genome.fa.s135.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  12  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2253993--2254131	64	2.2	64	84	0	170	23	19	10	46	1.80
2253993--2254392	64	6.2	65	72	8	161	22	20	11	45	1.82
2254421--2254644	64	3.5	64	80	4	245	29	21	8	40	1.83
2254917--2254942	3	8.7	3	100	0	52	0	0	30	69	0.89
2258724--2258765	22	2.0	22	90	4	68	30	14	11	42	1.81
2259136--2259432	151	1.9	150	89	4	436	45	12	8	32	1.72
2264583--2264666	30	2.8	30	88	0	123	42	8	30	17	1.79
2265839--2265876	17	2.2	17	100	0	76	36	5	28	28	1.79
2270519--2270644	61	2.1	61	83	0	153	34	16	8	39	1.80
2270674--2270764	40	2.3	40	84	7	114	59	16	9	14	1.61
2273443--2273490	25	1.9	25	82	0	60	41	2	0	56	1.11
2273712--2273737	7	3.7	7	100	0	52	69	0	0	30	0.89
2273691--2273792	27	3.6	26	80	13	73	62	1	0	34	1.13
2273693--2273806	29	4.0	28	78	11	108	59	1	0	37	1.14
2274217--2274241	6	4.2	6	100	0	50	36	0	0	64	0.94
2277387--2277429	20	2.2	20	100	0	86	46	11	18	23	1.82
2280234--2280291	11	5.5	11	78	17	52	48	0	0	51	1.00
2284379--2284414	15	2.4	15	90	0	54	16	0	5	77	0.94
2284448--2284537	28	3.2	27	81	12	94	27	5	2	64	1.28
2285276--2285313	19	2.0	19	85	10	51	31	0	5	63	1.17
2285370--2285660	58	5.1	57	85	5	347	46	5	9	37	1.62
2285418--2285464	15	3.1	14	80	20	51	40	2	6	51	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2297126--2297161	15	2.4	15	90	0	54	16	0	5	77	0.94
2297193--2297267	27	2.7	27	84	8	98	28	5	1	65	1.22
2298019--2298068	22	2.3	22	82	6	57	32	0	4	64	1.12
2301090--2301135	15	3.1	15	96	0	83	19	21	6	52	1.69
2309419--2309607	44	4.3	44	84	2	245	23	13	16	46	1.83
2309436--2309607	89	2.0	87	89	2	263	22	13	16	47	1.82
2309794--2309836	6	7.0	6	78	5	50	23	0	2	74	0.93
2309822--2309880	22	2.7	22	80	14	68	35	5	1	57	1.31
2309848--2309917	27	2.4	28	80	17	81	31	2	2	62	1.24
2309899--2309931	16	2.1	16	94	0	57	21	0	0	78	0.75
2309871--2309926	18	3.1	18	76	5	58	26	0	1	71	0.96
2310681--2310717	9	4.0	10	86	13	53	29	0	0	70	0.88
2310744--2310773	15	1.9	16	93	6	53	16	0	0	83	0.65
2313600--2316519	971	3.0	972	94	1	5012	33	20	9	37	1.85
2316454--2317732	506	2.5	508	81	3	1472	35	18	10	35	1.85
2317911--2318096	95	2.0	95	90	4	295	51	19	4	24	1.65
2321080--2321173	29	3.2	28	80	7	107	56	1	1	41	1.13
2328745--2328780	14	2.8	13	91	8	56	33	0	5	61	1.19
2329604--2329858	127	2.0	128	92	0	422	29	10	12	47	1.74
2333057--2333119	19	3.8	18	69	30	59	55	7	1	34	1.39
2333056--2333121	30	2.2	31	94	2	116	57	7	1	33	1.36
2333269--2333387	30	3.9	30	87	1	157	52	6	3	37	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2333262--2333374	60	1.9	60	90	0	181	52	5	4	38	1.44
2336096--2336139	23	1.9	23	95	0	79	27	2	20	50	1.60
2336834--2336868	2	17.5	2	100	0	70	51	0	0	48	1.00
2337072--2337103	15	2.1	15	94	0	55	71	0	21	6	1.07
2344169--2344285	5	22.4	5	76	15	78	37	2	4	55	1.33
2344206--2344245	17	2.5	16	88	8	55	37	0	12	50	1.41
2344238--2344284	3	16.0	3	82	12	62	34	2	0	63	1.06
2344238--2344295	30	2.0	30	83	6	75	32	5	0	62	1.18
2344809--2344833	12	2.1	12	100	0	50	28	0	16	56	1.41
2345221--2345284	5	12.4	5	75	18	51	15	6	3	75	1.14
2345221--2345284	26	2.5	26	80	12	78	15	6	3	75	1.14
2346637--2346701	33	2.0	32	87	3	94	21	29	10	38	1.87
2348363--2348395	7	4.7	7	100	0	66	75	0	12	12	1.04
2348360--2348408	21	2.3	21	82	0	62	69	0	12	18	1.19
2350964--2351009	4	11.5	4	82	13	51	26	0	4	69	1.07
2350964--2351009	22	2.1	22	87	0	65	26	0	4	69	1.07
