genome.fa.s135.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167960.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_22, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19587844

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   

This is table  61  of  105  ( 12570 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11116859--11116982	14	8.7	14	66	21	62	75	4	3	16	1.10
11116853--11116983	9	13.1	9	68	20	66	75	5	3	16	1.11
11117057--11117098	21	1.9	23	85	9	61	71	4	7	16	1.26
11117308--11117357	19	2.7	18	78	9	55	80	4	4	12	1.00
11118637--11119293	361	1.8	363	79	7	773	42	9	9	38	1.70
11118610--11122143	181	19.7	176	72	12	1653	40	8	10	40	1.70
11120823--11120865	23	2.0	21	82	13	52	53	4	11	30	1.57
11122123--11127649	180	30.9	172	71	13	2167	39	8	10	41	1.69
11122123--11130133	534	15.0	532	74	10	4347	39	8	10	41	1.69
11123344--11123376	16	2.0	17	88	5	50	45	3	9	42	1.51
11122131--11126901	180	26.7	180	74	9	2380	39	8	10	41	1.69
11122132--11129804	720	10.8	703	73	10	3312	39	8	10	41	1.69
11122129--11127649	896	6.2	887	74	9	3271	39	8	10	41	1.69
11125627--11125664	20	1.9	20	84	10	51	44	5	10	39	1.61
11122162--11127649	357	15.4	360	73	10	2647	39	8	10	41	1.69
11122182--11126777	176	25.7	175	72	10	996	40	8	10	41	1.69
11126809--11127124	169	1.9	167	80	5	377	38	7	10	42	1.68
11124307--11127222	536	5.4	534	72	11	1280	39	8	10	41	1.69
11126970--11127649	181	3.8	181	74	7	461	38	8	10	43	1.69
11127635--11129788	181	12.0	181	77	6	1605	40	8	9	41	1.68
11130000--11130257	130	2.0	130	84	4	342	42	8	10	38	1.69
11130944--11131610	361	1.8	362	80	3	788	38	8	9	43	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11130130--11131787	181	9.2	180	72	8	974	38	8	9	43	1.67
11131671--11131703	18	1.9	17	88	11	50	48	0	9	42	1.35
11132491--11132564	8	9.1	8	71	14	53	20	2	1	75	1.00
11132462--11132595	17	7.9	17	70	15	91	22	4	1	71	1.12
11132462--11132536	30	2.3	32	82	11	91	22	2	1	73	1.04
11132464--11132629	24	6.7	24	70	20	92	22	4	1	70	1.16
11132521--11132621	17	6.1	17	67	23	54	23	5	1	68	1.22
11132462--11132592	30	4.4	29	72	18	83	22	4	1	70	1.13
11132794--11132843	12	4.2	12	77	10	57	14	2	6	78	1.03
11142410--11142478	18	3.7	18	69	14	50	46	1	4	47	1.31
11142568--11142616	24	2.0	24	85	14	66	51	0	0	48	1.00
11142568--11142631	24	2.6	24	78	11	60	54	0	0	45	0.99
11142758--11142807	10	4.9	10	80	9	57	42	2	0	56	1.11
11142811--11144557	182	9.6	181	74	9	1270	40	7	8	43	1.65
11142811--11143485	362	1.9	364	80	6	807	39	6	9	44	1.63
11142811--11143605	362	2.2	363	78	8	797	39	6	9	44	1.63
11144004--11144057	18	3.1	18	73	13	58	46	7	9	37	1.64
11143632--11144562	181	5.2	179	75	9	743	41	8	8	41	1.65
11144326--11144360	17	1.9	19	88	11	56	51	5	0	42	1.25
11142823--11144498	912	1.8	909	78	8	1896	40	7	8	43	1.64
11144783--11146781	179	11.2	179	75	8	1394	40	7	9	42	1.66
11145819--11145857	20	2.0	20	90	10	62	48	0	5	46	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11146793--11146839	18	2.7	18	80	12	62	40	10	4	44	1.59
11146947--11147274	179	1.8	179	84	2	453	37	11	7	43	1.70
11147341--11147373	18	1.9	17	88	11	50	42	6	3	48	1.43
11147641--11147701	23	2.7	22	73	19	54	52	0	3	44	1.17
11147974--11148040	20	3.2	20	79	10	64	49	1	1	47	1.19
11148190--11148224	10	3.5	10	96	0	61	48	0	0	51	1.00
11148338--11148379	22	2.0	20	82	17	50	54	2	2	40	1.26
11148957--11148995	19	2.1	19	85	9	53	46	2	2	48	1.29
11149257--11151522	180	12.7	180	77	6	1874	40	8	10	41	1.69
11149259--11152941	713	5.2	708	76	8	2917	39	8	10	42	1.69
11151528--11152941	180	7.9	180	77	5	1187	38	7	10	43	1.69
11151557--11152684	537	2.1	535	80	7	1225	39	8	10	42	1.70
11153056--11153089	16	2.1	16	94	0	59	52	0	0	47	1.00
