genome.fa.s135.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  32  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6324090--6324137	8	6.2	8	88	9	73	50	10	0	39	1.37
6324421--6324541	64	1.9	64	84	0	161	38	14	13	33	1.85
6324781--6325083	64	4.8	63	79	5	272	40	11	14	33	1.81
6324775--6325083	127	2.5	125	78	6	311	42	11	13	33	1.80
6331301--6331351	18	2.8	18	96	0	93	31	9	15	43	1.80
6331375--6331416	14	3.0	14	83	10	50	11	11	2	73	1.18
6331466--6331490	13	1.9	13	100	0	50	80	0	0	20	0.72
6331458--6331505	22	2.2	22	84	0	60	72	2	4	20	1.11
6331466--6331522	14	3.9	14	77	9	53	73	1	5	19	1.11
6331517--6331551	18	1.9	18	88	0	52	65	14	2	17	1.38
6335114--6335175	24	2.6	24	77	7	65	64	11	6	17	1.46
6336431--6336462	3	10.7	3	93	0	55	68	3	0	28	1.04
6337680--6337757	17	4.4	17	73	9	75	19	6	2	71	1.19
6338594--6338619	3	8.7	3	100	0	52	30	0	0	69	0.89
6338707--6339017	62	5.1	60	76	13	258	46	4	10	37	1.60
6338775--6338914	71	2.0	71	85	4	194	47	4	10	37	1.58
6338859--6339019	59	2.8	56	81	5	196	47	4	12	35	1.63
6340091--6340197	54	2.0	55	85	5	146	25	18	8	47	1.76
6342577--6342615	5	8.6	5	78	21	50	84	0	15	0	0.62
6342575--6342616	9	4.8	9	85	5	59	83	0	16	0	0.65
6342575--6342616	17	2.4	17	92	4	66	83	0	16	0	0.65
6342982--6343084	21	5.2	20	71	13	79	77	0	14	6	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6342984--6343084	39	2.6	38	82	16	118	77	0	14	6	1.03
6342973--6343094	47	2.8	45	77	15	130	77	0	14	7	1.03
6342970--6343093	9	13.1	9	76	15	83	76	0	14	8	1.05
6343023--6343101	18	4.2	17	74	15	59	77	0	15	7	0.98
6344385--6344438	25	2.2	25	82	0	72	44	9	7	38	1.65
6344417--6344691	46	6.0	46	83	5	288	37	9	13	40	1.77
6344417--6344691	92	3.0	91	85	6	342	37	9	13	40	1.77
6344550--6344748	25	8.7	24	74	17	140	39	9	16	35	1.80
6344572--6344704	21	6.0	21	76	17	81	38	8	15	37	1.78
6344594--6344746	65	2.2	68	85	6	195	40	7	16	35	1.77
6344809--6345075	114	2.3	114	90	0	417	34	13	16	35	1.87
6345343--6345461	44	2.7	44	82	7	143	24	11	15	47	1.79
6345503--6345532	10	2.9	10	95	5	51	90	3	0	6	0.56
6345502--6345535	16	2.1	16	88	0	50	91	2	0	5	0.51
6345813--6345850	20	2.0	20	90	10	62	15	7	5	71	1.28
6346798--6346931	60	2.3	59	80	3	135	47	5	8	38	1.58
6346913--6347144	57	4.1	56	74	11	188	47	6	9	35	1.63
6346869--6347003	72	1.9	72	85	3	191	47	6	10	35	1.64
6346913--6347100	57	3.3	56	80	7	207	50	5	9	35	1.57
6347336--6347383	20	2.4	20	92	0	78	47	12	4	35	1.60
6352054--6352122	30	2.3	29	85	9	95	49	27	2	20	1.63
6352098--6352136	7	5.4	7	87	6	51	48	30	0	20	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6352098--6352139	22	1.9	22	95	0	75	47	33	0	19	1.49
6352068--6352129	15	4.2	15	74	10	56	50	29	1	19	1.57
6356755--6356970	117	1.9	116	85	2	299	37	14	7	40	1.75
6356757--6356970	58	3.7	57	84	6	252	36	14	7	41	1.74
6357017--6357054	6	6.5	6	87	6	60	81	0	2	15	0.80
6357016--6357054	17	2.3	17	95	0	69	79	0	2	17	0.84
6357299--6357343	21	2.1	22	87	4	65	2	46	0	51	1.13
6357874--6357985	20	5.4	21	76	11	81	62	3	5	28	1.34
6357939--6357996	18	3.0	20	78	19	68	60	3	5	31	1.35
6357959--6358079	26	4.9	26	71	17	89	64	1	3	30	1.19
6357959--6358100	4	35.5	4	69	14	53	64	2	3	28	1.24
6357972--6358082	31	3.5	30	79	10	98	64	1	1	31	1.14
6357979--6358157	37	4.8	37	73	19	99	67	2	1	27	1.14
6357910--6358142	94	2.4	95	80	14	232	64	3	3	29	1.23
6358096--6358158	7	8.9	7	83	11	67	74	1	0	23	0.90
6358093--6358157	12	5.4	11	82	17	76	75	1	0	23	0.89
