genome.fa.s135.2.7.7.80.10.50.1000.91.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  91  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16172039--16172076	15	2.4	16	82	4	51	52	5	36	5	1.47
16176951--16177000	8	6.0	8	82	17	66	74	0	12	14	1.09
16176960--16177018	27	2.2	27	88	11	86	74	0	13	11	1.07
16176960--16177001	9	4.7	9	82	11	59	76	0	11	11	1.03
16178033--16178292	43	6.1	42	84	4	299	24	15	22	37	1.93
16178033--16178292	42	6.1	42	83	5	267	24	15	22	37	1.93
16178033--16178223	85	2.3	84	89	0	292	25	14	20	38	1.91
16178048--16178290	126	1.9	126	82	5	303	24	16	22	37	1.93
16178300--16178339	18	2.3	18	95	4	73	87	5	0	7	0.66
16184318--16184448	52	2.5	52	83	0	145	24	20	9	45	1.82
16184474--16184505	11	2.9	11	90	0	55	46	28	0	25	1.53
16185505--16185551	12	3.6	14	83	16	57	38	0	0	61	0.96
16190077--16190116	20	1.9	22	85	10	57	62	0	25	12	1.30
16190255--16190313	2	29.5	2	92	0	100	0	45	0	54	0.99
16194134--16194160	12	2.2	12	100	0	54	48	11	0	40	1.39
16194527--16194570	23	1.9	23	81	9	54	54	0	0	45	0.99
16197064--16197117	9	5.5	10	85	14	53	29	0	7	62	1.22
16197069--16197199	16	8.1	16	69	25	73	30	0	3	64	1.16
16197121--16197188	4	17.5	4	73	11	52	29	0	2	67	1.05
16197780--16197830	20	2.5	20	76	17	61	31	21	13	33	1.92
16198159--16198214	20	2.8	19	79	10	58	14	1	1	82	0.84
16198178--16198218	21	2.0	21	90	9	66	9	2	2	85	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16198156--16198221	12	5.2	12	76	10	60	15	1	1	81	0.83
16198230--16198269	17	2.4	16	84	8	53	22	5	0	72	1.04
16198274--16198320	17	2.8	16	90	6	67	14	4	0	80	0.85
16198323--16198841	57	8.9	57	87	5	679	44	7	11	35	1.71
16198477--16198568	30	3.2	30	65	20	86	43	7	10	38	1.68
16198465--16198553	27	3.2	27	63	25	67	43	5	12	38	1.66
16198492--16198583	30	3.2	30	63	25	79	44	7	7	40	1.61
16198336--16198841	171	2.9	170	90	4	755	44	7	12	35	1.71
16204314--16204358	15	2.9	15	80	6	54	60	4	28	6	1.42
16204325--16204357	18	1.9	18	88	11	52	60	3	30	6	1.36
16209212--16209295	17	4.9	18	78	17	90	73	0	9	16	1.08
16209244--16209313	20	3.4	20	78	5	77	71	0	15	12	1.15
16209213--16209295	8	9.7	9	82	13	79	74	0	9	15	1.06
16210318--16210649	41	8.0	41	89	2	475	24	17	21	37	1.94
16210318--16210649	83	4.0	83	90	1	495	24	17	21	37	1.94
16210317--16210633	124	2.5	123	90	3	472	24	17	21	36	1.94
16210846--16211017	3	55.3	3	71	23	58	27	1	4	66	1.19
16210878--16211017	16	8.8	16	70	25	77	29	0	4	65	1.16
16210875--16210999	45	2.9	43	73	13	107	28	0	4	65	1.18
16210875--16211019	44	3.4	45	71	18	130	28	0	4	66	1.15
16211672--16211710	20	2.0	19	90	5	60	58	0	38	2	1.12
16211945--16212015	26	2.8	24	78	16	63	9	2	4	83	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16211946--16212118	22	8.1	20	68	15	80	15	3	4	76	1.09
16211957--16212022	26	2.6	25	78	7	71	13	1	4	80	0.94
16212031--16212070	17	2.4	16	84	8	53	22	5	0	72	1.04
16212057--16212125	6	11.5	6	75	16	54	14	4	1	79	0.95
16212057--16212111	17	3.2	17	84	5	76	12	3	1	81	0.89
16212057--16212125	26	2.6	25	70	20	52	14	4	1	79	0.95
16212146--16212771	57	10.8	57	85	7	825	45	7	12	34	1.70
16212135--16212771	173	3.6	174	91	3	982	45	7	11	34	1.70
16212435--16212525	30	3.2	27	67	19	76	46	5	13	35	1.66
16214292--16214320	13	2.1	14	93	6	51	24	0	13	62	1.32
16215574--16215643	35	2.0	35	100	0	140	34	25	8	31	1.86
16221736--16221765	15	1.9	16	93	6	53	50	0	0	50	1.00
16227581--16227611	16	2.0	16	93	6	55	58	0	0	41	0.98
16230321--16230353	8	4.2	8	96	3	59	12	0	0	87	0.53
16232792--16233090	21	14.3	21	70	7	164	46	10	7	35	1.66
16233125--16233179	11	5.1	11	76	10	51	52	7	3	36	1.47
