genome.fa.s57.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019167882.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_15, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22478863

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   

This is table  10  of  106  ( 12717 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1593088--1593210	35	3.5	35	65	2	93	47	32	3	17	1.63
1593063--1593210	71	2.1	71	91	2	235	48	30	3	17	1.63
1593156--1593229	28	2.6	28	74	21	73	48	33	2	14	1.58
1593083--1593222	71	2.0	71	94	0	244	49	30	3	16	1.63
1597692--1598585	306	2.9	300	83	4	1087	34	12	15	38	1.85
1603772--1603818	15	3.0	16	81	6	60	23	19	8	48	1.75
1611140--1611172	3	11.3	3	93	6	59	33	0	0	66	0.92
1621845--1621879	16	2.2	16	89	0	52	22	20	17	40	1.92
1622146--1622237	41	2.3	42	81	5	109	26	14	19	40	1.89
1622170--1622333	42	3.9	40	74	13	125	26	12	19	42	1.86
1622212--1622444	42	5.4	42	77	11	177	24	12	19	44	1.84
1622293--1622447	45	3.5	45	81	3	174	21	13	20	43	1.86
1622470--1622510	11	3.9	10	90	3	55	85	12	2	0	0.70
1622462--1622509	5	10.0	5	77	22	50	83	14	2	0	0.74
1622687--1622762	3	24.7	3	82	12	68	31	0	0	68	0.90
1622681--1622770	24	3.5	24	76	14	81	30	0	0	70	0.88
1622714--1622745	10	3.4	10	91	8	50	34	0	0	65	0.93
1622672--1622763	12	7.3	13	70	27	58	31	0	0	68	0.90
1622693--1622770	18	4.2	18	71	12	68	29	0	0	70	0.87
1622677--1622777	25	3.7	27	75	11	98	28	0	0	71	0.86
1623690--1624102	59	6.8	59	70	16	238	50	6	9	33	1.62
1623758--1623868	57	2.0	56	85	5	152	45	9	10	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1623752--1624005	131	1.9	131	80	4	289	50	6	9	33	1.60
1623889--1624102	62	3.6	56	79	12	234	50	6	9	34	1.61
1623865--1624102	57	4.0	59	80	8	250	51	6	9	32	1.59
1624166--1624203	5	7.6	5	91	8	60	15	0	0	84	0.63
1630895--1630939	23	1.9	25	82	13	60	62	0	4	33	1.15
1630384--1630985	240	2.6	233	87	4	854	44	4	9	41	1.58
1631043--1631110	23	3.2	21	79	12	68	42	1	2	52	1.25
1631050--1631129	23	3.6	23	72	19	62	47	0	2	50	1.14
1632514--1632579	34	1.9	34	93	6	116	42	21	13	22	1.88
1633029--1633080	15	3.4	14	80	19	59	50	1	0	48	1.12
1633035--1633094	20	2.9	21	71	26	56	50	1	0	48	1.11
1633083--1633133	24	2.1	25	88	3	77	70	0	1	27	0.98
1633684--1633722	21	2.0	21	85	10	55	56	2	15	25	1.52
1634968--1635062	44	2.2	45	84	5	131	51	6	3	38	1.43
1639501--1639540	12	3.2	13	86	6	57	20	0	0	80	0.72
1639543--1639589	22	2.2	22	85	11	62	42	6	0	51	1.27
1639850--1639900	21	2.4	21	90	0	75	43	0	1	54	1.11
1639862--1639912	21	2.4	21	93	3	84	39	0	1	58	1.09
1640287--1640340	28	1.9	28	85	7	74	42	0	0	57	0.98
1642209--1642243	9	3.9	9	84	0	52	11	0	20	68	1.20
1643118--1643163	20	2.4	18	86	10	65	23	0	2	73	0.94
1643424--1643462	12	3.2	12	81	0	51	76	0	2	20	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1643412--1643462	24	2.1	24	88	3	75	76	0	1	21	0.88
1643443--1643473	9	3.3	9	91	8	53	74	0	0	25	0.82
1643445--1643483	10	3.9	10	90	6	53	71	0	5	23	1.05
1643412--1643469	22	2.5	22	86	8	71	74	0	1	24	0.92
1648005--1648040	19	1.9	19	88	5	56	44	16	8	30	1.77
1648442--1648491	13	3.8	13	75	17	50	68	4	4	24	1.24
1648425--1648557	9	14.7	9	66	18	55	70	2	4	22	1.16
1648468--1648517	24	2.0	26	85	11	70	66	0	4	30	1.10
1648476--1648559	24	3.3	24	78	15	80	72	1	2	23	1.03
1648529--1648559	6	5.2	6	100	0	62	83	0	0	16	0.64
1648777--1649023	41	6.0	41	83	5	284	38	21	16	24	1.92
1648867--1649081	82	2.6	82	81	2	238	41	20	14	23	1.89
1649409--1649490	43	1.9	42	90	7	130	35	15	12	36	1.85
1650900--1650949	24	2.1	24	88	7	75	12	26	0	62	1.30
