genome.fa.s135.2.7.7.80.10.50.1000.66.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  66  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11667116--11667173	24	2.4	24	77	8	64	10	10	3	75	1.15
11673697--11673737	12	3.4	12	86	0	64	26	9	19	43	1.82
11676177--11676225	23	2.1	23	92	0	80	28	12	12	46	1.77
11676381--11676443	10	6.3	9	77	18	63	79	0	17	3	0.86
11676373--11676429	20	2.8	20	82	17	73	78	0	19	1	0.83
11676380--11676441	14	4.3	15	75	16	51	77	0	19	3	0.90
11676395--11676444	24	2.1	24	85	10	68	80	0	18	2	0.82
11676592--11676833	44	5.5	43	82	3	207	40	13	14	30	1.85
11676638--11676867	44	5.3	44	85	1	259	41	14	13	30	1.84
11676592--11676867	132	2.1	132	83	6	337	41	13	13	31	1.84
11676838--11677101	47	5.6	47	87	2	357	42	19	10	28	1.84
11676835--11677101	95	2.8	95	87	1	383	41	19	10	28	1.84
11676848--11677104	142	1.8	137	90	1	370	41	20	10	28	1.84
11688041--11688082	21	2.0	21	100	0	84	52	4	23	19	1.65
11688047--11688092	21	2.2	21	88	0	65	58	6	17	17	1.59
11688115--11688165	19	2.6	19	82	14	59	5	5	11	76	1.14
11691513--11691564	21	2.2	24	83	12	65	48	13	7	30	1.71
11700853--11700887	17	2.1	16	89	5	52	22	2	11	62	1.41
11706888--11706934	24	1.9	24	83	12	60	59	2	0	38	1.09
11707810--11707834	7	3.6	7	100	0	50	84	0	0	16	0.63
11707799--11707868	34	2.1	32	84	10	88	65	5	1	27	1.23
11724718--11724782	26	2.5	26	80	14	71	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11726037--11726087	17	2.9	18	80	8	70	1	23	0	74	0.92
11727812--11728281	59	7.8	58	81	8	473	33	9	6	51	1.60
11727812--11728279	177	2.6	176	84	8	561	33	9	6	51	1.60
11728346--11728379	3	10.7	3	87	12	50	67	0	2	29	1.05
11728346--11728391	9	4.5	10	84	15	51	67	0	4	28	1.10
11728345--11728391	12	3.7	13	78	21	55	68	0	4	27	1.08
11729462--11729757	84	3.5	82	79	6	288	48	12	16	22	1.78
11729369--11729786	170	2.5	165	78	6	396	46	12	16	23	1.82
11729547--11729784	85	2.8	84	80	6	250	48	10	16	23	1.78
11729718--11729852	70	1.9	70	84	3	182	46	13	17	22	1.83
11741701--11742203	58	8.7	57	78	10	400	34	10	7	47	1.65
11742297--11742330	11	3.0	11	91	4	50	67	0	5	26	1.13
11744386--11744452	34	2.0	34	90	0	107	46	8	10	34	1.70
11744392--11744478	34	2.5	34	83	1	102	49	9	12	28	1.71
11744501--11744590	34	2.6	34	72	10	85	36	13	10	40	1.78
11750470--11750542	37	2.0	37	88	0	110	35	9	4	50	1.54
11758935--11759323	146	2.7	145	80	4	405	41	13	13	31	1.83
11759886--11759917	15	2.0	17	88	11	50	3	15	0	81	0.82
11759970--11760610	108	5.9	108	78	2	441	46	15	18	19	1.84
11759979--11760676	36	19.4	36	72	3	328	46	15	19	19	1.84
11771749--11771783	16	2.2	16	89	0	52	60	14	0	25	1.35
11771793--11771907	37	3.1	37	85	0	149	47	13	4	34	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11775528--11775897	144	2.6	145	79	8	351	40	11	12	34	1.80
11778011--11778044	17	2.0	17	94	0	59	23	8	23	44	1.81
11782919--11782958	20	2.0	20	95	0	71	17	5	2	75	1.10
11786621--11786661	14	3.0	13	82	10	55	85	9	2	2	0.78
11786606--11786661	21	2.7	21	80	5	60	80	16	1	1	0.88
11789763--11789796	15	2.3	15	89	0	50	73	0	23	2	0.97
11790486--11790555	10	6.8	10	79	10	70	72	0	17	10	1.10
11790469--11790558	32	2.8	33	79	5	94	74	0	17	7	1.05
11791044--11791098	21	2.6	21	77	13	58	76	0	16	7	1.00
11792960--11793047	35	2.5	35	81	1	104	31	14	13	39	1.85
11792981--11793108	35	3.7	34	77	7	125	28	17	14	39	1.89
11793334--11793411	34	2.3	34	82	2	95	24	8	16	50	1.74
11793777--11794092	32	9.9	34	69	14	129	23	15	19	42	1.89
11793807--11794094	34	9.0	34	67	13	110	23	14	19	42	1.89
11793777--11794092	66	4.9	66	76	12	214	23	15	19	42	1.89