2350964--2351010	18	2.6	18	89	0	67	25	0	6	68	1.13
2353587--2353637	25	2.0	25	100	0	102	15	23	45	15	1.85
2353612--2353821	79	2.6	79	94	0	366	19	25	33	21	1.97
2353716--2353939	118	1.9	118	94	1	396	19	25	33	22	1.97
2353637--2354333	198	3.5	198	96	0	1240	18	24	32	23	1.97
2353834--2354019	80	2.3	79	94	0	318	18	24	33	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2353913--2354137	118	1.9	119	91	0	371	20	24	32	23	1.98
2354032--2354217	80	2.3	79	89	0	282	19	25	32	23	1.98
2354111--2354450	116	2.9	116	91	1	536	19	24	32	23	1.98
2354350--2354500	78	1.9	78	82	7	191	21	25	29	24	1.99
2357423--2357476	15	3.8	13	80	20	56	31	1	0	66	1.02
2357421--2357476	29	2.0	28	86	10	78	32	1	0	66	1.03
2363938--2363981	19	2.3	19	85	14	56	45	0	9	45	1.35
2368455--2368505	20	2.5	20	90	6	77	49	0	0	50	1.00
2368498--2368563	24	2.9	22	80	10	78	57	1	0	40	1.08
2368795--2368833	14	2.9	13	81	7	51	87	0	2	10	0.65
2371687--2371726	11	3.5	11	80	12	53	35	12	0	52	1.39
2373270--2373315	17	2.6	18	82	10	58	76	2	13	8	1.11
2373294--2373349	10	5.4	10	78	21	53	80	0	8	10	0.91
2373296--2373344	26	1.9	26	91	4	82	79	0	10	10	0.93
2373290--2373349	31	1.9	31	93	0	102	80	0	10	10	0.92
2373300--2373350	5	10.0	5	77	12	50	78	0	7	13	0.96
2378604--2379369	387	2.0	387	90	1	1212	31	13	15	38	1.87
2379745--2379785	18	2.4	17	87	4	55	12	0	4	82	0.81
2380017--2380065	16	3.1	16	85	5	64	73	4	0	22	1.00
2380912--2381086	44	4.1	43	87	5	241	44	16	13	25	1.84
2380912--2381086	43	4.1	42	86	4	226	44	16	13	25	1.84
2393090--2393142	28	1.9	27	84	3	70	26	0	5	67	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2393262--2393315	27	2.0	27	100	0	108	44	3	7	44	1.49
2396590--2396629	22	2.0	21	85	14	57	25	0	10	65	1.24
2398631--2398685	14	3.7	14	85	7	56	50	0	0	49	1.00
2398623--2398687	16	4.3	16	77	11	66	52	0	0	47	1.00
2399631--2399992	96	3.8	92	84	7	387	41	11	7	39	1.68
2399631--2399981	187	1.9	190	82	10	450	42	11	7	38	1.68
2400327--2400658	167	2.0	168	90	4	528	35	13	12	37	1.83
2408467--2408527	29	2.1	30	84	9	81	77	0	6	16	0.98
2410844--2410947	39	2.7	39	74	15	99	28	0	7	63	1.22
2410832--2410990	69	2.3	70	75	17	170	26	1	6	65	1.27
2410858--2411000	71	2.0	67	81	15	157	26	1	5	66	1.22
2410967--2411000	17	1.9	18	88	5	52	14	2	2	79	0.97
2411934--2412079	12	12.4	11	65	24	50	19	4	3	72	1.17
2412005--2412076	17	4.2	17	75	5	56	15	8	1	75	1.11
2411993--2412086	27	3.3	27	73	19	75	18	7	1	73	1.12
2412094--2412511	61	7.0	59	91	4	574	46	7	13	33	1.70
2416343--2416417	16	4.8	16	76	17	61	78	0	14	6	0.94
2417660--2418475	41	20.1	41	86	11	1079	23	18	21	36	1.95
2418482--2418516	11	3.3	11	96	4	63	94	5	0	0	0.32
2418483--2418527	19	2.4	19	88	0	63	88	8	0	2	0.58
2418482--2418527	20	2.3	20	88	0	65	89	8	0	2	0.57
2418482--2418516	1	35.0	1	88	0	52	94	5	0	0	0.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2418615--2418653	21	1.9	21	89	5	62	20	30	28	20	1.98
2418759--2418844	35	2.5	36	74	11	72	29	1	5	63	1.24
2418710--2418814	16	6.6	16	69	18	60	27	0	7	64	1.20
2418700--2418863	71	2.3	74	76	16	182	26	1	6	65	1.26
2418702--2418873	83	2.1	76	77	15	177	26	1	6	66	1.23
2418840--2418873	17	1.9	18	88	5	52	14	2	2	79	0.97
2418795--2418918	53	2.3	55	80	8	137	25	4	3	67	1.23
2419330--2419422	31	3.0	31	85	0	123	33	11	18	36	1.87
2419343--2419431	31	2.9	31	84	0	115	32	13	15	38	1.87
2419969--2420040	17	4.2	17	75	5	56	15	8	1	75	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105