16233132--16233179	21	2.2	22	85	3	62	54	8	4	33	1.50
16233178--16233228	26	2.0	26	88	0	75	49	7	5	37	1.56
16233875--16233938	23	2.8	23	83	9	78	62	3	0	34	1.11
16233869--16233936	22	3.1	21	79	14	66	61	2	0	35	1.11
16236437--16236474	19	2.1	19	85	14	53	34	0	2	63	1.09
16236964--16237087	29	4.3	29	71	11	101	23	0	29	46	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16237031--16237079	14	3.4	14	83	5	62	18	0	34	46	1.49
16237031--16237198	16	10.9	15	68	16	69	21	2	30	45	1.65
16236965--16237136	58	2.9	56	77	13	141	23	1	28	46	1.62
16237098--16237171	31	2.3	32	84	9	89	20	4	32	43	1.70
16237130--16237205	31	2.5	31	86	4	100	21	2	30	46	1.65
16238261--16238292	17	1.9	17	93	6	57	0	6	15	78	0.95
16238640--16238665	13	2.0	13	100	0	52	15	0	0	84	0.62
16238655--16238690	18	2.1	18	94	5	65	41	0	0	58	0.98
16238868--16239493	110	5.7	109	79	5	591	39	16	20	23	1.92
16239023--16239065	22	2.0	22	90	0	68	30	13	23	32	1.93
16238926--16239510	220	2.7	217	83	5	714	39	16	20	23	1.92
16239508--16239548	21	2.0	21	85	9	57	29	12	24	34	1.91
16239354--16239663	153	2.0	153	85	3	417	38	15	20	26	1.92
16239508--16240402	109	8.2	110	81	3	901	39	16	20	24	1.92
16239278--16239755	262	1.8	263	85	2	683	39	16	19	24	1.92
16239508--16240389	219	4.0	218	82	4	918	39	16	20	24	1.91
16240052--16240095	22	2.0	22	90	0	70	34	20	20	25	1.97
16239518--16240334	328	2.5	327	83	3	1021	39	16	19	23	1.92
16240293--16240562	87	3.1	87	88	2	389	40	17	19	22	1.91
16240394--16240847	196	2.3	196	84	4	578	41	18	19	20	1.90
16240469--16240671	109	1.9	109	84	2	273	41	17	18	22	1.90
16240575--16240762	87	2.2	86	78	5	200	40	19	19	20	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16240184--16240748	283	2.0	285	83	2	726	41	17	18	22	1.91
16240678--16241108	110	3.9	110	76	5	345	41	17	19	22	1.91
16240971--16241014	22	2.0	22	86	0	61	29	22	25	22	1.99
16240678--16241108	220	2.0	219	80	5	494	41	17	19	22	1.91
16241255--16241352	41	2.4	40	87	3	133	37	11	13	37	1.80
16241634--16241670	16	2.2	17	95	4	67	8	2	5	83	0.88
16242035--16242074	18	2.3	17	83	8	53	40	0	0	60	0.97
16242315--16242512	88	2.2	88	85	0	270	38	16	21	22	1.92
16242404--16242739	110	3.0	110	85	1	422	41	16	19	22	1.90
16242639--16242805	87	1.9	88	84	6	223	43	17	17	21	1.88
16242623--16242819	87	2.2	88	81	4	220	42	18	17	20	1.89
16242952--16242995	22	2.0	22	86	0	61	36	15	18	29	1.92
16242884--16243083	110	1.8	109	80	5	242	40	16	19	25	1.91
16242991--16243156	87	1.9	88	83	1	217	42	15	16	25	1.87
16243079--16243609	109	4.8	109	79	2	526	41	16	17	23	1.89
16243079--16243596	219	2.4	218	81	2	565	42	16	17	23	1.88
16243476--16243526	22	2.3	23	89	6	86	39	17	15	27	1.90
16243510--16243878	88	4.2	88	82	4	406	40	15	19	24	1.90
16243510--16243878	175	2.1	178	85	3	498	40	15	19	24	1.90
16243851--16243894	22	2.0	22	90	0	70	31	9	22	36	1.86
16243763--16244090	109	3.0	109	84	0	422	39	16	20	23	1.92
16243995--16244234	87	2.7	87	84	1	302	41	15	20	22	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16244243--16244294	22	2.3	23	80	6	61	42	21	11	25	1.86
16243588--16244559	393	2.5	389	80	3	1016	40	16	19	23	1.91
16244375--16244572	88	2.2	88	81	5	231	40	16	19	23	1.91
16244702--16244846	41	3.5	40	83	5	155	34	15	13	36	1.87
16250938--16251047	17	6.8	16	76	11	91	20	1	30	46	1.61
16250938--16251050	16	7.0	16	79	10	115	21	1	30	46	1.62
16251462--16251506	18	2.5	17	82	10	54	75	2	0	22	0.91
16252568--16252619	8	6.4	8	78	12	52	7	0	7	84	0.77
16254042--16254089	13	3.7	13	83	8	53	66	4	8	20	1.35
16255923--16255981	21	2.7	23	75	17	63	22	0	30	47	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105