88
17687637--17687682	11	4.4	11	78	10	60	86	0	13	0	0.56
17687631--17687682	20	2.7	19	82	11	70	84	0	15	0	0.62
17687634--17687682	18	2.9	18	85	8	68	85	0	14	0	0.59
17687995--17688351	123	2.9	120	81	6	378	37	7	8	47	1.60
17687995--17688346	61	5.7	61	79	7	372	37	7	8	47	1.61
17694930--17695179	125	2.0	125	94	0	437	30	17	20	32	1.95
17698243--17698286	21	2.0	22	83	12	56	81	2	13	2	0.88
17701836--17701865	2	15.0	2	92	0	51	46	0	3	50	1.18
17710991--17711033	2	21.5	2	90	0	68	44	0	53	2	1.13
17714331--17714872	273	2.0	273	95	0	985	30	21	18	29	1.97
17715552--17715617	33	2.0	33	90	0	105	33	13	16	36	1.88
17716054--17716250	100	2.0	102	86	4	283	39	13	20	26	1.89
17718602--17718705	50	2.1	50	96	0	190	44	8	8	38	1.66
17722596--17722633	17	2.2	17	86	9	51	21	13	0	65	1.26
17723494--17723650	52	3.0	52	85	1	199	28	21	6	43	1.77
17723675--17723713	11	3.5	11	85	0	60	53	23	0	23	1.46
17723979--17724057	25	3.2	24	73	8	70	21	30	6	41	1.78
17723969--17724080	49	2.3	50	79	4	120	21	29	8	41	1.82
17723991--17724080	25	3.6	25	76	7	85	21	28	8	41	1.83
17724481--17724618	68	2.0	69	87	6	201	33	32	9	24	1.87
17724713--17724869	52	3.0	52	83	1	199	28	21	7	43	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17724894--17724935	11	3.8	11	87	0	66	50	26	0	23	1.50
17727891--17727966	39	2.0	38	82	7	91	44	3	2	48	1.35
17734260--17734307	19	2.5	20	80	6	64	31	0	4	64	1.12
17749263--17749324	30	2.1	30	96	0	115	19	16	32	32	1.94
17749805--17749833	2	14.5	2	100	0	58	51	0	0	48	1.00
17752006--17752077	31	2.6	26	76	19	81	47	5	8	38	1.57
17752569--17752597	2	14.5	2	100	0	58	51	0	0	48	1.00
17752597--17752635	2	19.5	2	100	0	78	51	0	48	0	1.00
17761116--17761207	38	2.4	39	89	5	134	17	1	59	21	1.43
17761731--17761779	25	1.9	26	91	4	82	46	2	10	40	1.49
17763117--17763146	16	1.9	15	100	0	51	43	16	0	40	1.48
17765682--17765733	5	9.8	5	85	10	68	73	0	1	25	0.94
17765781--17765827	13	3.6	13	75	11	51	46	0	0	53	1.00
17765763--17765845	35	2.2	37	83	8	98	50	0	0	49	1.00
17767097--17767150	27	2.2	26	84	15	71	42	0	0	57	0.98
17767145--17767191	25	1.9	24	83	12	60	34	6	2	57	1.36
17768420--17768452	15	2.1	16	88	11	50	63	6	0	30	1.18
17773824--17773943	8	14.9	8	78	13	95	76	0	12	10	1.02
17773824--17773926	23	4.7	22	72	15	63	77	0	11	10	0.99
17773843--17773926	16	5.2	16	83	9	109	82	0	7	10	0.85
17773843--17773953	24	4.5	24	78	14	109	79	0	9	10	0.94
17773833--17773956	24	5.5	22	70	17	76	77	0	12	9	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17775155--17775398	46	5.4	46	80	6	284	38	8	13	39	1.75
17775155--17775469	21	13.8	24	70	17	201	39	9	12	38	1.75
17775920--17776070	42	3.6	42	87	1	216	24	11	19	43	1.85
17775920--17776087	42	4.0	41	82	6	194	24	11	20	43	1.85
17776249--17776278	8	3.9	8	91	8	53	90	0	0	10	0.47
17776244--17776280	18	2.1	18	90	10	58	89	0	0	10	0.49