1657501--1657552	25	2.1	25	85	7	70	44	9	3	42	1.55
1658499--1658554	23	2.4	24	77	13	64	64	1	3	30	1.21
1660084--1660130	20	2.4	19	86	6	67	23	0	2	74	0.93
1660391--1660429	12	3.2	12	81	0	51	76	0	2	20	0.90
1660379--1660429	24	2.1	24	88	3	75	76	0	1	21	0.88
1660410--1660440	9	3.3	9	91	8	53	74	0	0	25	0.82
1660412--1660450	10	3.9	10	90	6	53	71	0	5	23	1.05
1660379--1660436	22	2.5	22	86	8	71	74	0	1	24	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1660385--1660454	31	2.2	31	82	10	79	74	0	4	21	0.99
1665577--1665641	26	2.6	24	80	7	58	38	10	6	44	1.64
1665668--1665711	17	2.6	17	85	0	52	9	2	9	79	1.02
1666308--1666343	19	1.9	19	88	5	56	44	16	8	30	1.77
1666738--1666869	6	18.9	7	69	18	55	70	2	3	23	1.15
1666787--1666846	30	1.9	33	86	10	90	66	1	3	28	1.17
1666837--1666871	16	2.1	17	94	5	63	85	0	0	14	0.59
1667088--1667340	41	6.2	41	79	5	208	39	22	14	24	1.91
1667113--1667340	121	1.9	124	81	7	277	41	21	13	24	1.88
1667639--1667720	43	1.9	42	90	7	130	35	15	12	36	1.85
1669102--1669158	28	2.1	28	87	9	82	3	19	0	77	0.92
1669141--1669188	23	2.1	23	88	7	71	12	27	0	60	1.32
1676672--1676715	17	2.6	16	82	13	52	70	0	9	20	1.14
1676645--1676762	38	2.9	42	74	13	113	69	0	7	22	1.13
1676697--1676767	24	3.0	24	76	15	67	69	0	5	25	1.10
1676656--1676800	78	1.9	77	82	8	186	67	1	6	24	1.22
1681538--1681942	145	2.8	145	79	6	433	34	14	10	40	1.79
1682447--1682529	24	3.3	24	75	17	78	61	4	22	10	1.48
1682429--1682549	51	2.3	53	84	5	149	55	7	26	10	1.60
1682447--1682549	53	2.0	51	86	7	145	59	6	23	10	1.55
1695342--1695379	3	12.7	3	100	0	76	34	0	0	65	0.93
1696034--1696121	44	2.0	44	86	4	124	19	7	13	59	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1696859--1696895	14	2.7	14	91	4	58	40	5	2	51	1.39
1697791--1697823	15	2.1	16	88	5	50	72	0	24	3	0.98
1698913--1698962	21	2.4	21	79	0	55	10	6	8	76	1.17
1699142--1699332	38	5.1	34	73	16	112	29	5	10	53	1.59
1699151--1699308	18	8.4	18	72	19	112	31	5	11	51	1.61
1699140--1699246	34	2.9	37	80	10	139	28	5	12	54	1.60
1699181--1699314	56	2.3	59	83	10	161	31	5	10	52	1.60
1699142--1699308	38	4.5	36	78	10	158	29	5	11	52	1.61
1699297--1699402	25	4.5	24	71	16	69	22	5	17	53	1.65
1701346--1701397	16	3.3	15	81	5	59	80	0	17	1	0.80
1701345--1701396	26	2.0	26	85	7	70	78	0	19	1	0.84
1701362--1701402	19	2.2	19	86	8	57	78	0	17	4	0.93
1701346--1701392	15	3.2	14	80	14	51	80	0	17	2	0.80
1701348--1701403	26	2.2	24	78	12	60	78	0	17	3	0.89
1702392--1702435	14	3.3	13	84	6	54	25	4	15	54	1.60
1715002--1715075	37	2.0	37	100	0	148	32	13	10	43	1.79
1719866--1720026	25	6.3	27	70	19	107	28	4	11	55	1.56
1719866--1720184	49	6.8	47	71	17	152	27	5	11	55	1.56
1719987--1720180	65	2.9	67	78	13	197	26	4	12	55	1.57
1720038--1720133	20	4.6	20	73	16	86	26	6	13	54	1.63
1720114--1720196	13	6.6	13	72	15	59	28	4	10	55	1.55
1720049--1720199	44	3.2	44	79	10	142	27	5	11	56	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1720111--1720216	24	4.3	26	78	7	98	26	3	11	58	1.49
1720792--1720933	44	3.2	45	80	14	143	19	9	11	59	1.59
1723594--1723720	18	6.4	18	68	23	62	31	7	13	48	1.69
1723596--1723641	23	2.0	23	100	0	92	34	4	13	47	1.62
1723780--1723909	65	2.0	66	89	1	199	26	6	16	50	1.68
1725161--1725408	136	1.8	134	81	6	304	27	11	11	50	1.73
1731384--1731424	21	2.0	21	85	9	57	2	14	2	80	0.92
1733395--1733423	15	1.9	15	100	0	58	68	0	10	20	1.18
1734591--1734639	19	2.6	19	93	0	80	32	2	30	34	1.69
1734631--1734672	7	6.3	7	83	10	61	11	2	45	40	1.54

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106