6358033--6358157	19	6.6	18	73	15	101	69	2	1	26	1.10
6358340--6358552	41	5.0	42	77	12	168	39	19	15	24	1.91
6358394--6358556	41	4.0	40	84	5	177	37	19	17	26	1.93
6358497--6358617	61	2.0	61	93	3	208	43	14	14	28	1.83
6358556--6358662	41	2.6	41	85	2	135	39	19	14	27	1.90
6358456--6358655	102	2.0	102	84	2	267	39	18	16	26	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6359649--6359700	18	2.9	18	75	13	54	5	17	0	76	0.97
6359629--6359709	40	2.1	38	82	13	94	7	18	0	74	1.05
6359636--6359709	38	1.9	38	81	10	89	8	17	0	74	1.05
6367372--6367421	21	2.5	20	75	12	57	20	24	4	52	1.63
6370081--6370359	58	4.8	57	83	9	314	39	14	6	39	1.72
6370377--6370466	17	4.8	17	80	16	99	76	0	6	16	0.99
6370377--6370466	6	14.5	6	77	18	87	76	0	6	16	0.99
6370377--6370466	27	3.1	29	78	15	105	76	0	6	16	0.99
6370377--6370476	23	4.1	23	75	16	85	75	0	7	18	1.03
6370703--6370747	21	2.1	22	91	4	74	0	44	2	53	1.13
6371285--6371397	20	5.4	20	75	8	82	62	3	6	27	1.35
6371336--6371548	33	6.6	31	73	20	122	64	3	3	27	1.27
6371337--6371408	20	3.6	20	77	17	69	62	2	5	29	1.32
6371371--6371503	26	4.9	26	74	17	78	63	3	3	28	1.29
6371350--6371443	14	6.2	14	70	13	62	61	3	5	29	1.33
6371371--6371516	4	36.5	4	67	14	52	64	4	4	27	1.30
6371371--6371540	8	21.5	8	72	19	58	65	3	3	27	1.25
6371386--6371464	29	2.6	28	83	15	88	64	2	2	30	1.20
6371512--6371551	7	5.9	7	94	2	64	75	2	0	22	0.93
6371479--6371552	21	3.5	21	71	17	64	72	4	1	21	1.08
6371487--6371552	14	4.7	14	78	12	55	72	4	1	21	1.10
6371881--6371979	44	2.2	44	83	3	128	32	16	25	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6380005--6380033	2	14.5	2	100	0	58	51	0	0	48	1.00
6382024--6382065	20	2.1	20	100	0	84	28	19	9	42	1.82
6382167--6382209	22	2.0	22	95	0	77	48	16	0	34	1.46
6384011--6384113	3	34.3	3	88	0	152	33	0	33	33	1.58
6386000--6386043	17	2.6	16	89	10	70	22	2	27	47	1.63
6386789--6386845	20	2.8	19	69	10	51	33	7	10	49	1.64
6412369--6412414	21	2.2	21	92	7	76	13	28	4	54	1.57
6413122--6413208	44	2.0	44	83	0	111	58	10	8	22	1.57
6413778--6413825	23	2.2	23	85	7	64	62	10	0	27	1.27
6413801--6413973	58	3.1	54	81	10	204	54	11	2	31	1.49
6413873--6413908	18	2.0	18	88	0	54	47	13	5	33	1.67
6413939--6413984	18	2.3	20	85	10	60	52	10	2	34	1.49
6414972--6415057	41	2.0	43	84	8	115	41	5	0	52	1.25
6415053--6415099	23	1.9	23	83	12	58	53	12	4	29	1.58
6415108--6415150	14	3.0	14	86	6	59	65	2	0	32	1.06
6416173--6416250	6	13.0	6	81	0	66	60	10	1	28	1.37
6419570--6419602	4	8.8	4	87	12	52	0	21	0	78	0.75
6420674--6420769	48	2.0	49	87	2	140	22	8	11	57	1.60
6422779--6422820	3	14.0	3	100	0	84	33	0	0	66	0.92
6423056--6423095	18	2.1	19	90	9	64	62	0	5	32	1.17
6427961--6427999	10	3.9	10	83	12	53	38	7	2	51	1.44
6427962--6428000	20	2.0	20	94	0	69	35	7	2	53	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6427969--6428000	11	3.1	11	82	17	50	34	9	0	56	1.32
6461395--6461461	22	3.1	22	66	18	59	25	7	14	52	1.68
6467350--6467401	2	26.0	2	88	0	77	51	3	0	44	1.19
6468817--6468864	17	3.0	17	73	17	57	52	0	0	47	1.00
6468824--6468877	14	3.9	14	77	0	54	50	0	1	48	1.11
6468816--6468895	31	2.7	30	81	14	78	52	0	1	46	1.08
6468825--6468897	29	2.6	28	82	6	85	52	0	1	46	1.09
6468848--6468894	14	3.3	15	77	16	55	53	0	2	44	1.12
6468857--6468899	21	2.0	21	81	0	50	51	0	2	46	1.13
6469063--6469106	22	2.0	22	86	8	63	47	2	2	47	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105