11153231--11153322	44	2.0	44	84	14	116	41	2	3	53	1.29
11153443--11153582	35	4.0	34	72	18	110	49	2	1	47	1.22
11153513--11153567	9	6.1	9	79	8	58	47	1	0	50	1.11
11153699--11153804	55	1.9	55	83	12	137	50	0	0	48	1.13
11153686--11153822	62	2.1	68	80	15	157	50	2	0	45	1.21
11154201--11154230	14	2.1	15	93	6	53	40	0	0	60	0.97
11154452--11154501	24	2.0	25	84	3	66	50	2	0	48	1.12
11154677--11154731	26	2.2	24	81	15	58	49	3	1	45	1.30
11154687--11154748	26	2.3	27	84	15	76	48	1	0	50	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11155344--11155399	18	3.1	18	80	19	64	46	0	1	51	1.11
11156407--11156446	13	2.9	14	81	11	55	45	0	0	55	0.99
11157007--11157128	26	5.1	24	69	24	71	53	0	0	46	1.00
11157071--11157122	15	3.5	15	76	2	52	53	0	0	46	1.00
11157083--11157134	20	2.6	20	81	0	59	51	1	0	46	1.12
11157915--11157993	16	4.7	16	72	14	52	51	1	0	46	1.08
11157950--11158008	11	5.6	11	78	11	70	50	0	0	49	1.00
11158022--11158102	28	2.5	31	77	21	80	53	2	1	43	1.22
11158237--11158299	30	2.1	30	82	5	74	46	3	0	50	1.17
11158257--11158309	21	2.5	21	77	17	56	43	0	0	56	0.99
11158391--11158436	15	3.1	15	82	11	51	50	2	0	47	1.13
11158617--11158699	17	4.6	18	71	18	64	48	1	1	49	1.16
11158775--11158854	11	7.1	11	72	19	67	42	1	1	55	1.16
11158947--11158999	17	2.9	17	75	10	52	47	5	0	47	1.26
11159094--11159162	21	3.3	21	74	22	65	49	0	1	49	1.09
11159084--11159147	19	3.6	18	74	17	62	50	0	1	48	1.10
11159486--11159533	25	1.9	25	86	0	69	47	2	0	50	1.12
11159947--11159995	13	3.2	15	80	19	57	48	0	0	51	1.00
11159936--11160022	32	2.7	32	81	13	106	48	1	0	50	1.08
11160217--11160261	21	2.1	21	88	8	65	48	6	0	44	1.29
11160807--11160896	25	3.8	23	75	17	62	52	3	2	42	1.30
11161337--11161385	14	3.3	14	76	15	53	46	0	2	51	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11161615--11161649	17	2.1	16	89	5	52	51	2	0	45	1.16
11162504--11162586	23	3.5	23	79	12	80	49	2	1	46	1.22
11162572--11162618	16	2.9	16	84	6	60	48	6	0	44	1.28
11162691--11162744	22	2.4	23	85	11	69	53	5	0	40	1.24
11163161--11163192	16	2.0	16	93	0	55	46	0	0	53	1.00
11163159--11163201	15	2.9	15	83	10	61	51	0	0	48	1.00
11163352--11163386	16	2.3	15	90	5	52	37	5	2	54	1.39
11163361--11163423	27	2.3	27	83	5	74	44	3	3	49	1.34
11163467--11163533	23	3.1	22	82	14	70	47	1	0	50	1.10
11163738--11163803	19	3.7	18	78	15	57	45	0	1	53	1.09
11163753--11163806	18	3.1	16	80	20	56	48	0	0	51	1.00
11163989--11165986	181	11.2	179	78	7	1532	40	8	9	41	1.69
11163988--11166001	360	5.6	358	76	9	1338	40	8	9	41	1.69
11164222--11166001	539	3.3	534	77	9	1314	40	8	9	41	1.68
11166132--11166187	27	2.1	27	83	12	71	37	0	5	57	1.22
11166732--11167449	181	4.0	181	74	6	604	38	8	10	42	1.70
11166833--11167164	170	2.0	170	81	3	400	35	7	9	47	1.64
11167917--11167948	14	2.1	16	88	11	50	53	0	3	43	1.16
11168122--11168156	17	2.1	17	89	5	54	51	2	0	45	1.16
11169757--11169832	35	2.2	33	75	22	77	46	1	2	50	1.24
11169837--11169880	11	3.9	11	84	3	52	54	0	0	45	0.99
11170300--11170329	7	4.3	7	100	0	60	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11170341--11170381	21	2.0	21	85	9	57	58	0	0	41	0.98
11170811--11170963	36	4.4	35	79	6	123	20	19	7	51	1.71
11170827--11170961	71	1.9	71	85	8	186	22	18	8	51	1.72
11170952--11175316	35	124.7	35	74	7	2127	19	15	12	52	1.73
11172853--11172943	19	5.1	18	66	18	57	23	18	9	48	1.78
11173624--11174131	142	3.6	141	77	9	391	18	14	14	52	1.75
11173471--11174028	177	3.2	172	80	9	522	18	14	13	52	1.74
11173824--11174176	102	3.4	101	80	4	303	16	15	14	52	1.74
11175052--11175388	139	2.4	141	78	6	337	20	13	13	53	1.73
11175326--11175410	35	2.4	34	80	3	89	22	17	5	54	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105