17776250--17776278	15	1.9	15	100	0	58	89	0	0	10	0.48
17776663--17776696	10	3.6	10	84	15	54	8	0	14	76	1.01
17776663--17776696	9	3.7	9	88	4	50	8	0	14	76	1.01
17776731--17776756	8	3.2	8	100	0	52	84	0	0	15	0.62
17776799--17777257	170	2.6	170	78	16	415	44	7	10	37	1.67
17777397--17777429	4	8.0	4	96	3	57	48	0	3	48	1.17
17778627--17778677	22	2.5	20	75	15	50	49	1	1	47	1.24
17778989--17779018	2	15.0	2	92	0	51	46	0	53	0	1.00
17783626--17783693	35	1.9	35	90	0	109	22	11	17	48	1.79
17793347--17793387	16	2.8	15	89	10	59	24	0	0	75	0.80
17793756--17793796	20	2.0	20	85	0	55	31	17	9	41	1.82
17794391--17794442	24	2.1	26	85	7	72	50	5	5	38	1.51
17794386--17794446	25	2.3	26	81	13	72	49	4	4	40	1.46
17799237--17799277	21	2.0	21	85	4	57	19	0	2	78	0.87
17799298--17799345	4	11.8	4	78	12	53	72	2	2	22	1.05
17799298--17799349	12	4.5	11	82	17	61	73	1	1	23	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17800136--17800181	20	2.2	20	88	3	65	19	2	2	76	1.00
17808655--17808698	17	2.7	16	82	6	52	72	6	2	18	1.17
17808911--17808943	13	2.5	14	90	9	52	12	9	0	78	0.95
17812022--17812386	182	2.0	182	98	0	703	36	14	17	31	1.89
17828171--17828207	2	18.5	2	100	0	74	51	0	48	0	1.00
17832971--17833020	17	2.9	17	72	21	50	70	6	0	24	1.10
17846559--17846594	18	1.9	19	88	5	56	58	8	0	33	1.28
17853146--17853175	2	15.0	2	92	0	51	46	3	0	50	1.18
17853526--17853555	12	2.6	11	90	10	51	36	0	0	63	0.95
17858804--17858862	23	2.6	22	76	12	57	16	3	30	49	1.63
17858902--17859054	29	5.3	28	75	10	121	18	4	30	46	1.69
17859047--17859241	59	3.3	57	78	6	194	23	4	30	42	1.73
17859069--17859246	88	2.0	88	89	2	268	23	3	30	42	1.72
17859047--17859257	29	7.3	29	79	7	173	23	3	30	42	1.72
17859741--17859787	7	6.7	7	100	0	94	74	0	12	12	1.07
17859741--17859796	21	2.6	21	94	5	94	73	0	12	14	1.11
17860792--17860847	3	18.7	3	100	0	112	33	0	0	66	0.92
17863268--17863308	22	1.9	21	85	5	55	68	0	2	29	1.03
17871812--17872269	236	1.9	236	90	0	736	31	10	14	42	1.80
17878580--17878631	25	2.1	25	85	0	68	26	17	23	32	1.96
17881328--17881380	23	2.3	22	75	9	52	54	3	11	30	1.53
17882762--17882794	10	3.5	10	84	16	52	48	9	0	42	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17892316--17892357	22	1.9	22	85	0	57	45	4	4	45	1.45
17892930--17892973	23	1.9	23	81	9	54	45	0	4	50	1.22
17894132--17894192	22	2.8	23	76	14	58	47	1	0	50	1.10
17894303--17894387	37	2.3	34	82	13	89	57	0	2	40	1.11
17894327--17894393	35	1.9	34	82	11	82	61	0	2	35	1.12
17895482--17895511	3	10.3	3	92	7	53	30	0	0	70	0.88
17896045--17896212	33	4.8	33	76	18	180	17	22	16	43	1.88
17896089--17896179	19	4.3	19	68	26	67	18	25	13	42	1.86
17896045--17896179	66	2.0	66	98	0	261	18	23	15	42	1.89
17898388--17898633	81	3.0	81	63	19	186	40	2	7	49	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105