11793763--11794108	189	1.8	189	84	2	480	23	15	19	41	1.89
11793963--11794064	32	3.1	32	83	5	141	25	13	18	42	1.87
11794608--11794637	9	3.2	9	95	4	51	30	13	20	36	1.90
11797222--11797263	20	2.0	21	90	4	68	42	30	2	23	1.67
11797278--11797322	19	2.4	19	85	3	56	42	37	0	20	1.52
11799570--11799599	11	2.8	11	95	5	53	10	26	10	53	1.66
11804995--11805469	49	9.8	47	75	10	343	28	12	13	45	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11804993--11805465	99	4.9	97	77	6	422	28	12	13	45	1.79
11804995--11805544	146	3.8	143	74	11	445	29	12	12	44	1.80
11807938--11808272	7	51.0	7	64	17	51	46	32	0	20	1.56
11808033--11808186	12	12.0	12	69	17	71	46	31	0	22	1.52
11808123--11808246	19	6.6	19	68	14	69	45	34	0	18	1.55
11808093--11808185	38	2.4	38	83	5	116	46	32	0	21	1.52
11808693--11808741	24	2.0	25	92	4	82	51	4	8	36	1.51
11816867--11817006	60	2.3	61	91	2	230	30	9	12	47	1.73
11817479--11817629	76	2.0	77	84	1	196	34	12	15	37	1.86
11820259--11820288	15	2.0	15	93	0	51	40	23	6	30	1.80
11822981--11823095	57	2.0	57	98	0	221	33	4	22	39	1.74
11823496--11823658	84	1.9	84	97	0	308	34	17	13	33	1.89
11831571--11831615	2	23.0	2	90	4	74	51	2	0	46	1.13
11834803--11834848	3	15.3	3	100	0	92	67	0	0	32	0.91
11835503--11835551	26	1.9	26	83	4	64	57	2	0	40	1.10
11843672--11843726	26	2.2	26	86	3	76	5	1	16	76	1.06
11843670--11843718	18	2.6	19	84	9	57	6	2	14	77	1.05
11843703--11843736	15	2.2	16	89	5	52	5	5	8	79	1.05
11844228--11844340	22	5.0	22	72	9	77	24	16	25	32	1.96
11844296--11844340	23	2.0	23	90	0	72	28	20	20	31	1.97
11844298--11844347	23	2.2	23	85	0	64	32	20	16	32	1.94
11844556--11844622	8	7.9	8	79	12	62	5	10	1	82	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11844575--11844629	14	4.0	14	79	9	60	7	9	0	83	0.81
11844556--11844622	17	3.9	16	80	9	62	5	10	1	82	0.91
11844573--11844628	17	3.2	18	78	14	64	7	7	0	85	0.73
11844582--11844638	25	2.1	27	81	9	64	12	8	1	77	1.07
11844581--11844632	25	2.0	27	85	7	72	13	7	0	78	0.94
11844768--11844820	13	4.0	13	83	14	56	1	22	0	75	0.90
11844782--11844815	17	2.0	17	88	0	50	0	23	0	76	0.79
11856161--11856193	15	2.3	15	94	5	59	15	0	0	84	0.61
11856153--11856192	21	2.0	21	95	5	73	15	0	0	85	0.61
11856177--11856244	35	2.0	34	88	2	100	35	7	1	55	1.37
11859344--11859374	16	1.9	16	100	0	62	45	25	3	25	1.69
11863045--11863125	27	3.0	27	78	5	101	39	18	6	35	1.76
11865864--11865959	30	3.2	30	63	21	74	23	16	12	46	1.81
11865863--11865987	60	2.1	60	92	1	216	24	15	14	46	1.82
11866907--11866988	34	2.4	34	79	4	94	28	12	20	39	1.89
11868235--11868286	12	4.3	12	85	0	68	21	3	30	44	1.70
11871474--11871542	34	2.0	34	83	8	86	34	20	11	33	1.89
11873296--11873342	22	2.1	22	88	0	67	38	14	8	38	1.77
11873936--11873991	22	2.5	22	82	0	76	57	8	12	21	1.62
11873828--11873989	81	2.0	81	82	2	200	46	8	14	30	1.73
11874666--11874716	26	2.0	26	84	7	68	35	0	1	62	1.06
11876753--11876842	44	2.0	44	97	0	171	37	8	12	41	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11887622--11887673	21	2.5	21	84	9	70	26	23	25	25	2.00
11889693--11889751	21	2.7	21	81	7	64	76	0	20	3	0.93
11890582--11890623	3	14.0	3	100	0	84	66	0	0	33	0.92
11897363--11897415	13	4.2	13	76	7	56	47	0	0	52	1.00
11898758--11898805	17	2.5	20	74	19	57	31	0	2	66	1.03
11901769--11901793	10	2.5	10	100	0	50	64	0	0	36	0.94
11905702--11906022	74	4.4	72	80	8	303	49	3	6	40	1.44
11906254--11906312	28	2.1	28	84	6	75	42	13	3	40	1.61
11906872--11906962	35	2.7	34	80	6	96	40	0	3	56	1.16
11906899--11906966	19	3.8	18	74	20	61	44	0	4	51	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105